FFCP PHASE1:Hg19::chr12:49582273..49582301,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7846 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20766 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=172bp_to_uc009zlf.2_5end | |||
|cluster_id=chr12:49582273..49582301,- | |||
|description=CAGE_peak_3_at_TUBA1A_5end | |||
|id=chr12:49582273..49582301,- | |||
|ontology_enrichment_celltype=CL:0000055!9.76e-22!180;CL:0000057!9.91e-13!75;CL:0002620!4.04e-09!23;CL:0000393!1.09e-08!60;CL:0000211!1.09e-08!60;CL:0000680!1.80e-08!57;CL:0000056!1.80e-08!57;CL:0000355!1.80e-08!57;CL:0000183!3.61e-08!59;CL:0000187!8.12e-08!54 | |||
|ontology_enrichment_celltype_v019=CL:0002620;9.67e-10;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.84e-13,76;CL:0002620,2.20e-09,23;CL:0000680,1.61e-08,58;CL:0000056,1.61e-08,58;CL:0000355,1.61e-08,58;CL:0000393,2.32e-08,61;CL:0000211,2.32e-08,61;CL:0000187,8.21e-08,55;CL:0000048,6.97e-07,427 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!2.31e-10!83;UBERON:0002329!2.31e-10!83;UBERON:0003077!2.31e-10!83;UBERON:0003059!2.31e-10!83;UBERON:0007282!2.31e-10!83;UBERON:0009618!2.31e-10!83;UBERON:0007285!2.31e-10!83;UBERON:0004290!5.27e-10!70;UBERON:0000475!5.91e-09!365;UBERON:0000486!9.52e-09!82;UBERON:0001017!1.98e-08!82;UBERON:0002385!2.20e-08!63;UBERON:0001015!2.20e-08!63;UBERON:0000383!2.20e-08!63;UBERON:0001134!2.63e-08!61;UBERON:0002036!2.63e-08!61;UBERON:0003082!2.63e-08!61;UBERON:0005743!7.33e-08!86;UBERON:0000468!7.44e-08!659;UBERON:0002199!1.01e-07!45;UBERON:0002416!1.01e-07!45;UBERON:0001869!1.32e-07!32;UBERON:0001893!3.04e-07!34;UBERON:0000073!3.27e-07!94;UBERON:0001016!3.27e-07!94;UBERON:0002346!4.51e-07!90;UBERON:0004872!4.53e-07!84;UBERON:0003075!5.11e-07!86;UBERON:0007284!5.11e-07!86;UBERON:0001950!5.97e-07!20;UBERON:0002791!7.11e-07!33;UBERON:0002619!9.69e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;3.91e-08;20!UBERON:0002619;7.02e-08;22!UBERON:0001869;7.11e-08;32!UBERON:0000956;1.36e-07;25!UBERON:0000203;1.36e-07;25!UBERON:0001893;2.64e-07;34!UBERON:0002791;4.77e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,2.64e-10,73;UBERON:0003077,3.14e-10,72;UBERON:0007285,3.14e-10,72;UBERON:0002329,5.08e-10,71;UBERON:0003059,5.08e-10,71;UBERON:0007282,5.08e-10,71;UBERON:0004290,5.08e-10,71;UBERON:0009618,5.08e-10,71;UBERON:0007503,1.11e-09,78;UBERON:0001134,1.43e-08,62;UBERON:0002036,1.43e-08,62;UBERON:0003082,1.43e-08,62;UBERON:0010314,1.53e-08,132;UBERON:0002199,1.90e-08,46;UBERON:0002416,1.90e-08,46;UBERON:0002385,2.07e-08,64;UBERON:0001015,2.07e-08,64;UBERON:0000383,2.07e-08,64;UBERON:0000486,2.31e-08,83;UBERON:0001869,4.73e-08,32;UBERON:0001950,1.42e-07,20;UBERON:0001893,1.52e-07,34;UBERON:0002619,2.43e-07,22;UBERON:0001017,3.16e-07,81;UBERON:0000956,3.25e-07,25;UBERON:0000203,3.25e-07,25;UBERON:0002791,4.50e-07,32;UBERON:0001637,6.23e-07,42;UBERON:0003509,6.23e-07,42;UBERON:0004572,6.23e-07,42;UBERON:0000479,6.91e-07,773;UBERON:0003075,8.26e-07,82;UBERON:0007284,8.26e-07,82;UBERON:0002346,8.29e-07,86 | |||
|phase1_expression=5.99538651592837,2.5692062866918,3.24195129420734,4.00293193412522,0.446961094427288,2.61701557230111,5.06599756336621,12.6343974685366,1.82829939739887,4.42321085702716,0.697801167972428,1.52908960491121,3.69273769519835,1.60896258848061,0.994192127183747,0.672325146451775,0.602694528023977,2.19093027116212,1.95173119516203,1.60057375499824,2.24400760368678,1.88072832886853,0.286235987131057,2.73748850145768,2.63639543149086,0.152826811495903,0.246301768349837,0.0787107813136792,0.393364276848904,0,0.619264493264304,0,0.30120591877825,0.369754010166788,0.232401601740905,0,0.880801318004542,0,0,0.217010870715852,1.34349284543955,3.2