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MCL coexpression mm9:88: Difference between revisions

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{{MCL_coexpression_mm9
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|coexpression_dpi_cluster_scores_median=0,0.714975262793003,0.653266672180347,1.05245473268456,1.07952083886739,0.264675322615929,0.286557635189855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.074994677527999,0.164001280677683,0.434999136142762,0.429636616828544,0.317510962857369,0.195919086892867,0.177265236423641,0.0869754197833955,0,0,0,0.19802531727213,0.0667859388724756,0.233389857964334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0893284091371433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1792397770908,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.299127173522388,0.253665468807546,0,0,0,0,0,0,0.168653336497203,0.0662136857075299,0,0.0788034163803455,0.0773548534010084,0,0.156026744954718,0.203420156066496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111087966368681,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0529304404135566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0002563!1.60e-28!9;CL:0002251!1.60e-28!9;CL:0000239!2.50e-20!6;CL:0000677!2.50e-20!6;CL:0000212!2.50e-20!6;CL:0000584!2.50e-20!6;CL:0000075!2.49e-17!7;CL:0000066!6.08e-17!25;CL:0002076!1.77e-16!15;CL:0000223!5.85e-12!20;CL:0000627!7.17e-11!3;CL:0000682!7.17e-11!3;CL:0002250!8.94e-10!3
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000344!3.23e-45!15;UBERON:0000160!4.91e-45!31;UBERON:0001242!7.03e-40!13;UBERON:0000060!7.03e-40!13;UBERON:0001262!7.03e-40!13;UBERON:0004786!7.03e-40!13;UBERON:0005409!6.32e-31!47;UBERON:0003350!1.60e-28!9;UBERON:0004808!1.60e-28!9;UBERON:0001277!1.60e-28!9;UBERON:0004923!4.26e-27!24;UBERON:0000485!4.75e-23!11;UBERON:0002108!2.51e-12!4;UBERON:0001007!3.97e-12!116;UBERON:0001555!3.97e-12!116;UBERON:0007026!3.97e-12!116;UBERON:0004119!7.70e-12!118;UBERON:0000925!7.70e-12!118;UBERON:0006595!7.70e-12!118;UBERON:0004921!4.57e-10!114;UBERON:0000331!1.03e-09!3;UBERON:0002116!1.03e-09!3;UBERON:0001204!1.03e-09!3;UBERON:0001168!1.03e-09!3;UBERON:0001962!9.23e-07!2;UBERON:0001961!9.23e-07!2;UBERON:0001744!9.23e-07!2
}}

Latest revision as of 14:40, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:120912861..120912876,-p@chr10:120912861..120912876
-
Mm9::chr10:80565428..80565433,+p@chr10:80565428..80565433
+
Mm9::chr10:93498194..93498216,+p@chr10:93498194..93498216
+
Mm9::chr11:101536779..101536810,-p@chr11:101536779..101536810
-
Mm9::chr11:102977542..102977549,+p1@Hexim1
Mm9::chr11:115024443..115024449,-p@chr11:115024443..115024449
-
Mm9::chr11:116153789..116153790,-p@chr11:116153789..116153790
-
Mm9::chr11:118914704..118914715,-p@chr11:118914704..118914715
-
Mm9::chr11:118914747..118914751,-p@chr11:118914747..118914751
-
Mm9::chr11:118988052..118988058,+p@chr11:118988052..118988058
+
Mm9::chr11:120478620..120478628,+p@chr11:120478620..120478628
+
Mm9::chr11:58424979..58425002,-p@chr11:58424979..58425002
-
Mm9::chr11:69224899..69224914,+p@chr11:69224899..69224914
+
Mm9::chr11:75386314..75386326,+p@chr11:75386314..75386326
+
Mm9::chr11:84641148..84641158,-p@chr11:84641148..84641158
-
Mm9::chr12:111673239..111673245,-p@chr12:111673239..111673245
-
Mm9::chr12:111682896..111682907,+p@chr12:111682896..111682907
