FFCP PHASE1:Hg19::chr19:35739597..35739627,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=51599 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29572 | |||
|TSSclassifier=strong | |||
|UniProt=E9PHD4,A6NDW3,Q86X29,Q9BT33,Q9BWS2 | |||
|association_with_transcript=38bp_to_ENST00000354900,ENST00000360798,ENST00000361790,NM_015925,NM_205834,NM_205835,uc002nyl.2,uc002nym.2,uc002nyn.2,uc002nyo.2,uc010xsr.1_5end | |||
|cluster_id=chr19:35739597..35739627,+ | |||
|coexpression_cluster_id=C1817 | |||
|description=CAGE_peak_4_at_LSR_5end | |||
|id=chr19:35739597..35739627,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.79e-28!254;CL:0002076!1.88e-12!43;CL:0000223!7.71e-12!59 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.06e-10;42!CL:1000507;1.95e-10;10!CL:1000494;1.95e-10;10!CL:1000497;4.08e-09;17!CL:0002518;4.08e-09;17!CL:1000449;1.52e-07;15!CL:0002251;5.16e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,6.71e-28,253;CL:0000223,1.36e-13,58;CL:0002076,4.61e-13,42;CL:1000507,1.51e-10,10;CL:1000494,1.51e-10,10;CL:1000497,3.62e-09,17;CL:0002518,3.62e-09,17;CL:1000449,1.27e-07,15;CL:0002251,7.00e-07,20 | |||
|ontology_enrichment_development_v019=CL:0000223;2.28e-07;58 | |||
|ontology_enrichment_disease=DOID:305!1.34e-21!106;DOID:0050687!1.13e-14!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.66e-14,106;DOID:0050687,1.10e-10,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!8.85e-14!169;UBERON:0000925!8.85e-14!169;UBERON:0006595!8.85e-14!169;UBERON:0005177!1.40e-12!107;UBERON:0001007!1.76e-10!155;UBERON:0001555!1.76e-10!155;UBERON:0007026!1.76e-10!155;UBERON:0004921!5.68e-10!129;UBERON:0004185!5.68e-10!129;UBERON:0000077!6.22e-10!130;UBERON:0001008!9.82e-10!45;UBERON:0006554!1.34e-09!44;UBERON:0000466!1.62e-09!126;UBERON:0001041!4.11e-09!98;UBERON:0005172!4.51e-09!55;UBERON:0005173!4.51e-09!55;UBERON:0000464!7.99e-09!104;UBERON:0005911!2.41e-08!82;UBERON:0002113!3.33e-08!27;UBERON:0003918!3.33e-08!27;UBERON:0005095!3.33e-08!27;UBERON:0007687!3.33e-08!27;UBERON:0000489!4.17e-08!32;UBERON:0001004!5.74e-08!72;UBERON:0009569!1.50e-07!113;UBERON:0000064!2.22e-07!219;UBERON:0005157!3.39e-07!51;UBERON:0000058!3.82e-07!26;UBERON:0005631!6.56e-07!14;UBERON:0000158!6.56e-07!14;UBERON:0002417!8.18e-07!61;UBERON:0000916!8.18e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;1.03e-10;30!UBERON:0001008;1.03e-10;30!UBERON:0004211;1.95e-10;10!UBERON:0009773;1.95e-10;10!UBERON:0001231;1.95e-10;10!UBERON:0004810;1.95e-10;10!UBERON:0002113;5.53e-08;24!UBERON:0011143;5.53e-08;24!UBERON:0006555;1.52e-07;15!UBERON:0004819;1.52e-07;15!UBERON:0001285;1.52e-07;15!UBERON:0007684;1.52e-07;15!UBERON:0001851;4.82e-07;15!UBERON:0005631;5.63e-07;10!UBERON:0000158;5.63e-07;10!UBERON:0000489;8.84e-07;29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006554,2.38e-13,47;UBERON:0005177,2.81e-13,101;UBERON:0001008,7.42e-13,48;UBERON:0004810,1.51e-10,10;UBERON:0004119,2.22e-10,160;UBERON:0000925,2.22e-10,160;UBERON:0006595,2.22e-10,160;UBERON:0005172,3.46e-10,54;UBERON:0005173,3.46e-10,54;UBERON:0005631,6.12e-10,14;UBERON:0000158,6.12e-10,14;UBERON:0002113,4.36e-09,26;UBERON:0003918,4.36e-09,26;UBERON:0011143,4.36e-09,26;UBERON:0005095,4.36e-09,26;UBERON:0007687,4.36e-09,26;UBERON:0005911,4.56e-09,82;UBERON:0009569,1.40e-08,112;UBERON:0002417,3.04e-08,60;UBERON:0000916,3.04e-08,60;UBERON:0006555,6.19e-08,16;UBERON:0004819,6.19e-08,16;UBERON:0000489,9.84e-08,31;UBERON:0004211,1.27e-07,15;UBERON:0009773,1.27e-07,15;UBERON:0001231,1.27e-07,15;UBERON:0001285,1.27e-07,15;UBERON:0007684,1.27e-07,15;UBERON:0004208,1.27e-07,15;UBERON:0001851,3.11e-07,15;UBERON:0003124,3.47e-07,7;UBERON:0001007,4.01e-07,145;UBERON:0001555,4.01e-07,145;UBERON:0007026,4.01e-07,145 