FFCP PHASE1:Hg19::chr7:73868220..73868272,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9569 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4661 | |||
|TSSclassifier=strong | |||
|UniProt=Q6DSU6 | |||
|association_with_transcript=-27bp_to_ENST00000455841_5end | |||
|cluster_id=chr7:73868220..73868272,+ | |||
|description=CAGE_peak_1_at_GTF2IRD1_5end | |||
|id=chr7:73868220..73868272,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.13e-18!254;CL:0002321!4.59e-17!248;CL:0000220!2.52e-16!246;CL:0000221!3.11e-12!71;CL:0000133!5.89e-12!59;CL:0000223!7.33e-10!59;CL:0000333!8.62e-10!41;CL:0002076!4.24e-08!43 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.27e-18,253;CL:0002321,5.03e-17,250;CL:0000221,3.75e-12,72;CL:0000133,5.45e-12,59;CL:0000223,4.79e-10,58;CL:0000333,8.11e-10,41;CL:0002076,2.98e-08,42 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!5.02e-15!143;DOID:3095!2.86e-09!22;DOID:2994!2.86e-09!22;DOID:305!4.83e-09!106;DOID:162!5.32e-09!235;DOID:14566!1.53e-08!239 | |||
|ontology_enrichment_disease_v019=DOID:3095;2.32e-09;22!DOID:2994;2.32e-09;22 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,6.18e-15,143;DOID:3095,2.35e-09,22;DOID:2994,2.35e-09,22;DOID:162,5.21e-09,235;DOID:305,6.33e-09,106;DOID:14566,1.68e-08,239 | |||
|ontology_enrichment_uberon=UBERON:0000475!1.57e-12!365;UBERON:0000481!1.07e-11!347;UBERON:0000924!1.77e-10!173;UBERON:0006601!1.77e-10!173;UBERON:0004121!3.31e-09!169;UBERON:0001032!5.98e-09!24;UBERON:0004456!5.98e-09!24;UBERON:0000020!2.20e-08!23;UBERON:0001444!3.50e-08!48;UBERON:0000922!4.27e-08!612;UBERON:0004119!5.21e-08!169;UBERON:0000925!5.21e-08!169;UBERON:0006595!5.21e-08!169;UBERON:0002104!8.61e-08!21;UBERON:0000468!1.08e-07!659;UBERON:0000483!1.71e-07!309;UBERON:0000119!2.08e-07!312;UBERON:0000970!3.13e-07!20;UBERON:0003104!5.83e-07!238;UBERON:0009142!5.83e-07!238;UBERON:0000466!7.39e-07!126;UBERON:0004921!7.48e-07!129;UBERON:0004185!7.48e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0001032;7.04e-09;24!UBERON:0004456;7.04e-09;24!UBERON:0000020;2.65e-08;23!UBERON:0002104;1.05e-07;21!UBERON:0000970;3.90e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,8.19e-10,171;UBERON:0000924,8.19e-10,171;UBERON:0006601,8.19e-10,171;UBERON:0000020,5.67e-09,24;UBERON:0001032,5.67e-09,24;UBERON:0004456,5.67e-09,24;UBERON:0001444,1.14e-08,49;UBERON:0011216,1.44e-08,223;UBERON:0000033,3.14e-08,56;UBERON:0000970,8.23e-08,21;UBERON:0002104,8.23e-08,21;UBERON:0004119,1.08e-07,160;UBERON:0000925,1.08e-07,160;UBERON:0006595,1.08e-07,160;UBERON:0000483,2.93e-07,306;UBERON:0000019,3.02e-07,20;UBERON:0000047,3.02e-07,20;UBERON:0010312,3.02e-07,20;UBERON:0004088,3.02e-07,20;UBERON:0010230,3.02e-07,20;UBERON:0003072,3.02e-07,20;UBERON:0004128,3.02e-07,20;UBERON:0003071,3.02e-07,20;UBERON:0000119,3.56e-07,309;UBERON:0001456,4.16e-07,22;UBERON:0000922,5.01e-07,592 | |||
|phase1_expression=3.81524596468169,3.63970890614671,3.66481450649525,2.00146596706261,8.93922188854576,6.97870819280295,15.1979926900986,3.15859936713415,3.91778442299758,2.45733936501509,11.8626198555313,3.27662058195258,5.01157258634062,2.10402800032079,5.30235801164665,2.6893005858071,4.82155622419182,1.46062018077475,2.43966399395253,3.93987385845721,6.9360235023046,5.95563970808367,4.29353980696585,6.02247470320691,3.89182182743889,1.06978768047132,1.14940825229924,1.25937250101887,0.786728553697808,0,0.619264493264304,7.35536979583142,12.04823675113,12.9413903558376,3.64095842727418,0,0.880801318004542,0,0,0.434021741431704,4.03047853631864,2.26725566213286,5.15151135268373,0.290796477559129,3.40088349319928,0.485168122375632,0.697287110717054,4.93401465626191,2.47765096716083,0.575384784644301,0.512321413058201,0.47296445977717,0,1.29096936716765,2.70852973188684,1.69418105588344,2.18324920046