FFCP PHASE1:Hg19::chr3:11103949..11103954,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-25bp_to_BC041425_5end | |association_with_transcript=-25bp_to_BC041425_5end | ||
|cluster_id=chr3:11103949..11103954,+ | |||
|coexpression_cluster_id=C2711 | |coexpression_cluster_id=C2711 | ||
|description=CAGE_peak_1_at_BC041425_5end | |description=CAGE_peak_1_at_BC041425_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002150!1.36e-18!3;CL:0000861!1.36e-18!3;CL:0002379!1.33e-07!1;CL:0002127!1.42e-07!1;CL:0000914!1.42e-07!1;CL:0000911!1.42e-07!1;CL:0000814!1.42e-07!1;CL:0002042!1.42e-07!1;CL:0002039!1.42e-07!1;CL:0002040!1.42e-07!1;CL:0002041!1.42e-07!1;CL:0000313!1.51e-07!1 | |ontology_enrichment_celltype=CL:0002150!1.36e-18!3;CL:0000861!1.36e-18!3;CL:0002379!1.33e-07!1;CL:0002127!1.42e-07!1;CL:0000914!1.42e-07!1;CL:0000911!1.42e-07!1;CL:0000814!1.42e-07!1;CL:0002042!1.42e-07!1;CL:0002039!1.42e-07!1;CL:0002040!1.42e-07!1;CL:0002041!1.42e-07!1;CL:0000313!1.51e-07!1 | ||
|ontology_enrichment_celltype_v019=CL:0000322;1.03e-17;3!CL:0002202;8.61e-07;9!CL:0002632;8.61e-07;9 | |ontology_enrichment_celltype_v019=CL:0000322;1.03e-17;3!CL:0002202;8.61e-07;9!CL:0002632;8.61e-07;9 | ||
|ontology_enrichment_celltype_v019_2=CL:0000322,1.12e-17,3;CL:0002202,8.85e-07,9;CL:0002632,8.85e-07,9 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:162!6.46e-08!235;DOID:6193!7.03e-08!1;DOID:14566!1.16e-07!239;DOID:3620!1.33e-07!1;DOID:3565!1.33e-07!1;DOID:2152!1.51e-07!1;DOID:0060085!1.72e-07!1;DOID:3165!1.72e-07!1;DOID:0060121!1.72e-07!1;DOID:2438!1.72e-07!1;DOID:4418!1.72e-07!1;DOID:0050686!7.42e-07!137 | |ontology_enrichment_disease=DOID:162!6.46e-08!235;DOID:6193!7.03e-08!1;DOID:14566!1.16e-07!239;DOID:3620!1.33e-07!1;DOID:3565!1.33e-07!1;DOID:2152!1.51e-07!1;DOID:0060085!1.72e-07!1;DOID:3165!1.72e-07!1;DOID:0060121!1.72e-07!1;DOID:2438!1.72e-07!1;DOID:4418!1.72e-07!1;DOID:0050686!7.42e-07!137 | ||
|ontology_enrichment_disease_v019=DOID:6193;1.88e-50;1!DOID:3350;4.90e-26;2!DOID:3910;8.10e-26;2!DOID:3908;3.42e-11;5!DOID:1325;2.26e-08;7!DOID:3904;2.26e-08;7!DOID:3905;8.61e-07;9 | |ontology_enrichment_disease_v019=DOID:6193;1.88e-50;1!DOID:3350;4.90e-26;2!DOID:3910;8.10e-26;2!DOID:3908;3.42e-11;5!DOID:1325;2.26e-08;7!DOID:3904;2.26e-08;7!DOID:3905;8.61e-07;9 | ||
|ontology_enrichment_disease_v019_2=DOID:6193,2.42e-50,1;DOID:3350,5.56e-26,2;DOID:3910,9.18e-26,2;DOID:3908,3.60e-11,5;DOID:1325,2.35e-08,7;DOID:3904,2.35e-08,7;DOID:3905,8.85e-07,9 | |||
|ontology_enrichment_uberon=UBERON:0004911!1.51e-07!1;UBERON:0004913!3.01e-07!1;UBERON:0003703!3.01e-07!1;UBERON:0001174!3.01e-07!1;UBERON:0004914!3.01e-07!1;UBERON:0002038!3.40e-07!1;UBERON:0009661!3.40e-07!1;UBERON:0007190!4.90e-07!1;UBERON:0002394!9.50e-07!4;UBERON:0003928!9.50e-07!4 | |ontology_enrichment_uberon=UBERON:0004911!1.51e-07!1;UBERON:0004913!3.01e-07!1;UBERON:0003703!3.01e-07!1;UBERON:0001174!3.01e-07!1;UBERON:0004914!3.01e-07!1;UBERON:0002038!3.40e-07!1;UBERON:0009661!3.40e-07!1;UBERON:0007190!4.90e-07!1;UBERON:0002394!9.50e-07!4;UBERON:0003928!9.50e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0004903;8.10e-26;2!UBERON:0002173;8.10e-26;2!UBERON:0002186;8.10e-26;2!UBERON:0004821;1.03e-17;3!UBERON:0007499;1.03e-17;3!UBERON:0003215;1.03e-17;3!UBERON:0010368;1.03e-17;3!UBERON:0009911;1.03e-17;3!UBERON:0002299;1.03e-17;3!UBERON:0006524;1.03e-17;3!UBERON:0008874;1.03e-17;3!UBERON:0002169;1.03e-17;3!UBERON:0004894;1.03e-17;3!UBERON:0009856;1.21e-13;4!UBERON:0000473;1.75e-07;8 | |ontology_enrichment_uberon_v019=UBERON:0004903;8.10e-26;2!UBERON:0002173;8.10e-26;2!UBERON:0002186;8.10e-26;2!UBERON:0004821;1.03e-17;3!UBERON:0007499;1.03e-17;3!UBERON:0003215;1.03e-17;3!UBERON:0010368;1.03e-17;3!UBERON:0009911;1.03e-17;3!UBERON:0002299;1.03e-17;3!UBERON:0006524;1.03e-17;3!UBERON:0008874;1.03e-17;3!UBERON:0002169;1.03e-17;3!UBERON:0004894;1.03e-17;3!UBERON:0009856;1.21e-13;4!UBERON:0000473;1.75e-07;8 