FFCP PHASE1:Hg19::chr6:31550094..31550103,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4050 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6711 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=79bp_to_ENST00000482429_5end | |||
|cluster_id=chr6:31550094..31550103,- | |||
|coexpression_cluster_id=C1103 | |||
|description=CAGE_peak_3_at_LTB_5end | |||
|id=chr6:31550094..31550103,- | |||
|ontology_enrichment_celltype=CL:0000738!6.99e-54!140;CL:0002087!4.10e-52!119;CL:0000037!1.38e-50!172;CL:0000566!1.38e-50!172;CL:0002031!1.96e-49!124;CL:0000988!7.02e-46!182;CL:0002032!7.92e-45!165;CL:0000837!7.92e-45!165;CL:0000542!2.32e-38!53;CL:0000051!2.32e-38!53;CL:0000838!1.25e-37!52;CL:0000791!6.55e-20!18;CL:0000789!6.55e-20!18;CL:0002420!6.55e-20!18;CL:0002419!6.55e-20!18;CL:0000790!6.55e-20!18;CL:0000084!1.16e-18!25;CL:0000827!1.16e-18!25;CL:0000945!1.84e-17!24;CL:0000826!1.84e-17!24;CL:0000557!1.65e-16!71;CL:0000839!8.65e-15!70;CL:0000766!2.05e-14!76;CL:0002009!2.73e-14!65;CL:0002057!4.19e-14!42;CL:0000236!4.26e-14!14;CL:0002194!4.74e-14!63;CL:0000576!4.74e-14!63;CL:0000040!4.74e-14!63;CL:0000559!4.74e-14!63;CL:0000763!2.82e-13!112;CL:0000049!2.82e-13!112;CL:0000625!7.07e-13!11;CL:0000860!1.42e-12!45;CL:0000134!1.01e-10!358;CL:0002320!5.52e-10!365;CL:0002393!1.48e-08!9;CL:0002397!1.48e-08!9;CL:0000624!7.90e-08!6;CL:0000219!1.78e-07!390 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.28e-28;18!CL:0000789;1.28e-28;18!CL:0002419;1.28e-28;18!CL:0000542;5.50e-22;53!CL:0000236;1.57e-21;13!CL:0000084;2.20e-19;25!CL:0000945;4.41e-19;24!CL:0000625;4.49e-19;11!CL:0000624;3.62e-13;6!CL:0000875;1.49e-08;3!CL:0002396;1.49e-08;3!CL:0002087;5.89e-08;104!CL:0000898;1.65e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,1.26e-37,52;CL:0000542,9.84e-37,53;CL:0000051,9.84e-37,53;CL:0000791,3.97e-29,18;CL:0000789,3.97e-29,18;CL:0002420,3.97e-29,18;CL:0002419,3.97e-29,18;CL:0000790,3.97e-29,18;CL:0002087,8.45e-23,115;CL:0000037,5.89e-20,168;CL:0000738,9.17e-20,136;CL:0000084,9.74e-20,25;CL:0000827,9.74e-20,25;CL:0000236,1.07e-19,14;CL:0000625,1.69e-19,11;CL:0000945,3.70e-19,24;CL:0000826,3.70e-19,24;CL:0002031,6.35e-19,120;CL:0000988,2.76e-18,177;CL:0002032,3.69e-18,161;CL:0000837,3.69e-18,161;CL:0000624,2.81e-13,6;CL:0002393,1.14e-09,9;CL:0002397,1.14e-09,9;CL:0000875,1.51e-08,3;CL:0002396,1.51e-08,3;CL:0000898,1.47e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;1.28e-28;18!CL:0000051;5.50e-22;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!2.70e-28!112;UBERON:0002390!5.60e-26!102;UBERON:0003061!5.60e-26!102;UBERON:0002405!5.82e-16!115;UBERON:0002371!4.13e-14!80;UBERON:0001474!3.01e-12!86;UBERON:0000178!1.80e-10!15;UBERON:0000179!1.80e-10!15;UBERON:0000463!1.80e-10!15;UBERON:0004765!3.13e-09!101;UBERON:0001434!3.13e-09!101;UBERON:0002384!5.40e-09!375;UBERON:0003081!7.26e-09!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;8.56e-17;15!UBERON:0000179;8.56e-17;15!UBERON:0000463;8.56e-17;15!UBERON:0002390;2.30e-11;32!UBERON:0002193;1.93e-08;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.20e-16,15;UBERON:0000179,1.20e-16,15;UBERON:0000463,1.20e-16,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.164201178899891,0.0787107813136792,0,0,0.154816123316076,0,0,0,2.63388481973026,1.56386155736164,0.587200878669695,0.553995408531877,0.200544447470142,0,0,0.32389366601898,0,0.581592955118259,0.377875943688809,0.970336244751265,0.232429036905685,0,0.309706370895104,0,0.256160706529101,0,0,0.645484683583826,0,0.188242339542605,0,0.674170453335254,0,0.320929027076094,0,0.989553900560148,0.199463657621632,0.426224750532694,0.290209238628584,0.56738522469114,0,0,0,0.434377689410233,0.605399502633369,0,0.632924774881769,4.64761629886272,3.82687739937078,3.77385561915077,0.786300418025466,1.05123824989054,0.32145117339416,9.12040779971995,6.76316702476906,9.31587184199633,10.5597746676794,13.1073266702912,14.2321480618169,8.10787422876364,12.0118796110804,9.77079147922622,9.91567309177293,5.72432252721218,2.27685187643779,2.34894875748376,1.14681968437569,1.32171328579026,0,1.31692042387539,1.57367816091066,2.75107533924415,2.05601498999509,15.046784585161,1.30368906653436,1.4203434172042,3.89653456815823,7.24167969753628,2.94605907474837,4.2091439970888,1.89562704635511,12.5529493331162,11.1851038901495,11.675091226861,12.1594007825773,11.302320343667,2.07601188426885,1.87278579662799,2.09071047609954,11.8974809832444,4.21542