FFCP PHASE1:Hg19::chr9:85677796..85677816,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr9:85677796..85677816,-
|short_description=p4@RASEF
|description=CAGE_peak_4_at_RASEF_5end
|association_with_transcript=226bp_to_ENST00000376447,NM_152573,uc0...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=158158 | |EntrezGene=158158 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26464 | |HGNC=26464 | ||
|TSSclassifier=strong | |||
|UniProt=Q8IZ41 | |UniProt=Q8IZ41 | ||
|association_with_transcript=226bp_to_ENST00000376447,NM_152573,uc004amo.1,uc004amp.1_5end | |||
|cluster_id=chr9:85677796..85677816,- | |||
|description=CAGE_peak_4_at_RASEF_5end | |||
|id=chr9:85677796..85677816,- | |||
|ontology_enrichment_celltype=CL:0000066!2.47e-12!254;CL:0002076!4.84e-08!43 | |||
|ontology_enrichment_celltype_v019=CL:0002251;3.95e-08;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002251,2.85e-08,20;CL:0002076,1.19e-07,42;CL:0000066,6.34e-07,253 | |||
|ontology_enrichment_development_v019=UBERON:0006595;2.93e-11;86!UBERON:0008947;3.17e-07;29!UBERON:0007297;3.39e-07;2!UBERON:0001041;5.06e-07;30 | |||
|ontology_enrichment_disease=DOID:305!4.45e-30!106;DOID:0050687!2.13e-23!143;DOID:1749!4.71e-15!14;DOID:14566!3.14e-12!239;DOID:162!1.06e-11!235;DOID:299!2.08e-11!25;DOID:0050615!2.69e-08!16;DOID:1324!3.29e-07!15 | |||
|ontology_enrichment_disease_v019=DOID:1749;8.68e-29;14!DOID:299;1.47e-12;25!DOID:305;1.21e-09;106!DOID:0050615;2.85e-09;16!DOID:1324;2.41e-07;15!DOID:3493;7.74e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,3.85e-29,14;DOID:305,4.98e-27,106;DOID:0050687,3.46e-20,143;DOID:299,8.79e-13,25;DOID:14566,2.13e-11,239;DOID:162,3.00e-10,235;DOID:0050615,2.70e-09,16;DOID:1324,2.29e-07,15;DOID:3493,4.65e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.76e-21!169;UBERON:0000925!1.76e-21!169;UBERON:0006595!1.76e-21!169;UBERON:0001007!4.39e-21!155;UBERON:0001555!4.39e-21!155;UBERON:0007026!4.39e-21!155;UBERON:0004921!1.49e-19!129;UBERON:0004185!1.49e-19!129;UBERON:0000077!1.81e-16!130;UBERON:0000464!4.46e-15!104;UBERON:0000466!9.62e-14!126;UBERON:0001041!5.29e-13!98;UBERON:0001004!2.66e-12!72;UBERON:0005153!1.34e-10!37;UBERON:0005911!2.04e-09!82;UBERON:0000065!2.56e-09!53;UBERON:0000161!3.44e-09!35;UBERON:0002048!1.43e-08!22;UBERON:0000117!1.43e-08!22;UBERON:0000171!1.43e-08!22;UBERON:0000170!1.43e-08!22;UBERON:0005597!1.43e-08!22;UBERON:0000118!1.43e-08!22;UBERON:0002553!2.34e-08!70;UBERON:0005177!2.45e-08!107;UBERON:0005178!5.16e-08!34;UBERON:0002224!5.16e-08!34;UBERON:0005156!9.23e-08!59;UBERON:0000990!9.23e-08!59;UBERON:0005181!1.22e-07!35;UBERON:0005409!2.57e-07!35;UBERON:0002294!3.60e-07!7;UBERON:0001173!3.60e-07!7;UBERON:0004912!3.60e-07!7;UBERON:0000974!8.52e-07!10;UBERON:0001048!9.87e-07!168 | |||
|ontology_enrichment_uberon_v019=UBERON:0000058;1.22e-14;10!UBERON:0003343;5.05e-12;4!UBERON:0004785;5.05e-12;4!UBERON:0000161;2.71e-11;19!UBERON:0000166;2.71e-11;19!UBERON:0002294;7.79e-11;7!UBERON:0001173;7.79e-11;7!UBERON:0004921;2.18e-10;33!UBERON:0006947;3.75e-10;3!UBERON:0004054;3.75e-10;3!UBERON:0001041;8.73e-10;14!UBERON:0000165;8.25e-09;28!UBERON:0001044;1.32e-08;6!UBERON:0003293;1.32e-08;6!UBERON:0003294;1.32e-08;6!UBERON:0010047;1.32e-08;6!UBERON:0003408;1.32e-08;6!UBERON:0000167;1.32e-08;6!UBERON:0004175;4.41e-08;21!UBERON:0000974;4.94e-08