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,1.96587149201207,7.6758128476967,3.05817920982241,2.63766978228454,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0.125542639594803,1.98674854944673,1.9704141467987,2.04648031415566,0.393364276848904,0,0.309632246632152,2.75826367343678,3.31326510656075,2.58827807116751,0.542270404062111,0.284338464974843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398927315243264,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0.800791974072025,0,0,0,0,0,0.382273228125229,0,0,0,0.786839080455332,1.17903228824749,1.02800749499755,2.67498392625085,0.977766799900771,1.4203434172042,0,1.22551502573691,0.589211814949674,0.886135578334485,0,1.66518715643378,2.34106825607781,0.493313713811028,0.276350017785848,0.289803085735052,0.593146252648242,0.267540828089713,2.09071047609954,0.339928028092699,0,0.68725489096526,0.253019692019503,1.91139248594458,0,0,0.451725357233318,0.639933055772092,0,0,0,0.403213486449465,0.267440195783507,0.289648807765598,0,0,0.12786256184353,0,0,0,0,0,0.661743720148475,0.886917589850256,0.43917392846563,1.5062593682237,2.91436230634034,1.85392221392215,0.324547393654683,0.522389211897802,1.19662164466979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.61656431285521,0,0,0,0,0,0,0,0,0.311211035399766,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355009592516614,0,0,3.09217365061275,2.72746120590835,4.01526433544605,2.31750041646231,2.51806559810822,1.62671520017326,1.55491582523056,1.7662459561294,1.45990943630332,0,0,0,0,0,0.354920400119532,0.842923450390509,0,0.772057809126758,0.871517776369625,0.474541238222193,0.808987848960987,0.588664395376038,0.38474715694639,0,0,0.4115740113314,0,0,0,0.590789906681404,0,1.8448265781467,0.514703430895577,2.08525542276389,0,1.60846355858609,1.574003567695,0,0,0,2.66639931442677,0,0,0.462985512576611,0,2.37061319387782,0,0,0.468008530278475,0.148631162288728,0,1.6798212819886,2.26840155587818,1.52249488594842,1.45316969256981,2.68367875415648,0,0.088048434013226,3.52457796419313,3.17063897517315,4.16600030307054,0,0,0,1.71072446022705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.899756920638513,1.2162378064119,0,2.10833939483032,0,0,0,0,0,0,0,0,0,0.385029108839245,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.215714200818617,0.106727557803444,3.33440328590885,1.66435439510497,1.5119514666484,0,0,0,0,0,0,0,0,0,0,0,0,1.93375119346596,2.6065841139427,2.20994373446151,0,0,0,3.15839729035188,2.92658280996776,6.27479815341484,7.30696123266303,2.63879072232189,0,0,0.215915916102139,0,3.25135725052623,3.01013864312912,2.80363900349542,1.66215201785745,1.34324852833307,0,0,1.28225062558195,1.64007322849853,3.25378394664303,2.7821073144885,0,0,1.14853107599234,1.95018073810956,0,0,0,0,0,0,0,0.0852266274161009,0,1.4875642382488,1.53752053892085,1.65896526242959,0.809262246844399,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15466535270614,0.670302275535787,1.08890984861323,2.7301702225266,3.44404298136984,1.68471475667626,3.54744122829341,1.60806380144872,0.507447609232169,1.52927441428475,1.70894156152249,0.238231775457789,0,0,0,0.79312517629427,0.961416640147258,0.962479855263359,2.45040215981032,0,0,0,0,0,0,0,0,0,0,0,2.50634477090067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,2.05111450980652,4.85442086998054,0,0,5.01363417949149,2.96964680832639,5.52889263778618,0,0.140669416410513,0,0,0.844501632511974,1.59398390600856,0,0.503865495708552,1.02268682502155,1.72318727645497,0,1.25815691606258,2.32727527078292,0,0.493217028184668,0,0,0.969332746095218,0.185536196323703,0,0.260427761085233,0.437299999980979,1.44999