389366601898,0.515151135268373,0.436194716338694,1.51150377475524,1.21292030593908,1.39457422143411,1.23350366406548,2.16794459626573,3.45230870786581,2.0492856522328,3.07426898855161,1.72372840368309,0,0,0.376484679085209,0.818718450173537,1.12361742222542,0.612167784741805,0.641858054152187,0,0.329851300186716,2.59302754908121,2.55734850319616,0.580418477257168,1.13477044938228,0.622822248995575,2.26123798731069,3.65038042894141,3.04064382587163,0,1.10483290796269,0.949387162322653,1.26753171787165,0.850417199860174,1.04829322754188,0.673971786878971,0.750884464207532,0.32145117339416,1.42506371870624,0.79566670879636,0.91332076882317,0,0,0,0.426730222566507,0.800791974072025,0.574752439954483,1.32208974556972,0,3.41527781465669,0.587237189370939,1.52909291250092,2.64342657158052,0.560508562981536,2.37045676297569,0,0,0.822405995998037,0,0,0.946895611469467,0,0.334231370655521,0,0.221533894583621,0.270803863765016,0,0.130059347559878,0.493313713811028,0.276350017785848,0.579606171470105,0.444859689486181,0.267540828089713,1.04535523804977,0,0,0.68725489096526,0.759059076058509,0,0,0.950452044448374,0.150575119077773,0.127986611154418,0,0.236777252044017,0,0.403213486449465,0.534880391567015,0.289648807765598,0,4.02420515822182,3.19656404608826,4.3372698286148,2.00535164254356,0.724232594804119,2.3858578411533,0.973269740605272,3.21418378357831,2.88248216701333,2.0202000709419,1.70272798147026,0.364295288292542,0.370784442784429,1.29818957461873,2.26368658489047,2.26028532882071,0,0,0.371457501329565,1.78886166630035,0,1.04142150482278,1.13061588384802,1.25849830862972,3.02629846134074,0.835979866147242,0.258416759169329,1.42306505074684,0.33472061276467,1.61131726843659,0.760272105718513,1.70843440283719,1.47065232138347,0.81014194788176,1.07159673940896,0.22452937262617,0.337834441449967,0,0.949265659568129,1.09921046358244,0,3.87780264148325,0.436094052142534,1.98788780678127,3.41902381494365,1.45650098894541,3.15520282823695,5.67469411517371,3.36406560085384,2.1349799145941,2.96001058100592,1.55605517699883,0.67355336034844,3.59616186849609,0.908144565869588,2.30470369792,0.468642863667593,3.43376084513353,5.13424639390004,6.72519062483105,0.939475989150119,2.10434827678571,2.52811452064047,1.02077085627447,1.10550885580591,0.206651562351531,1.18800285728205,2.71993622206413,5.46096817162816,0.718618141816238,1.34668891163253,2.25213335769535,2.21651292387346,7.90159717585508,6.43624371177941,1.80285670687916,4.42385514324082,4.30535125653269,4.05759038755278,7.2056846394251,5.40163972951924,6.38925681278321,2.31876486041066,4.28068769562657,3.71307930930786,4.67697624773753,5.3011092591264,3.49789614840738,5.65761198865842,4.61512470271599,7.7579115635283,7.29110546935097,0.773043412653187,0.545492241181669,0.286804595389004,0.731842236777572,0.530119073285941,1.16193942869518,1.96956004529204,3.28017106138317,0.36497735907583,3.12899064659632,0.643240938192885,4.14404764057442,0.928735856063958,5.77503585335668,0.118306800039844,0.674338760312407,0.241011029883482,0.220587945464788,0.217879444092406,0,0.134831308160164,0.196221465125346,0,0.738155454624648,7.01208869017229,1.6462960453256,5.88034845542168,0,0,0.590789906681404,0.441463099414651,0.614942192715568,2.05881372358231,1.31700342490351,0,0.603173834469785,0.740707561268237,0,3.11980435583874,1.44331342025273,2.20267769452646,2.81780866165972,0.288732895522148,1.38895653772983,0.380508304469197,3.1608175918371,0,2.95460407304877,12.1682217872404,6.98566462757023,0,0.335964256397719,1.13420077793909,1.70161193135412,1.16253575405585,0.766765358330422,2.95597942737566,5.72314821085969,5.1832028885193,4.90007841617669,5.17593977048158,1.96843472305724,4.58386