+
Mm9::chr12:111682926..111682958,+p@chr12:111682926..111682958
+
Mm9::chr12:112229809..112229811,+p@chr12:112229809..112229811
+
Mm9::chr12:40668168..40668171,+p@chr12:40668168..40668171
+
Mm9::chr12:70825974..70825991,+p2@Atp5s
Mm9::chr12:78083810..78083813,-p@chr12:78083810..78083813
-
Mm9::chr12:79850576..79850587,-p@chr12:79850576..79850587
-
Mm9::chr12:92934820..92934824,-p@chr12:92934820..92934824
-
Mm9::chr13:101346246..101346253,+p@chr13:101346246..101346253
+
Mm9::chr13:24923530..24923556,+p1@Tdp2
Mm9::chr13:24971734..24971739,+p@chr13:24971734..24971739
+
Mm9::chr13:55480530..55480540,+p5@Rgs14
Mm9::chr13:73870499..73870551,+p2@Slc12a7
Mm9::chr14:22569835..22569846,+p4@Samd8
Mm9::chr14:26286217..26286232,+p@chr14:26286217..26286232
+
Mm9::chr14:35487182..35487200,+p7@Wapal
Mm9::chr14:73507116..73507118,+p@chr14:73507116..73507118
+
Mm9::chr15:103135874..103135880,+p@chr15:103135874..103135880
+
Mm9::chr15:76528391..76528422,-p@chr15:76528391..76528422
-
Mm9::chr15:78729838..78729852,+p4@Sh3bp1
Mm9::chr15:82182200..82182204,+p@chr15:82182200..82182204
+
Mm9::chr15:83305098..83305104,+p@chr15:83305098..83305104
+
Mm9::chr15:84503292..84503296,+p@chr15:84503292..84503296
+
Mm9::chr15:85059289..85059303,+p@chr15:85059289..85059303
+
Mm9::chr15:85502239..85502246,+p@chr15:85502239..85502246
+
Mm9::chr15:85502255..85502267,+p@chr15:85502255..85502267
+
Mm9::chr15:89207489..89207533,-p1@Tymp
Mm9::chr16:17759257..17759264,+p7@Klhl22
Mm9::chr16:78268076..78268083,-p@chr16:78268076..78268083
-
Mm9::chr17:34509216..34509223,+p@chr17:34509216..34509223
+
Mm9::chr17:36266450..36266453,-p2@Gm7030
Mm9::chr17:36282872..36282883,-p2@ENSMUST00000174094
Mm9::chr17:36282884..36282901,-p1@ENSMUST00000174094
Mm9::chr17:56148728..56148743,+p2@Mpnd
Mm9::chr17:74801997..74802007,-p@chr17:74801997..74802007
-
Mm9::chr17:78816982..78816986,-p@chr17:78816982..78816986
-
Mm9::chr17:80318241..80318260,+p@chr17:80318241..80318260
+
Mm9::chr17:8476480..8476499,-p@chr17:8476480..8476499
-
Mm9::chr17:85293136..85293172,+p@chr17:85293136..85293172
+
Mm9::chr18:11052342..11052356,-p@chr18:11052342..11052356
-
Mm9::chr18:32194830..32194834,-p@chr18:32194830..32194834
-
Mm9::chr18:36838912..36838933,-p4@Apbb3
Mm9::chr18:66631168..66631175,-p@chr18:66631168..66631175
-
Mm9::chr18:66635277..66635296,+p@chr18:66635277..66635296
+
Mm9::chr18:75457242..75457248,+p@chr18:75457242..75457248
+
Mm9::chr18:78118270..78118280,+p@chr18:78118270..78118280
+
Mm9::chr19:11893526..11893532,+p@chr19:11893526..11893532
+
Mm9::chr19:12085013..12085024,+p@chr19:12085013..12085024
+
Mm9::chr19:42826949..42827007,-p1@Pyroxd2
Mm9::chr19:42827200..42827211,-p3@Pyroxd2
Mm9::chr19:55942681..55942684,+p@chr19:55942681..55942684
+
Mm9::chr19:6264408..6264418,-p@chr19:6264408..6264418
-
Mm9::chr1:13659869..13659873,-p@chr1:13659869..13659873
-
Mm9::chr1:156931282..156931291,-p@chr1:156931282..156931291
-
Mm9::chr1:166388648..166388661,+p@chr1:166388648..166388661
+
Mm9::chr1:166388667..166388678,+p@chr1:166388667..166388678
+
Mm9::chr1:174412343..174412362,+p1@Igsf9
Mm9::chr1:192735744..192735752,+p@chr1:192735744..192735752
+
Mm9::chr1:194639232..194639234,+p@chr1:194639232..194639234
+
Mm9::chr1:82823582..82823586,-p@chr1:82823582..82823586
-
Mm9::chr2:164257708..164257721,-p@chr2:164257708..164257721
-
