FFCP PHASE1:Hg19::chr6:33589135..33589157,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:33589135..33589157,+
|short_description=p2@ITPR3
|description=CAGE_peak_2_at_ITPR3_5end
|association_with_transcript=0bp_to_NM_002224_5end
|EntrezGene=371...") |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3710 | |EntrezGene=3710 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=6182 | |HGNC=6182 | ||
|TSSclassifier=strong | |||
|UniProt=A6H8K3,Q14573,Q59ES2 | |UniProt=A6H8K3,Q14573,Q59ES2 | ||
|association_with_transcript=0bp_to_NM_002224_5end | |||
|cluster_id=chr6:33589135..33589157,+ | |||
|description=CAGE_peak_2_at_ITPR3_5end | |||
|id=chr6:33589135..33589157,+ | |||
|ontology_enrichment_celltype=CL:0000066!4.59e-36!254;CL:0000838!1.61e-13!52;CL:0000542!1.76e-13!53;CL:0000051!1.76e-13!53;CL:0000076!1.49e-11!62;CL:0002076!2.19e-11!43;CL:0000223!5.36e-10!59;CL:0000945!2.95e-07!24;CL:0000826!2.95e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0002076;2.26e-09;42!CL:0000542;3.45e-08;53!CL:0000945;4.05e-07;24!CL:0002251;6.89e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.17e-38,253;CL:0000838,1.61e-14,52;CL:0000542,1.77e-14,53;CL:0000051,1.77e-14,53;CL:0000076,2.56e-12,63;CL:0002076,4.90e-12,42;CL:0000223,1.23e-10,58;CL:0000945,1.30e-07,24;CL:0000826,1.30e-07,24;CL:0002251,6.10e-07,20;CL:0000084,8.26e-07,25;CL:0000827,8.26e-07,25 | |||
|ontology_enrichment_development_v019=CL:0000051;3.45e-08;53 | |||
|ontology_enrichment_disease=DOID:305!6.76e-20!106;DOID:0050687!1.04e-14!143;DOID:162!1.86e-12!235;DOID:14566!1.98e-12!239;DOID:1749!1.65e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.51e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.88e-22,106;DOID:0050687,2.77e-16,143;DOID:162,4.52e-14,235;DOID:14566,6.72e-14,239;DOID:1749,2.61e-08,14;DOID:299,8.44e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.90e-14!169;UBERON:0000925!2.90e-14!169;UBERON:0006595!2.90e-14!169;UBERON:0001007!4.64e-11!155;UBERON:0001555!4.64e-11!155;UBERON:0007026!4.64e-11!155;UBERON:0000464!5.27e-10!104;UBERON:0001004!1.95e-09!72;UBERON:0000077!9.34e-09!130;UBERON:0004921!1.20e-08!129;UBERON:0004185!1.20e-08!129;UBERON:0000065!8.29e-08!53;UBERON:0000466!1.51e-07!126;UBERON:0001041!2.11e-07!98 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,2.53e-12,160;UBERON:0000925,2.53e-12,160;UBERON:0006595,2.53e-12,160;UBERON:0001007,2.28e-09,145;UBERON:0001555,2.28e-09,145;UBERON:0007026,2.28e-09,145;UBERON:0001004,1.13e-08,74;UBERON:0004921,7.57e-08,118;UBERON:0000065,2.31e-07,54;UBERON:0005911,4.01e-07,82;UBERON:0001041,7.43e-07,87 | |||
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| ||
|short_description=p2@ITPR3 | |||
}} | }} |
Latest revision as of 07:56, 18 September 2015
Short description: | p2@ITPR3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ITPR3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_NM_002224_5end |
EntrezGene: | ITPR3 |
HGNC: | 6182 |
UniProt: | A6H8K3Q14573Q59ES2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.17e-38 | 253 |
lymphoid lineage restricted progenitor cell | 1.61e-14 | 52 |
lymphocyte | 1.77e-14 | 53 |
common lymphoid progenitor | 1.77e-14 | 53 |
squamous epithelial cell | 2.56e-12 | 63 |
endo-epithelial cell | 4.90e-12 | 42 |
endodermal cell | 1.23e-10 | 58 |
lymphocyte of B lineage | 1.30e-07 | 24 |
pro-B cell | 1.30e-07 | 24 |
epithelial cell of alimentary canal | 6.10e-07 | 20 |
T cell | 8.26e-07 | 25 |
pro-T cell | 8.26e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 2.53e-12 | 160 |
endoderm | 2.53e-12 | 160 |
presumptive endoderm | 2.53e-12 | 160 |
digestive system | 2.28e-09 | 145 |
digestive tract | 2.28e-09 | 145 |
primitive gut | 2.28e-09 | 145 |
respiratory system | 1.13e-08 | 74 |
subdivision of digestive tract | 7.57e-08 | 118 |
respiratory tract | 2.31e-07 | 54 |
endo-epithelium | 4.01e-07 | 82 |
foregut | 7.43e-07 | 87 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.88e-22 | 106 |
cell type cancer | 2.77e-16 | 143 |
cancer | 4.52e-14 | 235 |
disease of cellular proliferation | 6.72e-14 | 239 |
squamous cell carcinoma | 2.61e-08 | 14 |
adenocarcinoma | 8.44e-07 | 25 |