110669933,2.34434894420094,0,3.29047976650635,1.50171528921959,0,3.81245686774226,1.30788020649984,5.4270331507503,1.68053230485111,0,4.22651376278,3.72313363218819,1.04007436911366,7.20180647933998,4.25547396069835,6.66055447540248,0.57191197463259,0.542621605391443,0.823240336780769,5.21177894869976,0.710783897485092,5.543663110534,0.602878754119172,1.74306691720059,0.799783929456456,6.08118903205952,4.01805673145701,14.7583757638122,4.0736225433569,1.14861935834114,1.42636905040718,2.89562613335158,3.28762116080613,1.96967059563885,0.336255431980582,0.197030760201927,0.646882724578552,0.256686072559497,3.55732473911449,2.60279707715243,10.05275456611,6.03058555203656,14.0346525363696,0.749007023947182,2.99161459204025,0.828831026872071,2.69921281782108,1.00034104211935,2.44138521329762,2.70362119990049,3.7470087647404,1.57702415033935,2.6942525448324,3.00946099727719,2.27407504055985,2.0694614258501,9.96338397803155,6.26855173041791,2.17209036170207,1.56640925970192,2.40200396667599,0,0,0,1.21251028578504,0,0.907170879989041,2.23297027036899,2.60885354589706,2.52594084989766,1.15325234330131,2.55853624533352,2.41280881715411,1.48418066444991,5.85996836450091,4.43904313282818,5.33826514089759,4.15403543346897,5.22946703069817,0,0.802025881213139,0.184161977871793,2.18147451512753,2.1850940160806,1.04899531967539,0,1.77135275340154,3.13739907670742,5.84556898613043,1.37217117560738,1.13733384070897,0.340187410553031,1.29549549661284,1.54227252690289,3.79325012561394,2.50844886927427,0.764628819135115,0,2.0148727924996,0.219259876645935,0,0.256450125116389,0.984043937099117,0.325378394664303,0.412164046590889,0.915694648183434,0.247528499761764,0,2.60024098414608,1.6068392984416,0.870036464629098,4.1593126620954,3.37708084397485,2.48105830472155,1.71872391789238,2.32026710262766,4.26133137080504,2.31483292681517,0.826424576804891,1.34533047155574,0.510450849978337,0.2023155617111,3.71876439437829,2.51849877464512,2.7881490806424,4.62050370264133,5.85536633348724,4.34966496037536,1.11194531462352,1.28812398067792,0.744316738719335,3.48017367190598,0.762520775695299,7.93283153065135,2.99557291623744,3.18203247925937,5.49464048139461,1.2591072030832,0.274537029736055,0.942499218765491,3.63928466831969,0,1.26377536871694,1.95053495635836,2.19342140668156,3.16950440270266,1.22849920267187,0.989838023675989,5.65040583101214,7.16774946609961,3.3171948762061,2.63070531152258,2.31510213706675,1.31178950409327,3.85529716229138,4.3375289733965,2.53526042279017,2.15117028306077,2.06322986127554,2.49669736036875,6.38569915327076,0.211107635297664,0.658589785919804,4.55367808518858,2.44954304171488,0.48111056362756,2.68120910214315,0,0.282431402330337,3.44404298136984,1.68471475667626,2.66058092122005,1.60806380144872,0,0,0.569647187174163,0.238231775457789,0,0,0.540031437238115,0,0.320472213382419,0,0,1.30062222588003,0.865615277858669,0.924843963529383,0.159426272728822,0.59873811429845,1.91505370132367,1.2700414963433,0.973865820823666,1.96558024679421,1.14117339516596,1.09675927041116,0,0.846458889008016,1.1241165257259,0.403599414382095,0,3.43505344755765,0,0.223676107892416,0.166849141711909,2.14926904942244,0,0,0.270455678475983,0.33307196799782,1.4098700508785,0,4.9812780952444,0.849523652246594,0.222886768554957,0.852408440419239,0.23874448473769,0.593929361665277,0.307160702099232,8.94732882989668,1.96937182974718,0.222617410045812,0,0.844501632511974,2.59022384726391,1.38141957765574,0.251932747854276,1.84083628503879,0.738508832766417,14.618860620105,0.179736702294654,0,0.511572370226872,2.46608514092334,0,1.11136990144637,2.90799823828566,4.08179631912146,3.99227596002388,0.260427761085233,0,2.17499872630438,0,0,0.236