FFCP PHASE1:Hg19::chr6:43138999..43139017,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6722 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11291 | |||
|TSSclassifier=strong | |||
|UniProt=P11831 | |||
|association_with_transcript=-19bp_to_ENST00000265354_5end | |||
|cluster_id=chr6:43138999..43139017,+ | |||
|description=CAGE_peak_2_at_SRF_5end | |||
|id=chr6:43138999..43139017,+ | |||
|ontology_enrichment_celltype=CL:0002057!5.72e-18!42;CL:0000860!6.84e-18!45;CL:0000738!9.42e-18!140;CL:0002009!1.42e-17!65;CL:0000766!2.42e-17!76;CL:0002194!7.38e-17!63;CL:0000576!7.38e-17!63;CL:0000040!7.38e-17!63;CL:0000559!7.38e-17!63;CL:0002087!6.70e-16!119;CL:0000557!1.08e-15!71;CL:0000839!4.90e-15!70;CL:0002031!6.88e-15!124;CL:0000037!4.39e-11!172;CL:0000566!4.39e-11!172;CL:0000988!1.39e-10!182;CL:0002032!3.68e-10!165;CL:0000837!3.68e-10!165;CL:0000763!5.55e-09!112;CL:0000049!5.55e-09!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.43e-17;33!CL:0002057;1.43e-17;33!CL:0000473;6.23e-16;39!CL:0000234;6.23e-16;39!CL:0000576;1.55e-10;48!CL:0000766;9.40e-09;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.63e-19,48;CL:0000234,1.63e-19,48;CL:0002009,1.70e-18,61;CL:0000738,4.04e-18,136;CL:0000766,4.18e-18,72;CL:0000860,5.71e-18,42;CL:0002057,5.71e-18,42;CL:0002194,9.02e-18,59;CL:0000576,9.02e-18,59;CL:0000040,9.02e-18,59;CL:0000559,9.02e-18,59;CL:0000557,1.97e-16,67;CL:0002087,2.68e-16,115;CL:0000839,9.46e-16,66;CL:0002031,3.05e-15,120;CL:0000037,2.90e-11,168;CL:0000988,1.31e-10,177;CL:0002032,2.48e-10,161;CL:0000837,2.48e-10,161;CL:0000763,3.16e-09,108;CL:0000049,3.16e-09,108 | |||
|ontology_enrichment_development_v019=CL:0002057;9.40e-14;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!6.64e-14!102;UBERON:0003061!6.64e-14!102;UBERON:0002371!1.45e-12!80;UBERON:0002193!3.42e-12!112;UBERON:0002405!8.12e-12!115;UBERON:0001474!1.56e-10!86;UBERON:0000062!2.34e-08!511;UBERON:0004765!6.41e-08!101;UBERON:0001434!6.41e-08!101;UBERON:0007023!7.06e-07!115;UBERON:0001557!8.46e-07!19 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.44e-14,98;UBERON:0003061,2.44e-14,98;UBERON:0002371,4.44e-13,76;UBERON:0002405,6.40e-13,93;UBERON:0002193,1.58e-12,108;UBERON:0001474,6.49e-11,82;UBERON:0004765,1.77e-08,90;UBERON:0001434,3.02e-07,100;UBERON:0001557,8.45e-07,19;UBERON:0003081,9.15e-07,203 | |||
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| |||
|short_description=p2@SRF | |||
}} |
Latest revision as of 21:35, 18 September 2015
Short description: | p2@SRF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SRF_5end |
Coexpression cluster: | NA |
Association with transcript: | -19bp_to_ENST00000265354_5end |
EntrezGene: | SRF |
HGNC: | 11291 |
UniProt: | P11831 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.63e-19 | 48 |
phagocyte | 1.63e-19 | 48 |
macrophage dendritic cell progenitor | 1.70e-18 | 61 |
leukocyte | 4.04e-18 | 136 |
myeloid leukocyte | 4.18e-18 | 72 |
classical monocyte | 5.71e-18 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.71e-18 | 42 |
monopoietic cell | 9.02e-18 | 59 |
monocyte | 9.02e-18 | 59 |
monoblast | 9.02e-18 | 59 |
promonocyte | 9.02e-18 | 59 |
granulocyte monocyte progenitor cell | 1.97e-16 | 67 |
nongranular leukocyte | 2.68e-16 | 115 |
myeloid lineage restricted progenitor cell | 9.46e-16 | 66 |
hematopoietic lineage restricted progenitor cell | 3.05e-15 | 120 |
hematopoietic stem cell | 2.90e-11 | 168 |
hematopoietic cell | 1.31e-10 | 177 |
hematopoietic oligopotent progenitor cell | 2.48e-10 | 161 |
hematopoietic multipotent progenitor cell | 2.48e-10 | 161 |
myeloid cell | 3.16e-09 | 108 |
common myeloid progenitor | 3.16e-09 | 108 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.44e-14 | 98 |
blood island | 2.44e-14 | 98 |
bone marrow | 4.44e-13 | 76 |
immune system | 6.40e-13 | 93 |
hemolymphoid system | 1.58e-12 | 108 |
bone element | 6.49e-11 | 82 |
skeletal element | 1.77e-08 | 90 |
skeletal system | 3.02e-07 | 100 |
upper respiratory tract | 8.45e-07 | 19 |
lateral plate mesoderm | 9.15e-07 | 203 |