FFCP PHASE1:Hg19::chr17:37856253..37856296,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2064 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3430 | |||
|TSSclassifier=strong | |||
|UniProt=P04626 | |||
|association_with_transcript=0bp_to_ENST00000269571,ENST00000540147,NM_004448,uc002hsn.1,uc002hso.2,uc002hsp.2,uc010cwb.2,uc010wek.1_5end | |||
|cluster_id=chr17:37856253..37856296,+ | |||
|description=CAGE_peak_2_at_ERBB2_5end | |||
|id=chr17:37856253..37856296,+ | |||
|ontology_enrichment_celltype=CL:0000055!5.48e-13!180;CL:0000066!1.78e-12!254;CL:0002321!1.15e-11!248;CL:0000220!4.11e-11!246 | |||
|ontology_enrichment_celltype_v019=CL:0000349;1.02e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.40e-12,253;CL:0002321,2.48e-11,250;CL:0000349,9.14e-08,19;CL:0000057,5.89e-07,76 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000481!2.24e-17!347;UBERON:0000468!2.59e-17!659;UBERON:0000475!7.15e-17!365;UBERON:0002100!2.24e-14!216;UBERON:0003104!7.34e-14!238;UBERON:0009142!7.34e-14!238;UBERON:0004119!5.95e-13!169;UBERON:0000925!5.95e-13!169;UBERON:0006595!5.95e-13!169;UBERON:0000467!1.22e-11!625;UBERON:0000480!2.26e-11!626;UBERON:0000062!9.98e-11!511;UBERON:0000466!2.01e-10!126;UBERON:0009569!2.97e-10!113;UBERON:0005256!3.14e-10!143;UBERON:0003103!3.45e-10!69;UBERON:0000464!9.06e-10!104;UBERON:0000922!1.01e-09!612;UBERON:0001007!1.13e-09!155;UBERON:0001555!1.13e-09!155;UBERON:0007026!1.13e-09!155;UBERON:0001008!6.97e-09!45;UBERON:0005177!1.25e-08!107;UBERON:0006554!1.72e-08!44;UBERON:0003102!2.09e-08!95;UBERON:0005631!3.19e-08!14;UBERON:0000158!3.19e-08!14;UBERON:0004923!3.36e-08!57;UBERON:0002050!3.52e-08!605;UBERON:0005423!3.52e-08!605;UBERON:0000119!5.46e-08!312;UBERON:0000923!5.74e-08!604;UBERON:0005291!5.74e-08!604;UBERON:0006598!5.74e-08!604;UBERON:0002532!5.74e-08!604;UBERON:0000064!5.94e-08!219;UBERON:0000483!7.83e-08!309;UBERON:0001444!1.01e-07!48;UBERON:0001048!1.35e-07!168;UBERON:0000077!3.16e-07!130;UBERON:0002553!3.78e-07!70;UBERON:0003914!5.35e-07!118;UBERON:0003064!7.63e-07!37;UBERON:0000058!8.59e-07!26;UBERON:0002417!9.07e-07!61;UBERON:0000916!9.07e-07!61;UBERON:0005156!9.50e-07!59;UBERON:0000990!9.50e-07!59 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;1.21e-07;30!UBERON:0001008;1.21e-07;30 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.88e-13,160;UBERON:0000925,1.88e-13,160;UBERON:0006595,1.88e-13,160;UBERON:0002100,2.15e-13,199;UBERON:0003104,8.87e-13,160;UBERON:0009142,8.87e-13,160;UBERON:0001008,9.68e-11,48;UBERON:0006554,2.50e-10,47;UBERON:0009569,3.78e-10,112;UBERON:0003103,4.84e-10,68;UBERON:0001007,6.93e-10,145;UBERON:0001555,6.93e-10,145;UBERON:0007026,6.93e-10,145;UBERON:0003102,1.14e-08,99;UBERON:0004923,1.95e-08,66;UBERON:0005177,1.99e-08,101;UBERON:0005631,2.89e-08,14;UBERON:0000158,2.89e-08,14;UBERON:0000119,6.79e-08,309;UBERON:0000922,7.22e-08,592;UBERON:0000483,9.72e-08,306;UBERON:0001048,1.10e-07,160;UBERON:0001444,1.78e-07,49;UBERON:0005256,2.90e-07,122;UBERON:0000033,5.20e-07,56;UBERON:0003914,6.74e-07,117;UBERON:0005156,8.47e-07,59;UBERON:0000990,8.47e-07,59 | |||