387681767936,0.689486746482929,2.33283690706603,0.694499979733169,6.20018970069687,1.68835014075571,0,0.884634079449797,2.95547618953547,3.72955175161753,0,0,2.00070672109872,0.683652335082007,0,0.0897576444097721,0.217294743844016,0.638002319463839,2.10674464824283,0,0,0.31396051279005,0.332423363800313,0.902382642468723,1.76456280885966,1.51039428278258,0,0.953619473882272,1.47698645169619,0,0.141353071433941,0.216388639742091,0.995261931078505,1.14994833854341,0,0.593042257361244,0.617819694732514,0.522109747527277,1.81983059047828,2.40773294189637,2.81117334870407,0.547364367646998,0.391329237864179,1.21390189767046,0.394584402849391,1.20990716048664,3.0607276163049,3.6648216184523,0.60129367765797,0.414752765588989,0,0.661983911750998,0.627865836814451,1.19472429772959,0,2.63481878724963,0,0.0979923974143777,0.435296032902013,1.57254001417827,1.20390222730132,0,0,0,1.84279131327997,0.706049013532002,3.84167259326905,0.137041924646751,0.19871461170299,3.67202616544096,0.391102765469606,0,1.49417096317547,1.19885765749278,0.144090417154106,0.114536596165916,0.857974989309823,0,0.621262677827163,0.235694034616795,2.31037150325144,3.24268823568233,1.22397861163586,0.288950589901519,1.20084057741958,0.821432273351958,0,2.14882720709979,3.41753560563109,3.0721064139948,1.3749625440701,1.43574604915363,1.19807400299395,4.72148652950228,1.56220020209311,2.75452237195578,4.68389848605125,0,0.0787831823072236,0,0,0.0984274815147488,0,1.59045937961861,1.22583065500418,0.643012593860077,0.962776056180637,1.24632101408756,1.799791132412,0.77380195455795,3.88797162611358,0,2.91581117007033,2.15063811353492,0.844802692155252,0.179287339332845,0.383830394638891,1.42939065274673,5.29673576292345,1.017074150619,2.17199840701485,0.864221491201268,4.57222304153173,2.39460383124975,0.738832686744051,1.36310417428337,0.906496732161005,0.293104467356165,0,0.775697738169303,1.58679122091228,0,0,2.66968531419237,1.57204305099666,2.48543433208317,0.992332043623902,0,0,0,1.63205341010842,1.2534494701135,1.53172788381731,1.96723578425883,0.157054096250234,4.43034089983493,4.39294553647067,2.253436752717,6.30750115259078,0.887432412294818,2.11127770000704,0.415045904808692,0.37494122388632,0.303298235083296,1.14186133417987,0.941063278792687,2.81000943484129,0.869526171664951,2.83584125485061,1.40227985908335,4.99325275352352,1.13641803165053,3.0188148210309,0.889811221596536,0.915360273587694,3.4783112465545,1.86524640699337,2.36568239983414,2.23015474029183,0.449803112163605,1.86315548251511,4.97647449409027,3.19010057469594,0.521745061811734,0.751288044986092,1.14241563650639,3.25496586563729,2.00033525122815,0.751873899297419,2.32016879939247,2.78667122089031,4.80033317595784,1.37358282073117,2.02049693259551,0,0,0,0.260994291965212,2.26705925512272,1.62065732026684,0.489473409012935,0.895444205407437,0.308801447160972,1.09642024789354,1.59020231351293,0.38582807654183,1.35153952522458,1.79369063011563,0.345430341731199,0.911579868532147,1.38258436151731,1.7537427795545,1.99297260470045,0.817826971279221,0.982829546539238,1.2288645437686,0,0.999936979274649,0.320075189082423,0,0.567515953566836,1.10463570151104,0.139879507719444,0,1.79052119825112,2.69562028491704,0.314531883711793,1.41972529649618,0.509197589862076,4.88922316233871,3.09839410647505,0.558644917973244,1.90802610392051,3.46991678005515,0.80057074828547,1.76337971845342,1.531227386766,3.14723202972652,9.91876034279095,1.11743701340006,3.28186182785208,3.27693205088234,6.63909623656492,2.42213468447777,0,0,0,0,0.693153996902029,1.52552838186867,0.690359926060101,0.397832444232549,5.03909199940024,0.20170506870352,0.781514011233092,0.523813388962845,0.327543835020193,0.739280431