FFCP PHASE1:Hg19::chr2:238807387..238807393,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr2:238807387..238807393,- | |||
|coexpression_cluster_id=C80 | |||
|description=CAGE_peak_at_chr2:238807387..238807393,- | |||
|id=chr2:238807387..238807393,- | |||
|ontology_enrichment_celltype=CL:0000451!2.60e-18!10;CL:0000990!1.07e-13!8;CL:0000453!1.78e-13!5;CL:0000738!1.27e-11!140;CL:0002393!8.41e-10!9;CL:0002397!8.41e-10!9;CL:0000623!2.73e-09!3;CL:0000825!2.73e-09!3;CL:0000784!9.33e-09!3;CL:0000037!9.40e-09!172;CL:0000566!9.40e-09!172;CL:0000988!7.81e-08!182;CL:0000840!1.10e-07!5;CL:0001029!1.10e-07!5;CL:0001014!4.25e-07!2;CL:0001016!4.25e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0001014;1.30e-37;2!CL:0001016;1.30e-37;2!CL:0002032;3.25e-19;1!CL:0000557;3.25e-19;1!CL:0000453;1.05e-15;5!CL:0000840;2.95e-13;5!CL:0000990;3.77e-09;8!CL:0000451;1.20e-07;10!CL:0000767;2.12e-07;3!CL:0000623;2.79e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0001014,1.30e-37,2;CL:0001016,1.30e-37,2;CL:0000453,1.05e-15,5;CL:0000840,2.95e-13,5;CL:0001029,2.95e-13,5;CL:0000990,3.77e-09,8;CL:0000451,1.20e-07,10;CL:0000767,2.05e-07,3;CL:0000623,2.79e-07,3;CL:0000825,2.79e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0005062;6.15e-41;4!UBERON:0007284;6.15e-41;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!8.53e-12!115;UBERON:0003978!1.16e-09!3;UBERON:0009751!1.16e-09!3;UBERON:0000946!1.16e-09!3;UBERON:0002523!1.16e-09!3;UBERON:0005983!1.16e-09!3;UBERON:0002165!1.16e-09!3;UBERON:0002062!1.16e-09!3;UBERON:0007280!1.16e-09!3;UBERON:0002240!1.84e-08!3;UBERON:0000988!6.02e-08!3;UBERON:0003076!1.91e-07!15;UBERON:0003057!1.91e-07!15;UBERON:0002133!5.04e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0003978;2.85e-54;3!UBERON:0000946;2.85e-54;3!UBERON:0002133;6.22e-37;2!UBERON:0002134;1.42e-19;1!UBERON:0005208;1.42e-19;1!UBERON:0004145;1.42e-19;1!UBERON:0005946;1.42e-19;1!UBERON:0005965;1.42e-19;1!UBERON:0002078;1.42e-19;1!UBERON:0002135;3.25e-19;1!UBERON:0002146;3.25e-19;1!UBERON:0005623;3.25e-19;1!UBERON:0010313;7.48e-17;10!UBERON:0002081;1.80e-10;2!UBERON:0002360;2.72e-10;2!UBERON:0000094;2.72e-10;2!UBERON:0010743;2.72e-10;2!UBERON:0000948;5.32e-08;22!UBERON:0004151;2.12e-07;3!UBERON:0007100;4.18e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003978,2.17e-54,3;UBERON:0009751,2.17e-54,3;UBERON:0000946,2.17e-54,3;UBERON:0002523,2.17e-54,3;UBERON:0005983,2.17e-54,3;UBERON:0002165,2.17e-54,3;UBERON:0002062,2.17e-54,3;UBERON:0007280,2.17e-54,3;UBERON:0002133,3.94e-37,2;UBERON:0004797,8.36e-24,7;UBERON:0002134,1.56e-19,1;UBERON:0005208,1.56e-19,1;UBERON:0005946,1.56e-19,1;UBERON:0005965,1.56e-19,1;UBERON:0002078,1.56e-19,1;UBERON:0002135,1.88e-19,1;UBERON:0002146,3.91e-19,1;UBERON:0005623,3.91e-19,1;UBERON:0010313,6.90e-17,10;UBERON:0002342,6.90e-17,10;UBERON:0005062,6.90e-17,10;UBERON:0002081,1.89e-10,2;UBERON:0010227,1.89e-10,2;UBERON:0002360,3.27e-10,2;UBERON:0000094,3.27e-10,2;UBERON:0010743,3.27e-10,2;UBERON:0000948,2.15e-07,24;UBERON:0005498,2.15e-07,24;UBERON:0004140,2.15e-07,24;UBERON:0009881,2.15e-07,24;UBERON:0004141,2.15e-07,24;UBERON:0003084,2.15e-07,24;UBERON:0007005,2.15e-07,24;UBERON:0004139,2.15e-07,24;UBERON:0004291,2.15e-07,24;UBERON:0004151,2.19e-07,3;UBERON:0004145,2.19e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.75354993794233,0,0.464448369948228,0,0,0,0,0,0,0.553995408531877,0.200544447470142,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368277635987565,0,0.422510572623884,0.212604299965044,0,1.34794357375794,0.300353785683013,0.16072558669708,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0.569212969109448,0,0,0,0.560508562981536,0,0,0,0.205601498999509,0.334372990781356,0,0,0,0,0,0,0,0.128091319725675,0,0,0,0,0,0,1.04535523804977,0,0