FFCP PHASE1:Hg19::chr7:150065733..150065752,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr7:150065733..150065752,+
|short_description=p4@REPIN1,p4@ZNF775
|description=CAGE_peak_4_at_REPIN1_5end,CAGE_peak_4_at_ZNF775_5end
|association_with_transcri...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=29803,285971 | |EntrezGene=29803,285971 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17922,28501 | |HGNC=17922,28501 | ||
|TSSclassifier=strong | |||
|UniProt=Q9BWE0,C9JVG2,C9J3L7 | |UniProt=Q9BWE0,C9JVG2,C9J3L7 | ||
|association_with_transcript=-126bp_to_ENST00000397281,ENST00000444957,ENST00000478789,NM_001099695,NM_001099696,NM_013400,uc003whc.2,uc010lpq.1,uc010lpr.1_5end | |||
|cluster_id=chr7:150065733..150065752,+ | |||
|description=CAGE_peak_4_at_REPIN1_5end,CAGE_peak_4_at_ZNF775_5end | |||
|id=chr7:150065733..150065752,+ | |||
|ontology_enrichment_celltype=CL:0000133!3.37e-09!59;CL:0002319!1.73e-08!25;CL:0000333!1.25e-07!41;CL:0000066!5.43e-07!254;CL:0000147!5.48e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0002319;2.38e-12;25!CL:0000147;5.33e-12;14!CL:0002322;4.34e-10;5!CL:0000148;1.76e-08;10!CL:0000540;3.71e-08;6!CL:0000404;3.71e-08;6!CL:0002605;6.54e-07;3!CL:0000128;7.76e-07;7!CL:0000126;7.76e-07;7!CL:0000127;7.76e-07;7!CL:0002586;8.60e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,2.09e-12,25;CL:0000147,3.03e-12,14;CL:0000133,1.92e-11,59;CL:0002322,2.24e-10,5;CL:0000333,1.43e-09,41;CL:0000047,1.48e-08,8;CL:0000148,1.76e-08,10;CL:0000541,1.76e-08,10;CL:0000221,2.49e-08,72;CL:0000540,3.43e-08,6;CL:0000031,3.43e-08,6;CL:0000404,3.43e-08,6;CL:0002586,3.60e-07,3;CL:0002605,4.23e-07,3;CL:0000128,4.85e-07,7;CL:0000126,4.85e-07,7;CL:0000127,4.85e-07,7;CL:0002453,4.85e-07,7 | |||
|ontology_enrichment_development_v019=CL:0000031;3.71e-08;6!CL:0000133;3.85e-07;59 | |||
|ontology_enrichment_disease=DOID:162!6.16e-13!235;DOID:14566!3.22e-12!239;DOID:305!3.36e-07!106;DOID:0050687!3.63e-07!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0001781;8.60e-07;3!UBERON:0001782;8.60e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001782,3.60e-07,3;UBERON:0005424,3.60e-07,3 | |||
|phase1_expression=0.363356758541113,0,0.140954404095971,0,0,0,0,0,0.261185628199839,0.245733936501509,2.09340350391728,0,0.263766978228454,0.123766352960047,0,0,0,0,0,1.23121058076788,0.408001382488506,1.56727360739044,3.43483184557268,1.50561867580173,2.88748071068046,0.382067028739756,0.656804715599566,0.393553906568396,0.393364276848904,0,0.464448369948228,0,0,0,0.774672005803016,1.13735385989937,2.64240395401362,0.553995408531877,0.401088894940283,0.217010870715852,0.223915474239924,0.32389366601898,0.257575567634187,0,0,0,0,0.822335776043652,0,0,0,0,0.344745680736619,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0.290209238628584,1.13477044938228,0.622822248995575,0,0,0,0,0,0.316462387440884,0,0,0.209658645508376,0.22465726229299,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0,1.17447437874188,1.14681968437569,0,0.560508562981536,1.31692042387539,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0.328875809207352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0.12786256184353,0.361439152384566,0,0.434539556882471,0,0,0.850813354476611,0.221729397462564,0.87834785693126,0.654895377488563,0,0,0,0,0,0.715471872916026,0,0,0.198762407366705,0,0.694281003215189,0,0,0,0.417989933073621,1.29208379584664,0.35576626268671,0.66944122552934,0,1.52054421143703,1.22031028774085,0.367663080345869,0.81014194788176,0.892997282840798,0.673588117878509,0.225222960966644,1.53316637465883,1.89853131913626,2.01521918323448,0,0,0.436094052142534,0,0.25326102332916,0,0,0.354668382198357,0,0,0.74000264525148,0.622422070799533,0.269421344139376,0.163461903113459,0.302714855289863,0.576175924479999,0.70296429550139,0.312160076830321,0,0.149448680551801,0.23486899728753,0,0.140450806702248,0,0.122834317311768,0.206651562351531,0,0.247266929278557,0,0,0,0,0.277064115484183,0,0.919463387397059,0.150238058906597,0.453728732640084,0.179389635688862,0.213557388818567,0.211931901159562,0,0,0,0.37223371266318,0,0,0,0.368199594569197,0.484938170456436,0,0.201504196455281,0.169560592310488,0,0,0,2.5614478287215,2.25300606146525,1.51052125730374,1.55491582523056,2.01856680700503,0.72995471815166,0,1.28648187638577,0,0.464367928031979,0,0.473227200159376,0.674338760312407,0.723033089650