FFCP PHASE1:Hg19::chr7:23286379..23286401,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr7:23286379..23286401,+
|short_description=p1@GPNMB
|description=CAGE_peak_1_at_GPNMB_5end
|association_with_transcript=0bp_to_ENST00000453162,ENST00000459927...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10457 | |EntrezGene=10457 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4462 | |HGNC=4462 | ||
|TSSclassifier=strong | |||
|UniProt=F5GY20,F6SKP1 | |UniProt=F5GY20,F6SKP1 | ||
|association_with_transcript=0bp_to_ENST00000453162,ENST00000459927,ENST00000474157,ENST00000487890,ENST00000539136_5end | |||
|cluster_id=chr7:23286379..23286401,+ | |||
|coexpression_cluster_id=C67 | |||
|description=CAGE_peak_1_at_GPNMB_5end | |||
|id=chr7:23286379..23286401,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.07e-12!180;CL:0000057!5.88e-09!75 | |||
|ontology_enrichment_celltype_v019=CL:0000134;3.33e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,6.03e-09,76 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000062!3.35e-18!511;UBERON:0000468!8.87e-17!659;UBERON:0000467!4.87e-14!625;UBERON:0000480!9.84e-14!626;UBERON:0003102!1.18e-12!95;UBERON:0002204!1.08e-10!167;UBERON:0002050!6.05e-09!605;UBERON:0005423!6.05e-09!605;UBERON:0000923!7.42e-09!604;UBERON:0005291!7.42e-09!604;UBERON:0006598!7.42e-09!604;UBERON:0002532!7.42e-09!604;UBERON:0000922!1.40e-08!612;UBERON:0002199!1.32e-07!45;UBERON:0002416!1.32e-07!45;UBERON:0000165!2.64e-07!28;UBERON:0000930!2.64e-07!28;UBERON:0004765!6.20e-07!101;UBERON:0001434!6.20e-07!101;UBERON:0002097!8.15e-07!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0000165;2.03e-07;28 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,4.32e-13,99;UBERON:0002204,7.60e-12,167;UBERON:0002050,1.53e-09,564;UBERON:0000923,2.99e-09,560;UBERON:0010316,2.99e-09,560;UBERON:0005291,2.99e-09,560;UBERON:0006598,2.99e-09,560;UBERON:0010317,2.99e-09,560;UBERON:0002532,2.99e-09,560;UBERON:0000926,6.12e-09,315;UBERON:0004120,6.12e-09,315;UBERON:0006603,6.12e-09,315;UBERON:0005423,2.29e-08,581;UBERON:0002199,2.92e-08,46;UBERON:0002416,2.92e-08,46;UBERON:0004923,3.45e-08,66;UBERON:0000165,1.04e-07,29;UBERON:0000930,1.04e-07,29;UBERON:0001434,1.16e-07,100;UBERON:0002097,1.88e-07,41;UBERON:0000922,5.03e-07,592 | |||
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| ||
|short_description=p1@GPNMB | |||
}} | }} |
Latest revision as of 20:12, 17 September 2015
Short description: | p1@GPNMB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GPNMB_5end |
Coexpression cluster: | C67_CD14_Monocytederived_Macrophage_dura_Dendritic_spleen_lung |
Association with transcript: | 0bp_to_ENST00000453162, ENST00000459927, ENST00000474157, ENST00000487890, ENST00000539136_5end |
EntrezGene: | GPNMB |
HGNC: | 4462 |
UniProt: | F5GY20F6SKP1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 6.03e-09 | 76 |
Ontology term | p-value | n |
---|---|---|
surface structure | 4.32e-13 | 99 |
musculoskeletal system | 7.60e-12 | 167 |
embryonic structure | 1.53e-09 | 564 |
germ layer | 2.99e-09 | 560 |
germ layer / neural crest | 2.99e-09 | 560 |
embryonic tissue | 2.99e-09 | 560 |
presumptive structure | 2.99e-09 | 560 |
germ layer / neural crest derived structure | 2.99e-09 | 560 |
epiblast (generic) | 2.99e-09 | 560 |
mesoderm | 6.12e-09 | 315 |
mesoderm-derived structure | 6.12e-09 | 315 |
presumptive mesoderm | 6.12e-09 | 315 |
developing anatomical structure | 2.29e-08 | 581 |
integument | 2.92e-08 | 46 |
integumental system | 2.92e-08 | 46 |
organ component layer | 3.45e-08 | 66 |
mouth | 1.04e-07 | 29 |
stomodeum | 1.04e-07 | 29 |
skeletal system | 1.16e-07 | 100 |
skin of body | 1.88e-07 | 41 |
embryo | 5.03e-07 | 592 |