FFCP PHASE1:Hg19::chr5:110560147..110560156,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr5:110560147..110560156,+
|short_description=p5@CAMK4
|description=CAGE_peak_5_at_CAMK4_5end
|association_with_transcript=-5bp_to_ENST00000504090_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=814 | |EntrezGene=814 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1464 | |HGNC=1464 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-5bp_to_ENST00000504090_5end | |||
|cluster_id=chr5:110560147..110560156,+ | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_5_at_CAMK4_5end | |||
|id=chr5:110560147..110560156,+ | |||
|ontology_enrichment_celltype=CL:0000084!4.71e-23!25;CL:0000827!4.71e-23!25;CL:0000542!1.47e-21!53;CL:0000051!1.47e-21!53;CL:0000838!7.68e-21!52;CL:0000791!1.11e-18!18;CL:0000789!1.11e-18!18;CL:0002420!1.11e-18!18;CL:0002419!1.11e-18!18;CL:0000790!1.11e-18!18;CL:0002087!1.15e-13!119;CL:0000625!2.29e-12!11;CL:0000738!6.18e-12!140;CL:0002031!4.47e-10!124;CL:0000624!7.04e-08!6 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.20e-36;18!CL:0000789;1.20e-36;18!CL:0002419;1.20e-36;18!CL:0000084;7.25e-35;25!CL:0000625;2.78e-25;11!CL:0000624;1.97e-15;6!CL:0000542;1.30e-14;53!CL:0000898;1.24e-08;3!CL:0000226;7.11e-08;3!CL:0000842;7.11e-08;3!CL:0000623;3.11e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.19e-36,18;CL:0000789,1.19e-36,18;CL:0002420,1.19e-36,18;CL:0002419,1.19e-36,18;CL:0000790,1.19e-36,18;CL:0000084,7.55e-35,25;CL:0000827,7.55e-35,25;CL:0000542,2.65e-27,53;CL:0000051,2.65e-27,53;CL:0000838,5.97e-26,52;CL:0000625,2.74e-25,11;CL:0000624,1.98e-15,6;CL:0002087,7.25e-14,115;CL:0000738,3.35e-12,136;CL:0002031,3.16e-09,120;CL:0000898,1.32e-08,3;CL:0000037,3.43e-08,168;CL:0000226,6.88e-08,3;CL:0000842,6.88e-08,3;CL:0000623,2.21e-07,3;CL:0000825,2.21e-07,3;CL:0000988,2.38e-07,177 | |||
|ontology_enrichment_development_v019=CL:0000790;1.20e-36;18!CL:0000051;1.30e-14;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.76e-23!115;UBERON:0001893!2.29e-17!34;UBERON:0002780!2.40e-17!41;UBERON:0001890!2.40e-17!41;UBERON:0006240!2.40e-17!41;UBERON:0001869!7.61e-17!32;UBERON:0002791!8.89e-17!33;UBERON:0003080!1.16e-16!42;UBERON:0002020!3.31e-16!34;UBERON:0003528!3.31e-16!34;UBERON:0001049!1.16e-15!57;UBERON:0005068!1.16e-15!57;UBERON:0006241!1.16e-15!57;UBERON:0007135!1.16e-15!57;UBERON:0001017!4.10e-14!82;UBERON:0002616!9.48e-14!59;UBERON:0002619!1.36e-13!22;UBERON:0005743!2.50e-13!86;UBERON:0000955!2.65e-13!69;UBERON:0006238!2.65e-13!69;UBERON:0000073!6.73e-13!94;UBERON:0001016!6.73e-13!94;UBERON:0001950!1.48e-12!20;UBERON:0000956!3.24e-12!25;UBERON:0000203!3.24e-12!25;UBERON:0003056!1.61e-11!61;UBERON:0003075!2.40e-11!86;UBERON:0007284!2.40e-11!86;UBERON:0002346!3.20e-10!90;UBERON:0000178!6.73e-10!15;UBERON:0000179!6.73e-10!15;UBERON:0000463!6.73e-10!15;UBERON:0000153!7.73e-09!129;UBERON:0007811!7.73e-09!129;UBERON:0002420!3.18e-07!9;UBERON:0007245!3.18e-07!9;UBERON:0010009!3.18e-07!9;UBERON:0010011!3.18e-07!9;UBERON:0000454!3.18e-07!9;UBERON:0000033!8.46e-07!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.55e-16;15!UBERON:0000179;3.55e-16;15!UBERON:0000463;3.55e-16;15!UBERON:0002390;5.26e-10;32!UBERON:0002791;1.44e-08;32!UBERON:0002619;1.60e-08;22!UBERON:0001869;2.78e-08;32!UBERON:0001950;7.53e-08;20!UBERON:0002193;8.24e-08;42!UBERON:0000956;2.73e-07;25!UBERON:0000203;2.73e-07;25!UBERON:0003528;2.93e-07;34!UBERON:0002020;2.93e-07;34!UBERON:0001893;4.25e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.84e-16,15;UBERON:0000179,2.84e-16,15;UBERON:0000463,2.84e-16,15;UBERON:0002791,6.83e-09,32;UBERON:0001869,6.83e-09,32;UBERON:0002619,1.95e-08,22;UBERON:0003528,3.27e-08,34;UBERON:0002020,3.27e-08,34;UBERON:0001893,3.27e-08,34;UBERON:0001950,9.84e-08,20;UBERON:0000956,3.24e-07,25;UBERON:0000203,3.24e-07,25 | |||
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| ||
|short_description=p5@CAMK4 | |||
}} | }} |
Latest revision as of 17:10, 19 September 2015
Short description: | p5@CAMK4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_CAMK4_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | -5bp_to_ENST00000504090_5end |
EntrezGene: | CAMK4 |
HGNC: | 1464 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.19e-36 | 18 |
alpha-beta T cell | 1.19e-36 | 18 |
immature T cell | 1.19e-36 | 18 |
mature T cell | 1.19e-36 | 18 |
immature alpha-beta T cell | 1.19e-36 | 18 |
T cell | 7.55e-35 | 25 |
pro-T cell | 7.55e-35 | 25 |
lymphocyte | 2.65e-27 | 53 |
common lymphoid progenitor | 2.65e-27 | 53 |
lymphoid lineage restricted progenitor cell | 5.97e-26 | 52 |
CD8-positive, alpha-beta T cell | 2.74e-25 | 11 |
CD4-positive, alpha-beta T cell | 1.98e-15 | 6 |
nongranular leukocyte | 7.25e-14 | 115 |
leukocyte | 3.35e-12 | 136 |
hematopoietic lineage restricted progenitor cell | 3.16e-09 | 120 |
naive T cell | 1.32e-08 | 3 |
hematopoietic stem cell | 3.43e-08 | 168 |
single nucleate cell | 6.88e-08 | 3 |
mononuclear cell | 6.88e-08 | 3 |
natural killer cell | 2.21e-07 | 3 |
pro-NK cell | 2.21e-07 | 3 |
hematopoietic cell | 2.38e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
blood | 2.84e-16 | 15 |
haemolymphatic fluid | 2.84e-16 | 15 |
organism substance | 2.84e-16 | 15 |
regional part of telencephalon | 6.83e-09 | 32 |
cerebral hemisphere | 6.83e-09 | 32 |
regional part of cerebral cortex | 1.95e-08 | 22 |
brain grey matter | 3.27e-08 | 34 |
gray matter | 3.27e-08 | 34 |
telencephalon | 3.27e-08 | 34 |
neocortex | 9.84e-08 | 20 |
cerebral cortex | 3.24e-07 | 25 |
pallium | 3.24e-07 | 25 |