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,9.18e-26,2;UBERON:0002173,9.18e-26,2;UBERON:0002186,9.18e-26,2;UBERON:0004821,1.12e-17,3;UBERON:0003215,1.12e-17,3;UBERON:0010368,1.12e-17,3;UBERON:0009911,1.12e-17,3;UBERON:0002299,1.12e-17,3;UBERON:0006524,1.12e-17,3;UBERON:0008874,1.12e-17,3;UBERON:0002169,1.12e-17,3;UBERON:0004894,1.12e-17,3;UBERON:0000473,1.69e-07,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224170287987055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1605880751037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,1.27126825146383,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167821586975843,0.189753732724185,0,0,0,0,0,0,0,0,0.593042257361244,0,0,0,0,0,0,0,0,0,0,0,0,7.06520071248115,0,0,0,0,0,0,0,0,0,0,0,7.05142733133628,0.19351266257817,0.146178634172371,0.164230914106418,0,0,0,0,0.19871461170299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211200673038813,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197611631897944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192914038270915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511577485214607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147856086217045,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111231401892069,0,0,0,0,0,0,0,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0.31020638566432,0,0.223710863595585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606229585745915,1.60778478093707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224170287987055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1605880751037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,1.27126825146383,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167821586975843,0.189753732724185,0,0,0,0,0,0,0,0,0.593042257361244,0,0,0,0,0,0,0,0,0,0,0,0,7.06520071248115,0,0,0,0,0,0,0,0,0,0,0,7.05142733133628,0.19351266257817,0.146178634172371,0.164230914106418,0,0,0,0,0.19871461170299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211200673038813,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197611631897944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192914038270915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511577485214607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147856086217045,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111231401892069,0,0,0,0,0,0,0,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0.31020638566432,0,0.223710863595585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606229585745915,1.60778478093707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p1@BC041425 | |short_description=p1@BC041425 | ||
}} | }} |
Latest revision as of 14:09, 29 July 2015
Short description: | p1@BC041425 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_BC041425_5end |
Coexpression cluster: | C2711_embryonic_epithelioid_bronchioalveolar_testis_small_Smooth_adult |
Association with transcript: | -25bp_to_BC041425_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pneumocyte | 1.12e-17 | 3 |
epithelial cell of tracheobronchial tree | 8.85e-07 | 9 |
epithelial cell of lower respiratory tract | 8.85e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 9.18e-26 | 2 |
alveolar duct | 9.18e-26 | 2 |
bronchiole | 9.18e-26 | 2 |
pulmonary alveolus epithelium | 1.12e-17 | 3 |
alveolus | 1.12e-17 | 3 |
pulmonary lobule | 1.12e-17 | 3 |
lobule | 1.12e-17 | 3 |
alveolus of lung | 1.12e-17 | 3 |
alveolar system | 1.12e-17 | 3 |
pulmonary acinus | 1.12e-17 | 3 |
alveolar sac | 1.12e-17 | 3 |
alveolar wall | 1.12e-17 | 3 |
testis | 1.69e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
epithelioid sarcoma | 2.42e-50 | 1 |
mesenchymal cell neoplasm | 5.56e-26 | 2 |
lung adenocarcinoma | 9.18e-26 | 2 |
non-small cell lung carcinoma | 3.60e-11 | 5 |
bronchus cancer | 2.35e-08 | 7 |
bronchogenic carcinoma | 2.35e-08 | 7 |
lung carcinoma | 8.85e-07 | 9 |