FFCP PHASE1:Hg19::chr19:1254962..1254989,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=90007 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=16298 | |||
|TSSclassifier=strong | |||
|UniProt=Q504T8 | |||
|association_with_transcript=-456bp_to_BC015089_5end | |||
|cluster_id=chr19:1254962..1254989,+ | |||
|coexpression_cluster_id=C13 | |||
|description=CAGE_peak_8_at_MIDN_5end | |||
|id=chr19:1254962..1254989,+ | |||
|ontology_enrichment_celltype=CL:0002057!2.60e-14!42;CL:0000860!1.66e-13!45;CL:0000766!1.60e-11!76;CL:0000557!1.42e-08!71;CL:0000839!2.85e-08!70;CL:0002194!1.58e-07!63;CL:0000576!1.58e-07!63;CL:0000040!1.58e-07!63;CL:0000559!1.58e-07!63;CL:0002009!2.41e-07!65 | |||
|ontology_enrichment_celltype_v019=CL:0000860;7.62e-20;33!CL:0002057;7.62e-20;33!CL:0000473;2.22e-15;39!CL:0000234;2.22e-15;39!CL:0000576;5.57e-11;48!CL:0000766;2.85e-10;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.86e-21,42;CL:0002057,4.86e-21,42;CL:0000766,1.33e-19,72;CL:0000473,1.85e-19,48;CL:0000234,1.85e-19,48;CL:0000557,2.26e-15,67;CL:0000839,8.25e-15,66;CL:0002009,2.54e-13,61;CL:0002194,3.54e-13,59;CL:0000576,3.54e-13,59;CL:0000040,3.54e-13,59;CL:0000559,3.54e-13,59;CL:0000738,1.81e-11,136;CL:0000763,5.27e-10,108;CL:0000049,5.27e-10,108;CL:0002031,6.38e-09,120;CL:0002087,4.86e-08,115;CL:0000988,3.95e-07,177;CL:0000037,4.79e-07,168;CL:0002032,6.50e-07,161;CL:0000837,6.50e-07,161 | |||
|ontology_enrichment_development_v019=CL:0002057;5.61e-15;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!6.96e-07!102;UBERON:0003061!6.96e-07!102;UBERON:0002371!9.50e-07!80 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.20e-13,76;UBERON:0002390,6.45e-13,98;UBERON:0003061,6.45e-13,98;UBERON:0001474,1.03e-11,82;UBERON:0002193,5.08e-11,108;UBERON:0004765,5.89e-11,90;UBERON:0002405,4.53e-10,93;UBERON:0001434,3.66e-09,100;UBERON:0003081,7.41e-09,203;UBERON:0000926,4.27e-07,315;UBERON:0004120,4.27e-07,315;UBERON:0006603,4.27e-07,315 | |||
|phase1_expression=0.908391896352783,2.14100523890983,0.845726424575827,0,1.78784437770915,0,2.53299878168311,0.631719873426831,0.261185628199839,0.491467873003018,2.79120467188971,0,0.263766978228454,0.495065411840187,0.331397375727916,1.34465029290355,0,2.19093027116212,0.487932798790507,0.492484232307152,1.02000345622126,0,0,0.547497700291537,0.502170558379211,0.152826811495903,0.246301768349837,0.314843125254717,2.36018566109342,0.767658796194425,1.70297735647684,0,2.10844143144775,0,0.0774672005803016,0.710846162437108,0,1.66198622559563,4.41197784434312,1.73608696572681,0.671746422719773,0.32389366601898,0.257575567634187,6.54292074508041,4.1566353805769,2.18325655069035,3.71886459049095,1.6446715520873,3.40677007984614,6.04154023876516,4.61089271752381,1.18241114944293,1.37898272294647,0.645484683583826,1.35426486594342,6.58848188399116,1.63743690034707,1.12361742222542,4.89734227793444,1.92557416245656,1.91801137739712,4.94776950280074,5.98390972864896,4.68847225585964,4.06292934080018,3.97169657283798,3.73693349397345,4.77372463987812,6.77927793946262,2.6062661364614,0,0.368277635987565,0.632924774881769,0,2.55125159958052,0.628975936525128,1.34794357375794,1.50176892841506,0.48217676009124,0.285012743741249,0.99458338599545,0.730656615058536,0,0,0,0,0.400395987036012,0,0,0,1.1384259382189,1.17447437874188,1.52909291250092,0,0.560508562981536,0.526768169550154,0.590129310341499,0.786021525498329,2.05601498999509,0.167186495390678,0.32592226663359,0,0,0.891283655081389,0,0,0,0.640456598628376,0.520237390239513,0.164437904603676,0.276350017785848,0.579606171470105,0.14828656316206,0,1.04535523804977,0.339928028092699,0,0,0,0,0,0,0.150575119077773,0.127986611154418,0,0.473554504088034,0,2.21767417547206,2.67440195783507,1.73789284659359,2.43806866313962,1.34140171940727,0.255725123687061,0.722878304769133,1.00267582127178,1.01392563272577,0.795285947051099,0,0.189069634328136,0.886917589850256,0.702678285545008,0.72038491523742,0.728590576585084,0.370784442784429,0,0.174129737299267,0.398873881556595,0.715471872916026,0,0.74291500265913,0.79504962946682,0,0.347140501607594,0.56530794192401,1.67799774483962,0.825354125820202,1.04497483268405,0.258416759169329,0.35576626268671,0.33472061276467,0,0,0.488124115096339,0.367663080345869,0.81014194788176,0.535798369704479,0,0.225222960966644,0,0.949265659568129,0.549605231791222,7.9068250461638,0,0.872188104285069,0.496971951695318,1.39293562831038,