|phase1_expression=11.6274162733156,7.70761886007539,11.2763523276777,9.00659685178174,6.70441641640932,7.85104671690332,2.53299878168311,4.42203911398782,7.83556884599516,12.532430761577,13.9560233594486,18.1306338868043,28.486833648673,13.242999766725,10.9361133990212,3.36162573225888,6.02694528023977,6.57279081348636,4.87932798790507,14.528284853061,14.0760476958535,17.2400096812948,9.44578757532487,8.89683762973747,10.2944964467738,0,0,0,0,0,0.309632246632152,6.43594857135249,6.92773613189975,7.02532619316897,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.31420598941885,11.4019146149618,10.7404551948565,5.06014813338393,12.5334477658972,8.69079113764942,3.9764297352555,13.6257763684738,9.54801653357085,6.20842312895179,9.39832206916449,10.3473469643193,21.49342200926,12.6066710546706,0.649094787309367,0.348259474598534,0.930705723632056,0,0,0,4.96906018416763,4.30117297553062,7.63709103536707,3.95715559346807,6.71199097935849,6.05259692268148,5.64286409649389,0.258416759169329,0.71153252537342,0.33472061276467,2.81980521976403,0,1.22031028774085,1.83831540172934,8.1014194788176,5.89378206674926,6.28682243353275,4.72968218029953,3.06633274931766,5.69559395740877,6.04565754970344,0,0,17.8798561378439,10.4364109856017,7.34456967654563,7.67973248716669,26.9626423503885,10.2853830837524,8.97084160227691,10.6748995729705,9.37336683985208,9.33633106199299,7.54379763590253,5.23078089963068,10.1409476522104,7.49028701823999,7.26396438684769,6.86752169026705,3.4228309292667,5.08125513876124,3.52303495931295,3.88495066483516,2.24721290723598,8.57447519270552,5.28187564440602,6.19954687054593,8.31602000097437,10.3852110296994,17.2930658768225,20.1213079708547,5.05008341862199,7.88246675193374,5.54128230968366,7.90159717585508,11.6465362403627,12.3195208303409,6.69249880644124,13.9923915837312,10.2507546632912,8.05341224406335,21.9066500141614,8.45030739755199,11.0785432219621,8.74749224758472,22.6160285203297,7.69752340773469,11.8643873894734,11.0459878370759,13.9015608864178,28.0457578088125,8.36242415289414,8.81715080014536,9.46978180500154,10.3643525824517,6.30970109855808,12.3193443190891,18.024048491722,12.548945829908,7.87824018116815,14.1299676490352,9.48941133597158,4.69348596989448,6.43240938192885,13.8134921352481,21.360924689471,11.5500717067134,4.49565840151407,6.57480291304597,3.85617647813571,3.74999507290139,3.4860711054785,3.79632990577755,3.50561401216427,3.33576490713088,3.07797725557112,0,7.01208869017229,18.1092564985816,24.9914809355421,2.53510069643662,2.94848165003288,3.54473944008842,0,8.85516757510418,7.3774158428366,9.98727597218493,7.86812272803337,4.92591964816991,13.7956783286209,6.84197441151682,11.4392826380754,4.3299402607582,15.7665350766104,12.7975476717046,1.01056513432752,0.462985512576611,1.14152491340759,8.69224837755203,10.3018339451385,0,0.234004265139238,0,8.43604505880993,7.39121364074982,5.81277898693785,4.29880908973672,4.06887513919547,7.28427090413901,0,0,0.621984346622316,0.288239906833923,0.75745460055828,7.68324520935245,16.4255022990059,17.582617081507,6.84289784090821,8.22619941626588,6.30720421472227,11.1472308725925,9.4190110850103,5.66748089483264,7.40716686791595,6.72212921940444,50.0719024192635,8.45302752556,6.38251479803689,9.36066932202295,12.3459539645828