915086959,2.27586896570999,2.03402920234213,1.41832609060762,0,0,0.347249989866585,0,0.361789315876224,0,0,0.295547618953547,0.658156191461918,0.435753854075961,1.25481369850743,0.692552326534174,1.48124672601102,1.84451123510448,2.69272933229316,1.52106320690811,4.78501739597879,1.09917112082235,9.59462596833542,0,0,0.166211681900156,1.1279783030859,0.784250137270958,1.84603745673427,0.189753732724185,0,1.47698645169619,0.979396848954886,2.82706142867882,0,2.98578579323551,0.973033209536731,0.611030144933625,0,0,0,0.067401132980677,0,0,0.182454789215666,1.36965233252463,0,4.3404284313433,0,0.30607276163049,0.884612114798832,0.751617097072463,1.45163467956146,0.664653872707185,0,0.941798755221676,0,0.569219092059585,2.63481878724963,1.73559738335131,1.95984794828755,1.91530254476886,1.04836000945218,1.37588825977293,1.45134496933628,1.0232504392066,1.06750094169172,0.969890164884194,0.617792886840502,0.90392296312213,0,1.39100228192093,0.0633107959558787,3.71547627196126,1.44285876452761,0.426905989478705,4.59562102038899,2.16135625731159,2.86341490414789,1.37275998289572,3.31326035372744,0.869767748958028,3.77110455386873,0,0.104602846312333,0,0,0,0.410716136675979,0,0,0,0.279282401272254,1.60412296808179,0,1.39775300349294,0.858452096273142,0.446342914883745,0.739018197353989,0,0,2.59984501613838,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| |||
|short_description=p4@LSR | |||
}} |
Latest revision as of 10:55, 17 September 2015
Short description: | p4@LSR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LSR_5end |
Coexpression cluster: | C1817_Alveolar_smallcell_acantholytic_Hepatocyte_squamous_liver_mesothelioma |
Association with transcript: | 38bp_to_ENST00000354900, ENST00000360798, ENST00000361790, NM_015925, NM_205834, NM_205835, uc002nyl.2, uc002nym.2, uc002nyn.2, uc002nyo.2, uc010xsr.1_5end |
EntrezGene: | LSR |
HGNC: | 29572 |
UniProt: | E9PHD4A6NDW3Q86X29Q9BT33Q9BWS2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 6.71e-28 | 253 |
endodermal cell | 1.36e-13 | 58 |
endo-epithelial cell | 4.61e-13 | 42 |
kidney tubule cell | 1.51e-10 | 10 |
nephron tubule epithelial cell | 1.51e-10 | 10 |
kidney cell | 3.62e-09 | 17 |
kidney epithelial cell | 3.62e-09 | 17 |
epithelial cell of nephron | 1.27e-07 | 15 |
epithelial cell of alimentary canal | 7.00e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
urinary system structure | 2.38e-13 | 47 |
trunk region element | 2.81e-13 | 101 |
renal system | 7.42e-13 | 48 |
nephron tubule epithelium | 1.51e-10 | 10 |
endoderm-derived structure | 2.22e-10 | 160 |
endoderm | 2.22e-10 | 160 |
presumptive endoderm | 2.22e-10 | 160 |
abdomen element | 3.46e-10 | 54 |
abdominal segment element | 3.46e-10 | 54 |
extraembryonic membrane | 6.12e-10 | 14 |
membranous layer | 6.12e-10 | 14 |
kidney | 4.36e-09 | 26 |
kidney mesenchyme | 4.36e-09 | 26 |
upper urinary tract | 4.36e-09 | 26 |
kidney rudiment | 4.36e-09 | 26 |
kidney field | 4.36e-09 | 26 |
endo-epithelium | 4.56e-09 | 82 |
subdivision of trunk | 1.40e-08 | 112 |
abdominal segment of trunk | 3.04e-08 | 60 |
abdomen | 3.04e-08 | 60 |
excretory tube | 6.19e-08 | 16 |
kidney epithelium | 6.19e-08 | 16 |
cavitated compound organ | 9.84e-08 | 31 |
nephron epithelium | 1.27e-07 | 15 |
renal tubule | 1.27e-07 | 15 |
nephron tubule | 1.27e-07 | 15 |
nephron | 1.27e-07 | 15 |
uriniferous tubule | 1.27e-07 | 15 |
nephrogenic mesenchyme | 1.27e-07 | 15 |
cortex | 3.11e-07 | 15 |
chorion | 3.47e-07 | 7 |
digestive system | 4.01e-07 | 145 |
digestive tract | 4.01e-07 | 145 |
primitive gut | 4.01e-07 | 145 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.66e-14 | 106 |
cell type cancer | 1.10e-10 | 143 |