FFCP PHASE1:Hg19::chr6:49604528..49604539,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:49604528..49604539,-
|short_description=p3@RHAG
|description=CAGE_peak_3_at_RHAG_5end
|association_with_transcript=12bp_to_ENST00000229810,ENST00000371175,...") |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6005 | |EntrezGene=6005 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10006 | |HGNC=10006 | ||
|TSSclassifier=strong | |||
|UniProt=O43515,Q02094,E9PC36,F5H250 | |UniProt=O43515,Q02094,E9PC36,F5H250 | ||
|association_with_transcript=12bp_to_ENST00000229810,ENST00000371175,ENST00000418071,ENST00000539403_5end | |||
|cluster_id=chr6:49604528..49604539,- | |||
|coexpression_cluster_id=C33 | |||
|description=CAGE_peak_3_at_RHAG_5end | |||
|id=chr6:49604528..49604539,- | |||
|ontology_enrichment_celltype=CL:0000764!6.22e-11!2;CL:0000765!6.22e-11!2;CL:0000050!6.22e-11!2;CL:0000038!6.22e-11!2;CL:0000558!6.22e-11!2;CL:0000547!6.22e-11!2;CL:0000549!6.22e-11!2;CL:0000550!6.22e-11!2;CL:0000552!6.22e-11!2 | |||
|ontology_enrichment_celltype_v019=CL:0000764;8.70e-23;2!CL:0000558;8.70e-23;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000764,8.70e-23,2;CL:0000765,8.70e-23,2;CL:0000050,8.70e-23,2;CL:0000038,8.70e-23,2;CL:0000558,8.70e-23,2;CL:0000547,8.70e-23,2;CL:0000549,8.70e-23,2;CL:0000550,8.70e-23,2;CL:0000552,8.70e-23,2;CL:0000763,1.47e-14,108;CL:0000049,1.47e-14,108;CL:0002032,3.78e-09,161;CL:0000837,3.78e-09,161;CL:0000037,1.10e-08,168;CL:0000988,3.81e-08,177 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1036!1.23e-28!8;DOID:8692!4.27e-23!31;DOID:1240!9.39e-18!39;DOID:2531!6.81e-13!51;DOID:0060083!6.81e-13!51 | |||
|ontology_enrichment_disease_v019=DOID:1036;1.22e-47;8!DOID:8692;7.38e-39;31!DOID:1240;2.86e-24;39!DOID:2531;5.39e-17;51!DOID:0060083;5.39e-17;51!DOID:8552;6.97e-12;1!DOID:9119;9.61e-12;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1036,1.22e-47,8;DOID:8692,1.25e-39,31;DOID:1240,3.32e-31,39;DOID:2531,1.62e-23,51;DOID:0060083,1.62e-23,51;DOID:8552,7.76e-12,1;DOID:9119,9.61e-12,1;DOID:0050686,1.09e-07,137 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.44e-08!115;UBERON:0000178!2.03e-07!15;UBERON:0000179!2.03e-07!15;UBERON:0000463!2.03e-07!15 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.47752944117631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,179.793098849666,178.560413050007,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0.507447609232169,1.52927441428475,0,0.476463550915578,0,0.648473311192717,1.08006287447623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.556812347790485,19.693983831634,18.3909861363669,6.99451132795422,19.7381807122989,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0,0,0,0,0,0,0,0,0.31396051279005,19.2805551004181,42.8631755172643,49.9959462510236,40.6128240481539,128.273523321549,33.6945547438403,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0.394584402849391,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0.403100834920358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24.709848745551,0,0,0,5.30027555648885,0,0,0,0,0.106787412567695,2.04365596629566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218559560503957,0,0,0,0,0,0,0,0,3.02952073475813,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0.372448285775147,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.47752944117631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,179.793098849666,178.560413050007,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0.507447609232169,1.52927441428475,0,0.476463550915578,0,0.648473311192717,1.08006287447623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.556812347790485,19.693983831634,18.3909861363669,6.99451132795422,19.7381807122989,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0,0,0,0,0,0,0,0,0.31396051279005,19.2805551004181,42.8631755172643,49.9959462510236,40.6128240481539,128.273523321549,33.6945547438403,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0.394584402849391,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0.403100834920358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24.709848745551,0,0,0,5.30027555648885,0,0,0,0,0.106787412567695,2.04365596629566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218559560503957,0,0,0,0,0,0,0,0,3.02952073475813,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0.372448285775147,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | ||
|short_description=p3@RHAG | |||
}} | }} |
Latest revision as of 04:49, 19 September 2015
Short description: | p3@RHAG |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RHAG_5end |
Coexpression cluster: | C33_Reticulocytes_liver_Whole_blood_chronic_acute_spleen |
Association with transcript: | 12bp_to_ENST00000229810, ENST00000371175, ENST00000418071, ENST00000539403_5end |
EntrezGene: | RHAG |
HGNC: | 10006 |
UniProt: | O43515Q02094E9PC36F5H250 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
erythroid lineage cell | 8.70e-23 | 2 |
erythroblast | 8.70e-23 | 2 |
megakaryocyte-erythroid progenitor cell | 8.70e-23 | 2 |
erythroid progenitor cell | 8.70e-23 | 2 |
reticulocyte | 8.70e-23 | 2 |
proerythroblast | 8.70e-23 | 2 |
basophilic erythroblast | 8.70e-23 | 2 |
polychromatophilic erythroblast | 8.70e-23 | 2 |
orthochromatic erythroblast | 8.70e-23 | 2 |
myeloid cell | 1.47e-14 | 108 |
common myeloid progenitor | 1.47e-14 | 108 |
hematopoietic oligopotent progenitor cell | 3.78e-09 | 161 |
hematopoietic multipotent progenitor cell | 3.78e-09 | 161 |
hematopoietic stem cell | 1.10e-08 | 168 |
hematopoietic cell | 3.81e-08 | 177 |
Ontology term | p-value | n |
---|---|---|
chronic leukemia | 1.22e-47 | 8 |
myeloid leukemia | 1.25e-39 | 31 |
leukemia | 3.32e-31 | 39 |
hematologic cancer | 1.62e-23 | 51 |
immune system cancer | 1.62e-23 | 51 |
chronic myeloid leukemia | 7.76e-12 | 1 |
acute myeloid leukemia | 9.61e-12 | 1 |
organ system cancer | 1.09e-07 | 137 |