FFCP PHASE1:Hg19::chr2:218990761..218990809,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr2:218990761..218990809,+
|short_description=p1@CXCR2
|description=CAGE_peak_1_at_CXCR2_5end
|association_with_transcript=9bp_to_uc002vhb.1_5end
|EntrezGene=...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3579 | |EntrezGene=3579 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6027 | |HGNC=6027 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=9bp_to_uc002vhb.1_5end | |||
|cluster_id=chr2:218990761..218990809,+ | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_1_at_CXCR2_5end | |||
|id=chr2:218990761..218990809,+ | |||
|ontology_enrichment_celltype=CL:0002057!4.69e-18!42;CL:0000860!3.46e-16!45;CL:0000766!7.73e-15!76;CL:0000738!2.38e-14!140;CL:0000037!3.78e-14!172;CL:0000566!3.78e-14!172;CL:0002087!2.49e-13!119;CL:0002032!5.06e-13!165;CL:0000837!5.06e-13!165;CL:0002194!1.16e-12!63;CL:0000576!1.16e-12!63;CL:0000040!1.16e-12!63;CL:0000559!1.16e-12!63;CL:0000763!2.53e-12!112;CL:0000049!2.53e-12!112;CL:0000988!2.59e-12!182;CL:0002009!5.78e-12!65;CL:0000839!2.08e-10!70;CL:0002031!2.83e-10!124;CL:0000557!3.97e-10!71 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.17e-19;33!CL:0002057;1.17e-19;33!CL:0000473;4.52e-13;39!CL:0000234;4.52e-13;39!CL:0000775;1.61e-09;3!CL:0000094;7.02e-09;8!CL:0000576;1.00e-08;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.70e-16,42;CL:0002057,3.70e-16,42;CL:0000473,1.61e-13,48;CL:0000234,1.61e-13,48;CL:0000766,1.63e-13,72;CL:0000738,2.65e-13,136;CL:0002032,3.58e-13,161;CL:0000837,3.58e-13,161;CL:0000037,3.72e-13,168;CL:0000988,5.61e-12,177;CL:0000763,2.06e-11,108;CL:0000049,2.06e-11,108;CL:0002087,2.69e-11,115;CL:0002194,7.29e-10,59;CL:0000576,7.29e-10,59;CL:0000040,7.29e-10,59;CL:0000559,7.29e-10,59;CL:0002031,1.41e-09,120;CL:0000775,1.62e-09,3;CL:0002009,2.13e-09,61;CL:0000094,7.04e-09,8;CL:0000839,2.33e-08,66;CL:0000557,3.60e-08,67 | |||
|ontology_enrichment_development_v019=CL:0002057;2.00e-11;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.59e-52!115;UBERON:0002390!3.48e-16!102;UBERON:0003061!3.48e-16!102;UBERON:0002193!3.21e-15!112;UBERON:0001049!3.49e-13!57;UBERON:0005068!3.49e-13!57;UBERON:0006241!3.49e-13!57;UBERON:0007135!3.49e-13!57;UBERON:0000178!2.05e-11!15;UBERON:0000179!2.05e-11!15;UBERON:0000463!2.05e-11!15;UBERON:0002616!1.03e-09!59;UBERON:0002780!1.72e-09!41;UBERON:0001890!1.72e-09!41;UBERON:0006240!1.72e-09!41;UBERON:0003080!4.09e-09!42;UBERON:0003075!9.66e-09!86;UBERON:0007284!9.66e-09!86;UBERON:0002371!5.98e-08!80;UBERON:0002346!6.38e-08!90;UBERON:0002020!9.95e-08!34;UBERON:0003528!9.95e-08!34;UBERON:0000955!1.51e-07!69;UBERON:0006238!1.51e-07!69;UBERON:0001893!1.75e-07!34;UBERON:0001017!2.01e-07!82;UBERON:0005743!2.73e-07!86;UBERON:0002791!4.61e-07!33;UBERON:0001474!8.62e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.48e-17;15!UBERON:0000179;4.48e-17;15!UBERON:0000463;4.48e-17;15!UBERON:0002390;2.68e-09;32!UBERON:0002193;6.33e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.85e-17,114;UBERON:0000178,4.54e-17,15;UBERON:0000179,4.54e-17,15;UBERON:0000463,4.54e-17,15;UBERON:0002193,1.05e-16,108;UBERON:0002390,1.52e-16,98;UBERON:0003061,1.52e-16,98;UBERON:0002405,6.46e-08,93 | |||
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| ||
|short_description=p1@CXCR2 | |||
}} | }} |
Latest revision as of 15:49, 24 September 2015
Short description: | p1@CXCR2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CXCR2_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 9bp_to_uc002vhb.1_5end |
EntrezGene: | CXCR2 |
HGNC: | 6027 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.70e-16 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.70e-16 | 42 |
defensive cell | 1.61e-13 | 48 |
phagocyte | 1.61e-13 | 48 |
myeloid leukocyte | 1.63e-13 | 72 |
leukocyte | 2.65e-13 | 136 |
hematopoietic oligopotent progenitor cell | 3.58e-13 | 161 |
hematopoietic multipotent progenitor cell | 3.58e-13 | 161 |
hematopoietic stem cell | 3.72e-13 | 168 |
hematopoietic cell | 5.61e-12 | 177 |
myeloid cell | 2.06e-11 | 108 |
common myeloid progenitor | 2.06e-11 | 108 |
nongranular leukocyte | 2.69e-11 | 115 |
monopoietic cell | 7.29e-10 | 59 |
monocyte | 7.29e-10 | 59 |
monoblast | 7.29e-10 | 59 |
promonocyte | 7.29e-10 | 59 |
hematopoietic lineage restricted progenitor cell | 1.41e-09 | 120 |
neutrophil | 1.62e-09 | 3 |
macrophage dendritic cell progenitor | 2.13e-09 | 61 |
granulocyte | 7.04e-09 | 8 |
myeloid lineage restricted progenitor cell | 2.33e-08 | 66 |
granulocyte monocyte progenitor cell | 3.60e-08 | 67 |
Ontology term | p-value | n |
---|---|---|
adult organism | 3.85e-17 | 114 |
blood | 4.54e-17 | 15 |
haemolymphatic fluid | 4.54e-17 | 15 |
organism substance | 4.54e-17 | 15 |
hemolymphoid system | 1.05e-16 | 108 |
hematopoietic system | 1.52e-16 | 98 |
blood island | 1.52e-16 | 98 |
immune system | 6.46e-08 | 93 |