Mm9::chr2:24234641..24234644,+p@chr2:24234641..24234644
+
Mm9::chr2:31008686..31008692,-p@chr2:31008686..31008692
-
Mm9::chr2:33323607..33323635,+p@chr2:33323607..33323635
+
Mm9::chr2:75543070..75543079,-p7@Nfe2l2
Mm9::chr2:76337146..76337155,+p5@Osbpl6
Mm9::chr3:101330969..101330979,+p@chr3:101330969..101330979
+
Mm9::chr3:104598813..104598825,+p@chr3:104598813..104598825
+
Mm9::chr3:122122784..122122790,+p5@Bcar3
Mm9::chr3:122122903..122122918,+p1@Bcar3
Mm9::chr3:35620179..35620188,+p@chr3:35620179..35620188
+
Mm9::chr3:88940530..88940551,+p2@Pklr
Mm9::chr3:89197781..89197786,+p3@Gm15417
Mm9::chr3:94591575..94591586,+p@chr3:94591575..94591586
+
Mm9::chr4:106403563..106403580,-p2@Heatr8
Mm9::chr4:119211745..119211756,+p@chr4:119211745..119211756
+
Mm9::chr4:128908952..128908957,+p@chr4:128908952..128908957
+
Mm9::chr4:133092684..133092699,-p@chr4:133092684..133092699
-
Mm9::chr4:133369317..133369320,+p@chr4:133369317..133369320
+
Mm9::chr4:141179191..141179200,+p@chr4:141179191..141179200
+
Mm9::chr4:149283679..149283684,-p9@Spsb1
Mm9::chr4:149283692..149283721,-p3@Spsb1
Mm9::chr4:155029114..155029133,-p@chr4:155029114..155029133
-
Mm9::chr4:49562541..49562577,+p@chr4:49562541..49562577
+
Mm9::chr4:62163210..62163216,-p3@Hdhd3
Mm9::chr5:120120847..120120853,-p@chr5:120120847..120120853
-
Mm9::chr5:125638808..125638814,+p@chr5:125638808..125638814
+
Mm9::chr5:135442349..135442362,-p@chr5:135442349..135442362
-
Mm9::chr5:136252496..136252506,+p@chr5:136252496..136252506
+
Mm9::chr5:143579562..143579565,+p@chr5:143579562..143579565
+
Mm9::chr5:143580673..143580682,+p@chr5:143580673..143580682
+
Mm9::chr5:31252294..31252314,-p@chr5:31252294..31252314
-
Mm9::chr5:32498331..32498334,-p@chr5:32498331..32498334
-
Mm9::chr5:64219055..64219063,-p@chr5:64219055..64219063
-
Mm9::chr5:66443992..66444014,-p@chr5:66443992..66444014
-
Mm9::chr5:66444364..66444375,+p@chr5:66444364..66444375
+
Mm9::chr5:66444377..66444388,+p@chr5:66444377..66444388
+
Mm9::chr6:124865590..124865633,-p3@Ptms
Mm9::chr6:137486449..137486455,+p@chr6:137486449..137486455
+
Mm9::chr6:28376294..28376320,+p@chr6:28376294..28376320
+
Mm9::chr6:50406084..50406173,-p1@Osbpl3
Mm9::chr6:53989882..53989886,-p@chr6:53989882..53989886
-
Mm9::chr7:116744296..116744298,-p@chr7:116744296..116744298
-
Mm9::chr7:120350606..120350625,-p@chr7:120350606..120350625
-
Mm9::chr7:125850861..125850866,-p@chr7:125850861..125850866
-
Mm9::chr7:17001020..17001024,+p@chr7:17001020..17001024
+
Mm9::chr7:20382267..20382282,+p@chr7:20382267..20382282
+
Mm9::chr7:26179306..26179326,+p4@4732471J01Rik
Mm9::chr7:29940690..29940710,+p2@ENSMUST00000053062
Mm9::chr7:65713901..65713906,+p@chr7:65713901..65713906
+
Mm9::chr7:96869911..96869915,+p@chr7:96869911..96869915
+
Mm9::chr8:107365938..107365944,+p@chr8:107365938..107365944
+
Mm9::chr8:117710565..117710568,+p@chr8:117710565..117710568
+
Mm9::chr8:118231881..118231887,+p@chr8:118231881..118231887
+
Mm9::chr8:122335239..122335244,+p@chr8:122335239..122335244
+
Mm9::chr8:125098705..125098710,+p@chr8:125098705..125098710
+
Mm9::chr8:41597143..41597216,+p1@Vps37a
Mm9::chr8:79425908..79425922,-p@chr8:79425908..79425922
-
Mm9::chr8:97726675..97726685,-p@chr8:97726675..97726685
-
Mm9::chr9:121207864..121207875,+p@chr9:121207864..121207875
+
Mm9::chr9:121207894..121207918,+p@chr9:121207894..121207918
+