446,0.772057809126758,0.217879444092406,0.71181185733329,0.404493924480493,0.784885860501384,0.38474715694639,2.21446636387394,0,0,0,0,0.982827216677626,0,0,0.737930631258681,0.857839051492628,0,0,0,0.0925884451585296,0.977424915930974,0,0,2.78232971940184,0,0.433099343283221,1.38895653772983,0.761016608938393,0,1.71697232418975,0.246217006087397,0,0.148631162288728,0,0,0.141775097242386,0,0,0,0,0.528290604079356,0.207328115540772,0.288239906833923,0.50496973370552,0.507983154337352,1.14596527667483,3.51652341630141,0,1.02827492703324,0.600686115687835,1.71495859578347,0.336393253036082,0,0.1466765716419,0.517086863031111,0,0,0,0,0.771622122786426,0,0.266422179016099,0.428933980974443,0.542621605391443,0,0.65147236858747,0.355391948742546,0,0.904318131178758,0.871533458600294,0,0,0.502257091432126,0,0,0,0,0.434343920002738,0.61642896765115,0.179060963239896,0.224170287987055,0,0.215627574859517,0,2.03275699377971,0,0.773288812777695,1.50764638800914,1.27587750330633,0,0,0,0.12269149171914,0,0.271265023699736,0.415941723061614,0.535286966391485,0,0.117141414992713,0,2.27407504055985,0,0,0.184369168541703,0.60818530127658,0.783204629850962,1.02943027143257,0.413536052245775,0.215714200818617,0,0,0,0,0,0,0.280660094433074,0.256278298511402,0,0.160853921143607,0,0.154209693802656,0.177561725313127,0.0821271560138091,0,0,2.1754700926492,0,0.184161977871793,0,0.182091168006717,0.262248829918848,0.902399225814824,0,1.56869953835371,0,0.316654886678627,0,0.680374821106063,0.647747748306418,3.08454505380579,0.270946437543853,1.50506932156456,0,0,0.447749509444357,0,0.261435451024901,2.56450125116389,2.95213181129735,1.62689197332152,0.618246069886334,1.28197250745681,0.907604499126468,0,0,0,0.96670718292122,0,0.307007349452259,0.827019434907183,0.107420244868274,0,0.255679882248303,1.78064071293475,0,0,0,0.10115778085555,0,0,0,0.616067160352178,0,0,0,0.143124886741991,0,0.316379424718726,0.190630193923825,0.511795582622668,0,0,0,0,0,0.235624804691373,0.202182481573316,0,0.421258456238981,0.48763373908959,0.243713489631284,0,0.409499734223957,0.141405431953713,0,0,0,0,0,0.655894752046633,0.202910376962704,0.30982349809975,0,0.143411352204052,0.196498082026242,0.35667105148125,0.354761064070598,0,0,1.51789269506286,1.04980416073495,0.0962221127255121,0,0,0.753150406214233,0,0,0,0,0,0,0,0,0,0,0,0.79312517629427,3.84566656058903,1.92495971052672,0,2.04383492638291,0.28853842595289,1.63626239701352,0.318852545457645,0.59873811429845,0,0.846694330895531,0.649243880549111,0.561594356226918,0,0.313359791546046,2.50634477090067,0.50787533340481,0.1605880751037,0,0,0,0.307240764308458,0,1.00109485027145,0.390776190804081,0.556812347790485,1.23087398947712,0.540911356951966,0.66614393599564,0,0,0.293016358543788,1.21360521749513,0.334330152832435,0,0,0.296964680832639,0,0,0.14066941641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| ||
|short_description=p4@REPIN1,p4@ZNF775 | |||
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Latest revision as of 02:56, 17 September 2015
Short description: | p4@REPIN1, p4@ZNF775 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_REPIN1_5end, CAGE_peak_4_at_ZNF775_5end |
Coexpression cluster: | NA |
Association with transcript: | -126bp_to_ENST00000397281, ENST00000444957, ENST00000478789, NM_001099695, NM_001099696, NM_013400, uc003whc.2, uc010lpq.1, uc010lpr.1_5end |
EntrezGene: | 29803,285971 |
HGNC: | 28501&submit=Submit 17922, 28501 |
UniProt: | Q9BWE0C9JVG2C9J3L7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
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neural cell | 2.09e-12 | 25 |
pigment cell | 3.03e-12 | 14 |
neurectodermal cell | 1.92e-11 | 59 |
embryonic stem cell | 2.24e-10 | 5 |
migratory neural crest cell | 1.43e-09 | 41 |
neuronal stem cell | 1.48e-08 | 8 |
melanocyte | 1.76e-08 | 10 |
melanoblast | 1.76e-08 | 10 |
ectodermal cell | 2.49e-08 | 72 |
neuron | 3.43e-08 | 6 |
neuroblast | 3.43e-08 | 6 |
electrically signaling cell | 3.43e-08 | 6 |
retinal pigment epithelial cell | 3.60e-07 | 3 |
astrocyte of the cerebral cortex | 4.23e-07 | 3 |
oligodendrocyte | 4.85e-07 | 7 |
macroglial cell | 4.85e-07 | 7 |
astrocyte | 4.85e-07 | 7 |
oligodendrocyte precursor cell | 4.85e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
pigmented layer of retina | 3.60e-07 | 3 |
presumptive retinal pigmented epithelium | 3.60e-07 | 3 |