542962113,2.06176467289578,1.51811815211702,5.09704662918555,1.95325036156926,2.85135613334512,2.55977702432214,3.07167866770604,3.74792179657038,3.31488152861624,2.46338399076314,1.81446068902259,0.267440195783507,1.59306844271079,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0.324547393654683,0.174129737299267,0.531831842075461,0.715471872916026,0.571994910780128,0.74291500265913,0,0,0,0,0.419499436209906,0,0.208994966536811,0,0.35576626268671,0,1.61131726843659,0,2.19655851793353,0,0.81014194788176,0.0892997282840798,0,0.225222960966644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,1.40241773803446,0,0,0,0,0,1.32438929824395,0,0,0.109750285408626,0,0,0,0,0,0,0,0,0.433099343283221,0.462985512576611,0.570762456703795,0,0,0.246217006087397,0.234004265139238,0.148631162288728,0,0.16798212819886,0,0,0,0,0.492663237895943,0.088048434013226,0,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.896681151948218,0.591092280605782,0.431255149719035,1.15508732651774,0,0,0,0,0,0,0,1.24324654030811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.06768026122887,0.431428401637234,1.17400313583789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15403067420883,0,0,0.105551628892876,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,1.52234282769651,5.35246044999663,5.69647187174163,3.81170840732462,6.17043409629291,4.53931317834902,1.08006287447623,6.34500141035416,0,0,0,0.371606350251437,0,0.284567373393656,0.159426272728822,0.199579371432817,2.2980644415884,6.1385338989926,0,0,0,0,0,2.53937666702405,3.05117342697029,0,0,0,0,0.223676107892416,0.166849141711909,0,0.278406173895242,0,1.6227340708559,0,0,0,0,0,0.334330152832435,0,0,0,0,0,0,0,0,0,0,1.10513566212459,0,0,0,0,0,0,0,0,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0.0915975934018623,0,0,0,0.332423363800313,0,0,0,0,0,0.210998064528027,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0.364909578431332,0,0,0,1.20990716048664,0,0.063186579628488,0,0,0,0,0,0,1.13843818411917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400794101257669,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27746588066972,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0.415440338029185,0.899895566206002,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0.828478110694391,1.48849806543585,0,1.94868157409433,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0,0,0,0.39997479170986,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0.31020638566432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0.218559560503957,0,0,0,0,0,0,0,1.31577485171795,0.773494655682926,0,0,0,0,0,0,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.32520075409622,2.42091385753846,0,0,0.606351566874658,0,0,1.14498490124799,0.143444410785353,0,0,0,0,0,0,0,0,0,1.40891655513718,1.28227396921293 | |||
|short_description=p3@LTB | |||
}} |
Latest revision as of 21:55, 17 September 2015
Short description: | p3@LTB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LTB_5end |
Coexpression cluster: | C1103_CD19_CD4_CD8_Whole_blood_Burkitt_thymus |
Association with transcript: | 79bp_to_ENST00000482429_5end |
EntrezGene: | LTB |
HGNC: | 6711 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 1.26e-37 | 52 |
lymphocyte | 9.84e-37 | 53 |
common lymphoid progenitor | 9.84e-37 | 53 |
mature alpha-beta T cell | 3.97e-29 | 18 |
alpha-beta T cell | 3.97e-29 | 18 |
immature T cell | 3.97e-29 | 18 |
mature T cell | 3.97e-29 | 18 |
immature alpha-beta T cell | 3.97e-29 | 18 |
nongranular leukocyte | 8.45e-23 | 115 |
hematopoietic stem cell | 5.89e-20 | 168 |
leukocyte | 9.17e-20 | 136 |
T cell | 9.74e-20 | 25 |
pro-T cell | 9.74e-20 | 25 |
B cell | 1.07e-19 | 14 |
CD8-positive, alpha-beta T cell | 1.69e-19 | 11 |
lymphocyte of B lineage | 3.70e-19 | 24 |
pro-B cell | 3.70e-19 | 24 |
hematopoietic lineage restricted progenitor cell | 6.35e-19 | 120 |
hematopoietic cell | 2.76e-18 | 177 |
hematopoietic oligopotent progenitor cell | 3.69e-18 | 161 |
hematopoietic multipotent progenitor cell | 3.69e-18 | 161 |
CD4-positive, alpha-beta T cell | 2.81e-13 | 6 |
intermediate monocyte | 1.14e-09 | 9 |
CD14-positive, CD16-positive monocyte | 1.14e-09 | 9 |
non-classical monocyte | 1.51e-08 | 3 |
CD14-low, CD16-positive monocyte | 1.51e-08 | 3 |
naive T cell | 1.47e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 1.20e-16 | 15 |
haemolymphatic fluid | 1.20e-16 | 15 |
organism substance | 1.20e-16 | 15 |