085226,3.8496423232485,3.12431239445539,1.03343398250592,3.10737469950143,2.18789923607288,0,2.97726707033577,0.351742488719241,0,1.60710550763486,0,1.21393120847326,0.455324382702595,0.79832133146375,1.03710588800201,0.685952037749674,2.24300118823545,4.07791196089664,0.354581522651905,0.111231401892069,1.0989032999072,2.67096502857203,0,1.82631744101899,1.72742072974897,0,2.50167904618297,0.632054446930906,0.581207126840626,0,1.60342272946051,1.45051314914126,1.3657478167516,0,1.29068207646083,1.18332000730565,1.10777426186905,0,0.4582137370881,2.17144469965024,2.8666168169323,0.447421727191169,0,0,0,1.84793052341245,2.3196288626764,3.39997695141398,0.233939463462106,1.59160620129095,1.30812099855325,0.22589216407792,0.219881033490858,0.603851374266694,0.926089897295336,1.74847648403166,0.940634592723046,2.69663153929296,0.235676547101626,1.37415926980462,0.594092800654172,2.9585900930838,2.54890672031725,1.97366227757693,1.93373663920732,0.599646935549574,0,0.705789743431384,0.722172300202514,0,1.37618785021362,0.573358332605805,0.631086248772738,5.91525964660958,3.9271562130634,0,2.60396512716726,0.924351257262837,1.29787968637137,0.630832124175395,0.218531143927391,0.760191006068622,0.305966489225945,0,0.18378979906969,0,2.34913964476542,1.33982065078089,0.829169439458779,1.24119595034274,0.852935927603924,0.714193294391221,1.16260037704811,0.620747142958579,0.112131862580613,1.20929600728513,0.404234377916439,0.870866991587845,2.39563310759697,0.740872583160463,1.5061663132462,1.99596213927608,1.05824249194267,1.70763753404345,1.9307228228694,0.269475606319761,2.34640942403454,1.833621662743,2.44137706989443,1.33151354837103,1.40891655513718,1.9234109538194 | |||
|short_description=p3@TUBA1A | |||
}} |
Latest revision as of 15:53, 18 September 2015
Short description: | p3@TUBA1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TUBA1A_5end |
Coexpression cluster: | NA |
Association with transcript: | 172bp_to_uc009zlf.2_5end |
EntrezGene: | TUBA1A |
HGNC: | 20766 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.84e-13 | 76 |
skin fibroblast | 2.20e-09 | 23 |
muscle precursor cell | 1.61e-08 | 58 |
myoblast | 1.61e-08 | 58 |
multi-potent skeletal muscle stem cell | 1.61e-08 | 58 |
electrically responsive cell | 2.32e-08 | 61 |
electrically active cell | 2.32e-08 | 61 |
muscle cell | 8.21e-08 | 55 |
multi fate stem cell | 6.97e-07 | 427 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 2.64e-10 | 73 |
paraxial mesoderm | 3.14e-10 | 72 |
presumptive paraxial mesoderm | 3.14e-10 | 72 |
somite | 5.08e-10 | 71 |
presomitic mesoderm | 5.08e-10 | 71 |
presumptive segmental plate | 5.08e-10 | 71 |
dermomyotome | 5.08e-10 | 71 |
trunk paraxial mesoderm | 5.08e-10 | 71 |
epithelial vesicle | 1.11e-09 | 78 |
skeletal muscle tissue | 1.43e-08 | 62 |
striated muscle tissue | 1.43e-08 | 62 |
myotome | 1.43e-08 | 62 |
structure with developmental contribution from neural crest | 1.53e-08 | 132 |
integument | 1.90e-08 | 46 |
integumental system | 1.90e-08 | 46 |
muscle tissue | 2.07e-08 | 64 |
musculature | 2.07e-08 | 64 |
musculature of body | 2.07e-08 | 64 |
multilaminar epithelium | 2.31e-08 | 83 |
cerebral hemisphere | 4.73e-08 | 32 |
neocortex | 1.42e-07 | 20 |
telencephalon | 1.52e-07 | 34 |
regional part of cerebral cortex | 2.43e-07 | 22 |
central nervous system | 3.16e-07 | 81 |
cerebral cortex | 3.25e-07 | 25 |
pallium | 3.25e-07 | 25 |
regional part of telencephalon | 4.50e-07 | 32 |
artery | 6.23e-07 | 42 |
arterial blood vessel | 6.23e-07 | 42 |
arterial system | 6.23e-07 | 42 |
tissue | 6.91e-07 | 773 |
neural plate | 8.26e-07 | 82 |
presumptive neural plate | 8.26e-07 | 82 |
neurectoderm | 8.29e-07 | 86 |