0.132409180813219,0.860509862246441,0.354668382198357,0.560677600142307,1.06748995729705,0.74000264525148,0.311211035399766,0.404132016209064,0,0.151357427644931,0.576175924479999,0,0.624320153660641,0,1.19558944441441,0.117434498643765,0.323745888736263,0.421352420106746,0.204154171254893,0.61417158655884,0.723280468230358,0,1.23633464639278,0,0,0.168336113954066,0.250237039743928,0.277064115484183,0.438977620880838,0.919463387397059,1.20190447125277,0.226864366320042,0.717558542755448,0.85422955527427,0.211931901159562,0.300091096084402,0.206105058476878,0,0.744467425326359,0.168776332241266,0.194874010322397,0.252433774244115,0.184099797284599,0.323292113637624,0,0.201504196455281,0.847802961552438,0.57978255948989,0.272746120590835,0.860413786167011,1.70763188581434,1.19276791489337,1.74290914304278,1.65857688024593,2.01856680700503,0.72995471815166,1.56449532329816,0.643240938192885,0,0.928735856063958,0.721879481669586,0.236613600079688,0.168584690078102,0.241011029883482,0.330881918197182,0.217879444092406,0,0.134831308160164,0,0,0.738155454624648,2.80483547606892,0.4115740113314,1.47008711385542,1.26755034821831,0,0,0,1.22988438543114,0,0.768251997860379,1.1240175325762,0.201057944823262,0.925884451585296,0.651616610620649,0,0,0.34779121492523,0,0.721832238805369,1.38895653772983,0.761016608938393,1.58040879591855,0,0.246217006087397,0,0.297262324577456,0,0.16798212819886,0.141775097242386,0.268675568108545,0,0,0.985326475791887,1.40877494421162,6.01251535068239,4.32359860250884,4.4184851699233,0.126995788584338,1.90994212779139,3.51652341630141,1.71072446022705,0.411309970813294,0,0.285826432630578,0.112131084345361,1.74384027533312,0.07333828582095,0.129271715757778,0,3.381211010224,0.797814349754612,2.08014873822732,0,0,0.266422179016099,0.428933980974443,1.08524321078289,0.823240336780769,0.977208552881205,0.355391948742546,0,0.602878754119172,0.871533458600294,1.29964888536674,1.2162378064119,2.00902836572851,0,0.479249710983165,0,0,0.289562613335158,0.410952645100767,0.179060963239896,0.336255431980582,0.788123040807709,1.72502059887614,2.82354679815446,3.04913549066956,0,0.773288812777695,1.17261385734044,3.82763250991898,30.7092879818345,65.8155210248855,36.4685651823711,0.981531933753119,2.50085260529839,1.08506009479894,0.623912584592421,0.713715955188647,0.157702415033935,0.35142424497814,0.300946099727719,2.27407504055985,2.0694614258501,0.664225598535437,1.10621501125022,0.868836144680828,0.391602314925481,1.37257369524342,0.413536052245775,3.66714141391649,3.52200940751366,0.303127571446259,1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| |||
|short_description=p8@MIDN | |||
}} |
Latest revision as of 18:27, 15 September 2015
Short description: | p8@MIDN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_MIDN_5end |
Coexpression cluster: | C13_Neutrophils_Eosinophils_CD14_Monocytederived_Whole_Peripheral_CD4 |
Association with transcript: | -456bp_to_BC015089_5end |
EntrezGene: | MIDN |
HGNC: | 16298 |
UniProt: | Q504T8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.86e-21 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.86e-21 | 42 |
myeloid leukocyte | 1.33e-19 | 72 |
defensive cell | 1.85e-19 | 48 |
phagocyte | 1.85e-19 | 48 |
granulocyte monocyte progenitor cell | 2.26e-15 | 67 |
myeloid lineage restricted progenitor cell | 8.25e-15 | 66 |
macrophage dendritic cell progenitor | 2.54e-13 | 61 |
monopoietic cell | 3.54e-13 | 59 |
monocyte | 3.54e-13 | 59 |
monoblast | 3.54e-13 | 59 |
promonocyte | 3.54e-13 | 59 |
leukocyte | 1.81e-11 | 136 |
myeloid cell | 5.27e-10 | 108 |
common myeloid progenitor | 5.27e-10 | 108 |
hematopoietic lineage restricted progenitor cell | 6.38e-09 | 120 |
nongranular leukocyte | 4.86e-08 | 115 |
hematopoietic cell | 3.95e-07 | 177 |
hematopoietic stem cell | 4.79e-07 | 168 |
hematopoietic oligopotent progenitor cell | 6.50e-07 | 161 |
hematopoietic multipotent progenitor cell | 6.50e-07 | 161 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.20e-13 | 76 |
hematopoietic system | 6.45e-13 | 98 |
blood island | 6.45e-13 | 98 |
bone element | 1.03e-11 | 82 |
hemolymphoid system | 5.08e-11 | 108 |
skeletal element | 5.89e-11 | 90 |
immune system | 4.53e-10 | 93 |
skeletal system | 3.66e-09 | 100 |
lateral plate mesoderm | 7.41e-09 | 203 |
mesoderm | 4.27e-07 | 315 |
mesoderm-derived structure | 4.27e-07 | 315 |
presumptive mesoderm | 4.27e-07 | 315 |