,8.5109479213967,10.656887160644,8.00676764485626,18.9917561887005,12.3486050517115,2.93162565864362,12.7941101547316,4.75171123760058,7.23454504943007,6.10073421020206,11.7968129594827,0,0,0,6.70949595376431,11.4861935834114,5.70547620162874,4.92256442669769,8.42452922456572,8.59492623551499,0,0.197030760201927,0,0,11.9424473384558,10.4111883086097,0,3.18280904135263,1.91381625495949,0,0,0,16.3179683986456,11.0037514633129,7.05289061619313,11.4383973841944,7.13715955188647,9.46214490203608,13.2369798941766,11.736897889381,11.3703752027992,7.24311499047534,6.64225598535437,9.58719676416856,3.21469373531907,19.7759169037368,18.5297448857862,0,0,0,18.4907818582218,19.9722527412596,29.331858452979,11.4129591596637,12.4304198363331,9.82310330515758,9.35415789566617,11.7692667285342,10.7772127166217,8.90508398669946,4.1636617326717,6.39222211127257,5.00975651684236,4.15403543346897,4.18357362455853,6.76812917713084,10.0253235151642,6.26150724764095,6.8888668898764,6.3731908802351,9.57208229203796,20.3039825808335,9.3958711267386,30.5896409978974,13.1525302187935,9.39409497146594,3.4120015221269,1.19065593693561,5.39789790255348,12.3381802152231,22.2176078785959,23.5794193711781,10.9596797409366,12.4661401339309,16.342857094719,0,0,6.15480300279334,14.1046297650873,7.15832468261467,14.2196596073857,7.41712665028582,6.51825049372645,12.6338418359158,5.85054221432869,9.64103579064957,5.89691381581944,3.69716681075147,5.83313963959292,3.72158745708233,10.9568649765639,6.81578461396874,5.28405089979826,10.5948122419617,3.8015530533025,9.0329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| |||
|short_description=p2@ERBB2 | |||
}} |
Latest revision as of 22:34, 19 September 2015
Short description: | p2@ERBB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ERBB2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000269571, ENST00000540147, NM_004448, uc002hsn.1, uc002hso.2, uc002hsp.2, uc010cwb.2, uc010wek.1_5end |
EntrezGene: | ERBB2 |
HGNC: | 3430 |
UniProt: | P04626 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.40e-12 | 253 |
embryonic cell | 2.48e-11 | 250 |
extraembryonic cell | 9.14e-08 | 19 |
fibroblast | 5.89e-07 | 76 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.88e-13 | 160 |
endoderm | 1.88e-13 | 160 |
presumptive endoderm | 1.88e-13 | 160 |
trunk | 2.15e-13 | 199 |
mesenchyme | 8.87e-13 | 160 |
entire embryonic mesenchyme | 8.87e-13 | 160 |
renal system | 9.68e-11 | 48 |
urinary system structure | 2.50e-10 | 47 |
subdivision of trunk | 3.78e-10 | 112 |
compound organ | 4.84e-10 | 68 |
digestive system | 6.93e-10 | 145 |
digestive tract | 6.93e-10 | 145 |
primitive gut | 6.93e-10 | 145 |
surface structure | 1.14e-08 | 99 |
organ component layer | 1.95e-08 | 66 |
trunk region element | 1.99e-08 | 101 |
extraembryonic membrane | 2.89e-08 | 14 |
membranous layer | 2.89e-08 | 14 |
cell layer | 6.79e-08 | 309 |
embryo | 7.22e-08 | 592 |
epithelium | 9.72e-08 | 306 |
primordium | 1.10e-07 | 160 |
subdivision of head | 1.78e-07 | 49 |
trunk mesenchyme | 2.90e-07 | 122 |
head | 5.20e-07 | 56 |
epithelial tube | 6.74e-07 | 117 |
reproductive structure | 8.47e-07 | 59 |
reproductive system | 8.47e-07 | 59 |