.383220493601921,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0.267440195783507,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0.324547393654683,0,0,0.238490624305342,0.571994910780128,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414656231081544,0,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.591092280605782,0.431255149719035,1.15508732651774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431428401637234,0.320182673410333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0.796991953004279,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09692698576986,0,0,0.0769502585037971,0,0,0.0897576444097721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0.404406797884062,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27746588066972,0,0,1.67569440763353,1.14580212005842,2.15361907373044,0,0,0.669514372325618,0.134366944973453,0,0,0,0,0,0,0,0,0,0,0,0,6.29926896344201,3.86900977278975,0,0,0,0,0,0,0,0,0.662091970365432,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.26446520348538,0,0,0.106787412567695,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0.554645257684261,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0.132864840313363,0.327130788511688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135939465953663,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0.245148321753905,0,0.196308467114945,0.297046400327086,0.4226557275834,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0.0679914901909147,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0,0,0,0.0620747142958579,0,0,0,0.217716747896961,0.342233301085281,0,0.143444410785353,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr2:238807387..238807393,- | |||
}} |
Latest revision as of 08:17, 29 July 2015
Short description: | p@chr2:238807387..238807393, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:238807387..238807393, - |
Coexpression cluster: | C80_immature_migratory_CD14_Dendritic_splenic_cord_Mast |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD1a-positive Langerhans cell | 1.30e-37 | 2 |
immature CD1a-positive Langerhans cell | 1.30e-37 | 2 |
Langerhans cell | 1.05e-15 | 5 |
immature conventional dendritic cell | 2.95e-13 | 5 |
common dendritic progenitor | 2.95e-13 | 5 |
conventional dendritic cell | 3.77e-09 | 8 |
dendritic cell | 1.20e-07 | 10 |
basophil | 2.05e-07 | 3 |
natural killer cell | 2.79e-07 | 3 |
pro-NK cell | 2.79e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
valve | 2.17e-54 | 3 |
cardiac mesenchyme | 2.17e-54 | 3 |
cardial valve | 2.17e-54 | 3 |
tunica intima | 2.17e-54 | 3 |
heart layer | 2.17e-54 | 3 |
endocardium | 2.17e-54 | 3 |
endocardial cushion | 2.17e-54 | 3 |
presumptive endocardium | 2.17e-54 | 3 |
atrioventricular valve | 3.94e-37 | 2 |
blood vessel layer | 8.36e-24 | 7 |
tricuspid valve | 1.56e-19 | 1 |
right atrium valve | 1.56e-19 | 1 |
outflow tract of atrium | 1.56e-19 | 1 |
outflow part of right atrium | 1.56e-19 | 1 |
right cardiac atrium | 1.56e-19 | 1 |
mitral valve | 1.88e-19 | 1 |
pulmonary valve | 3.91e-19 | 1 |
semi-lunar valve | 3.91e-19 | 1 |
neural crest-derived structure | 6.90e-17 | 10 |
neural crest | 6.90e-17 | 10 |
neural fold | 6.90e-17 | 10 |
cardiac atrium | 1.89e-10 | 2 |
future cardiac atrium | 1.89e-10 | 2 |
meninx | 3.27e-10 | 2 |
membrane organ | 3.27e-10 | 2 |
meningeal cluster | 3.27e-10 | 2 |
heart | 2.15e-07 | 24 |
primitive heart tube | 2.15e-07 | 24 |
primary heart field | 2.15e-07 | 24 |
anterior lateral plate mesoderm | 2.15e-07 | 24 |
heart tube | 2.15e-07 | 24 |
heart primordium | 2.15e-07 | 24 |
cardiac mesoderm | 2.15e-07 | 24 |
cardiogenic plate | 2.15e-07 | 24 |
heart rudiment | 2.15e-07 | 24 |
cardiac chamber | 2.19e-07 | 3 |
outflow tract | 2.19e-07 | 3 |