;6!UBERON:0005904;1.05e-07;4!UBERON:0002394;1.93e-07;4!UBERON:0003928;1.93e-07;4!UBERON:0001829;3.39e-07;2!UBERON:0001555;4.22e-07;54!UBERON:0001255;7.74e-07;2!UBERON:0003127;7.74e-07;2!UBERON:0006562;7.74e-07;2!UBERON:0001556;7.74e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001007,4.54e-19,145;UBERON:0001555,4.54e-19,145;UBERON:0007026,4.54e-19,145;UBERON:0004119,2.01e-16,160;UBERON:0000925,2.01e-16,160;UBERON:0006595,2.01e-16,160;UBERON:0004921,5.05e-14,118;UBERON:0003343,6.29e-12,4;UBERON:0004785,6.29e-12,4;UBERON:0001041,1.48e-11,87;UBERON:0001004,1.56e-11,74;UBERON:0000166,1.74e-11,22;UBERON:0000161,7.89e-11,36;UBERON:0006947,5.49e-10,3;UBERON:0004054,5.49e-10,3;UBERON:0002294,1.35e-08,9;UBERON:0001173,1.35e-08,9;UBERON:0004912,1.35e-08,9;UBERON:0001044,1.45e-08,6;UBERON:0003293,1.45e-08,6;UBERON:0003294,1.45e-08,6;UBERON:0010047,1.45e-08,6;UBERON:0000167,1.45e-08,6;UBERON:0000165,3.03e-08,29;UBERON:0000930,3.03e-08,29;UBERON:0005904,1.39e-07,4;UBERON:0005178,2.34e-07,34;UBERON:0002224,2.34e-07,34;UBERON:0000058,3.25e-07,19;UBERON:0001829,3.74e-07,2;UBERON:0005181,4.32e-07,35;UBERON:0003127,4.51e-07,2;UBERON:0005911,6.71e-07,82 | |||
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| ||
|short_description=p4@RASEF | |||
}} | }} |
Latest revision as of 23:55, 17 September 2015
Short description: | p4@RASEF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RASEF_5end |
Coexpression cluster: | NA |
Association with transcript: | 226bp_to_ENST00000376447, NM_152573, uc004amo.1, uc004amp.1_5end |
EntrezGene: | RASEF |
HGNC: | 26464 |
UniProt: | Q8IZ41 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of alimentary canal | 2.85e-08 | 20 |
endo-epithelial cell | 1.19e-07 | 42 |
epithelial cell | 6.34e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
digestive system | 4.54e-19 | 145 |
digestive tract | 4.54e-19 | 145 |
primitive gut | 4.54e-19 | 145 |
endoderm-derived structure | 2.01e-16 | 160 |
endoderm | 2.01e-16 | 160 |
presumptive endoderm | 2.01e-16 | 160 |
subdivision of digestive tract | 5.05e-14 | 118 |
mucosa of oral region | 6.29e-12 | 4 |
respiratory system mucosa | 6.29e-12 | 4 |
foregut | 1.48e-11 | 87 |
respiratory system | 1.56e-11 | 74 |
oral opening | 1.74e-11 | 22 |
orifice | 7.89e-11 | 36 |
male genital duct | 5.49e-10 | 3 |
internal male genitalia | 5.49e-10 | 3 |
biliary system | 1.35e-08 | 9 |
biliary tree | 1.35e-08 | 9 |
biliary bud | 1.35e-08 | 9 |
saliva-secreting gland | 1.45e-08 | 6 |
gland of oral region | 1.45e-08 | 6 |
gland of foregut | 1.45e-08 | 6 |
oral gland | 1.45e-08 | 6 |
oral cavity | 1.45e-08 | 6 |
mouth | 3.03e-08 | 29 |
stomodeum | 3.03e-08 | 29 |
duct of male reproductive system | 1.39e-07 | 4 |
thoracic cavity element | 2.34e-07 | 34 |
thoracic cavity | 2.34e-07 | 34 |
duct | 3.25e-07 | 19 |
major salivary gland | 3.74e-07 | 2 |
thoracic segment organ | 4.32e-07 | 35 |
open tracheal system trachea | 4.51e-07 | 2 |
endo-epithelium | 6.71e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 3.85e-29 | 14 |
carcinoma | 4.98e-27 | 106 |
cell type cancer | 3.46e-20 | 143 |
adenocarcinoma | 8.79e-13 | 25 |
disease of cellular proliferation | 2.13e-11 | 239 |
cancer | 3.00e-10 | 235 |
respiratory system cancer | 2.70e-09 | 16 |
lung cancer | 2.29e-07 | 15 |
signet ring cell adenocarcinoma | 4.65e-07 | 2 |