FFCP PHASE1:Hg19::chr13:41579157..41579173,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr13:41579157..41579173,- | |||
|coexpression_cluster_id=C28 | |||
|description=CAGE_peak_at_chr13:41579157..41579173,- | |||
|id=chr13:41579157..41579173,- | |||
|ontology_enrichment_celltype=CL:0000037!5.77e-25!172;CL:0000566!5.77e-25!172;CL:0000988!5.10e-23!182;CL:0002032!7.35e-22!165;CL:0000837!7.35e-22!165;CL:0000738!2.38e-13!140;CL:0000838!3.22e-12!52;CL:0002031!3.74e-12!124;CL:0000542!6.46e-12!53;CL:0000051!6.46e-12!53;CL:0000763!1.11e-10!112;CL:0000049!1.11e-10!112;CL:0002274!1.14e-10!5;CL:0000457!1.14e-10!5;CL:0002191!1.14e-10!5;CL:0000097!1.14e-10!5;CL:0000831!1.14e-10!5;CL:0002028!1.14e-10!5;CL:0000623!3.12e-10!3;CL:0000825!3.12e-10!3;CL:0002087!1.21e-08!119;CL:0000893!4.51e-08!2;CL:0002489!4.51e-08!2;CL:0000809!4.51e-08!2;CL:0000808!4.51e-08!2;CL:0000894!4.51e-08!2;CL:0000806!4.51e-08!2;CL:0000807!4.51e-08!2;CL:0000805!4.51e-08!2;CL:0002425!4.51e-08!2;CL:0000134!6.63e-08!358;CL:0002320!1.46e-07!365 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2531!8.75e-32!51;DOID:0060083!8.75e-32!51;DOID:1240!4.28e-26!39;DOID:8692!8.30e-21!31;DOID:0060058!1.04e-11!10;DOID:0050686!8.74e-09!137;DOID:74!3.40e-07!2 | |||
|ontology_enrichment_disease_v019=DOID:0060058;6.34e-08;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,6.13e-08,10 | |||
|ontology_enrichment_uberon=UBERON:0002370!8.54e-15!4;UBERON:0005058!8.54e-15!4;UBERON:0009113!8.54e-15!4;UBERON:0003295!8.54e-15!4;UBERON:0005562!8.54e-15!4;UBERON:0004177!3.17e-12!7;UBERON:0003351!7.50e-10!6;UBERON:0000974!1.80e-08!10;UBERON:0001042!1.91e-08!10;UBERON:0009145!1.91e-08!10;UBERON:0006562!1.22e-07!11;UBERON:0002384!4.30e-07!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;6.43e-131;2!UBERON:0005058;6.43e-131;2!UBERON:0009113;6.43e-131;2!UBERON:0004177;2.51e-53;5!UBERON:0005057;2.51e-53;5!UBERON:0000077;6.40e-11;27!UBERON:0002405;6.40e-11;27!UBERON:0002368;2.47e-07;33!UBERON:0002390;2.48e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,3.35e-66,4;UBERON:0005058,3.35e-66,4;UBERON:0009113,3.35e-66,4;UBERON:0003295,3.35e-66,4;UBERON:0005562,3.35e-66,4;UBERON:0003351,1.22e-44,6;UBERON:0004177,1.80e-38,7;UBERON:0005057,1.80e-38,7;UBERON:0000974,2.38e-27,10;UBERON:0003408,2.38e-27,10;UBERON:0001042,2.38e-27,10;UBERON:0009145,2.38e-27,10;UBERON:0006562,5.49e-25,11;UBERON:0009722,5.49e-25,11;UBERON:0007690,5.49e-25,11;UBERON:0008814,9.05e-16,18;UBERON:0001557,5.27e-15,19;UBERON:0004807,1.47e-10,28;UBERON:0000077,3.10e-10,29;UBERON:0002368,1.14e-08,35;UBERON:0000949,5.58e-07,45;UBERON:0000072,1.00e-06,47 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0,0.0787107813136792,0,0.383829398097213,0,0,0,0,0.619737604642413,0.284338464974843,0.293600439334847,0,0.200544447470142,0.217010870715852,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209658645508376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0,0.167186495390678,0,0,0,0.111410456885174,0,0,0,0,0.130059347559878,0,0.276350017785848,0.289803085735052,0,0,0,0.226618685395132,0.383220493601921,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.6487785964879,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0.088048434013226,0,0.144119953416961,0.37872730027914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.448340575974109,0.197030760201927,0.215627574859517,0.256686072559497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540031437238115,0,0,0,0,0,0.28853842595289,0.213425530045242,0,0,0.191505370132367,0,0,0.280797178113459,0.228234679033192,0.313359791546046,0,0,0.481764225311099,0.403599414382095,0.425846237690326,0,0.307240764308458,0.671028323677248,0.500547425135725,0,0.278406173895242,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511572370226872,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166211681900156,0.225595660617181,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.364909578431332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254019996197353,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.297046400327086,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.81074568032436,2.60713800042603,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |||
|short_description=p@chr13:41579157..41579173,- | |||
}} |
Latest revision as of 15:59, 24 July 2015
Short description: | p@chr13:41579157..41579173, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:41579157..41579173, - |
Coexpression cluster: | C28_thymus_acute_vein_Hodgkin_chronic_throat_Dendritic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
thymus | 3.35e-66 | 4 |
hemolymphoid system gland | 3.35e-66 | 4 |
thymic region | 3.35e-66 | 4 |
pharyngeal gland | 3.35e-66 | 4 |
thymus primordium | 3.35e-66 | 4 |
pharyngeal epithelium | 1.22e-44 | 6 |
hemopoietic organ | 1.80e-38 | 7 |
immune organ | 1.80e-38 | 7 |
neck | 2.38e-27 | 10 |
gland of gut | 2.38e-27 | 10 |
chordate pharynx | 2.38e-27 | 10 |
pharyngeal region of foregut | 2.38e-27 | 10 |
pharynx | 5.49e-25 | 11 |
entire pharyngeal arch endoderm | 5.49e-25 | 11 |
early pharyngeal endoderm | 5.49e-25 | 11 |
pharyngeal arch system | 9.05e-16 | 18 |
upper respiratory tract | 5.27e-15 | 19 |
respiratory system epithelium | 1.47e-10 | 28 |
mixed endoderm/mesoderm-derived structure | 3.10e-10 | 29 |
endocrine gland | 1.14e-08 | 35 |
endocrine system | 5.58e-07 | 45 |
segment of respiratory tract | 1.00e-06 | 47 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 6.13e-08 | 10 |