Mm9::chr9:121551844..121551875,+p2@Vipr1
Mm9::chr9:121551886..121551901,+p1@Vipr1
Mm9::chr9:51123998..51124004,+p@chr9:51123998..51124004
+
Mm9::chr9:53619482..53619494,+p5@Slc35f2
Mm9::chr9:7872951..7872976,+p@chr9:7872951..7872976
+
Mm9::chr9:95715941..95715947,+p@chr9:95715941..95715947
+
Mm9::chrX:39502204..39502218,-p@chrX:39502204..39502218
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
mucosa3.23e-4515
intestine4.91e-4531
intestinal mucosa7.03e-4013
anatomical wall7.03e-4013
wall of intestine7.03e-4013
gastrointestinal system mucosa7.03e-4013
gastrointestinal system6.32e-3147
epithelium of mucosa1.60e-289
gastrointestinal system epithelium1.60e-289
intestinal epithelium1.60e-289
organ component layer4.26e-2724
simple columnar epithelium4.75e-2311
small intestine2.51e-124
digestive system3.97e-12116
digestive tract3.97e-12116
primitive gut3.97e-12116
endoderm-derived structure7.70e-12118
endoderm7.70e-12118
presumptive endoderm7.70e-12118
subdivision of digestive tract4.57e-10114
ileal mucosa1.03e-093
ileum1.03e-093
mucosa of small intestine1.03e-093
wall of small intestine1.03e-093
gut-associated lymphoid tissue9.23e-072
mucosa-associated lymphoid tissue9.23e-072
lymphoid tissue9.23e-072


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.532209
MA0004.11.11675
MA0006.10.290706
MA0007.10.793448
MA0009.10.575666
MA0014.10.0870176
MA0017.110.7362
MA0019.10.401385
MA0024.10.104234
MA0025.10.361853
MA0027.11.27344
MA0028.10.110691
MA0029.10.706273
MA0030.10.447014
MA0031.10.623574
MA0038.10.188964
MA0040.10.143619
MA0041.10.00362299
MA0042.10.0197458
MA0043.10.215442
MA0046.16.61445
MA0048.10.21775
MA0050.10.0656978
MA0051.10.525366
MA0052.10.623804
MA0055.10.115476
MA0056.10
MA0057.10.640127
MA0058.10.516365
MA0059.10.436925
MA0060.12.70218
MA0061.10.825286
MA0063.10
MA0066.10.666931
MA0067.10.504194
MA0068.10.810767
MA0069.10.346721
MA0070.10.332127
MA0071.10.671726
MA0072.10.31961
MA0073.10.0451238
MA0074.10.358428
MA0076.10.124869
MA0077.10.288663
MA0078.10.426313
MA0081.10.06605
MA0083.12.27584
MA0084.10.389496
MA0087.10.176117
MA0088.10.121874
MA0089.10
MA0090.10.513451
MA0091.10.398379
MA0092.10.254094
MA0093.11.16246
MA0095.10
MA0098.10
MA0100.10.202136
MA0101.10.347656
MA0103.11.3603
MA0105.10.532679
MA0106.10.0645869
MA0107.10.56554
MA0108.23.6709
MA0109.10
MA0111.10.579298
MA0113.10.0492361
MA0114.113.7583
MA0115.12.29587
MA0116.11.37529
MA0117.10.188602
MA0119.10.813644
MA0122.10.206482
MA0124.10.140394
MA0125.11.15318
MA0130.10
MA0131.10.0358481
MA0132.10
MA0133.10
MA0135.11.8976
MA0136.10.150113
MA0139.10.632119
MA0140.10.488874
MA0141.10.573247
MA0142.10.0143535
MA0143.10.0179177
MA0144.10.0168256
MA0145.10.466879
MA0146.10.450657
MA0147.10.22616
MA0148.10.173249
MA0149.10.00111927
MA0062.20.031144
MA0035.20.943005
MA0039.21.8362
MA0138.20.209783
MA0002.20.348272
MA0137.20.0497396
MA0104.20.271197
MA0047.20.0952919
MA0112.20.639
MA0065.25.75311
MA0150.10.307688
MA0151.10
MA0152.10.187953
MA0153.12.58066
MA0154.10.780413
MA0155.10.494307
MA0156.10.0749467
MA0157.10.50014
MA0158.10
MA0159.11.25659
MA0160.11.00641
MA0161.10
MA0162.10.339651
MA0163.10.563545
MA0164.10.0290276
MA0080.20.0597831
MA0018.20.444169
MA0099.20.827667
MA0079.20.267341
MA0102.20.430603
MA0258.10.977099
MA0259.10.848135
MA0442.10
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