277,0.674170453335254,1.22433556948361,4.17207735198922,0,0,0.797854630486527,0,0.290209238628584,0.56738522469114,0,0.502497330513487,1.0429658368404,1.08594422352558,1.81619850790011,0.368277635987565,0,0,0.212604299965044,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.764546456250458,0,1.68152568894461,0.790152254325231,0.590129310341499,0.786021525498329,0.822405995998037,0,0,0,0,0,0,0.221533894583621,0,0.384273959177026,0.260118695119756,0,0,0,0,0.267540828089713,0,0.226618685395132,0,0.34362744548263,0,0.318565414324097,0,0,0.301150238155546,0.127986611154418,0,0,0,0,0,0.144824403882799,7.31420598941885,1.34140171940727,2.81297636055767,5.06014813338393,7.01873074890245,7.9665585428453,3.9764297352555,10.705967146658,7.27918092163323,5.09977614163897,7.02678285545008,3.07800827419625,13.1146303785315,10.0111799551796,1.29818957461873,2.26368658489047,2.26028532882071,0.238490624305342,0.571994910780128,0,4.37277296206751,3.4409383804245,0.694281003215189,3.95715559346807,3.77549492588915,4.12677062910101,2.50793959844173,3.10100111003195,1.42306505074684,2.67776490211736,3.62546385398232,6.0821768457481,6.34561349625241,3.67663080345869,5.67099363517232,3.57198913136319,4.4905874525234,4.50445921933289,4.5994991239765,4.74632829784064,3.66403487860815,0,0,10.9023513035634,4.47274756525787,3.54565432660823,3.83986624358335,3.44203944898576,5.32002573297536,1.12135520028461,2.1349799145941,3.94668077467456,3.7345324247972,5.79255889899659,4.7403951902903,4.99479511228274,3.45705554687999,24.6037503425486,3.1216007683032,1.71141546463335,4.63290909710583,8.10298040641978,8.41739310714284,6.17983549489893,2.44985005505872,5.77321291365309,4.44300859055791,2.37600571456411,7.66527480763526,2.73048408581408,5.74894513452991,4.54507507675979,6.38104451347017,1.38532057742091,3.07284334616587,2.45190236639216,5.85928429735728,1.47461838108027,6.09924761342131,3.84403299873421,2.54318281391474,4.20127534518163,1.8549455262919,4.63752972082133,4.28068769562657,4.72573730275545,4.09235421677034,6.81571190459109,2.85354685791128,8.89053312503465,5.32514388774922,2.51880245569101,3.05209066158878,4.63826047591912,5.18217629122586,7.1701148847251,11.465528376182,13.650566137113,10.6898427439957,11.6100381617215,11.1021174385276,10.9493207722749,3.12899064659632,8.36213219650751,2.76269842704961,3.25057549622385,4.33127689001751,2.48444280083672,0.842923450390509,0.964044119533928,3.08823123650703,1.74303555273925,2.13543557199987,2.83145747136345,1.96221465125346,2.69323009862473,8.11971000087113,12.6217596423101,1.6462960453256,4.41026134156626,0,7.86261773342101,1.18157981336281,0,13.7747051168287,5.83330555014987,3.95101027471052,8.99214026060957,7.03702806881416,8.88849073521884,25.4130478142053,13.5191522086345,5.77325368101093,7.07175470347969,3.75707821554629,3.46479474626577,4.1668696131895,1.71228737011138,2.37061319387782,1.71697232418975,2.70838706696137,2.10603838625314,3.26988557035202,1.87467667973554,6.38332087155666,7.3723050566041,6.35865511190223,3.48760726216754,7.28427090413901,0,0,4.35389042635621,4.17947864909188,1.00993946741104,6.41328732350907,7.63976851116555,12.8939191931052,8.55362230113526,6.68378702571603,4.50514586765876,7.14566081576446,3.1396703616701,5.66748089483264,3.59357600522655,7.36848779819333,14.3062578340753,2.535908257668,2.92531928243358,2.08014873822732,5.14414748524284,4.25547396069835,7.19339883343468,4.86125178437702,17.3638913725262,13.1718453884923,1.62868092146868,7.46323092359346,6.33561498346743,4.22015127883421,7.84380112740265,4.79870357673874,4.86495122564762,1.00451418286425,2.10833939483032,2.87549826589899,3.44585807502342,15.690059554479,2.17171960001369,3.90405012845728,5.37182889719687,0,0.394061520403854,0,0.256686072559497,6.86055485400651,2.60279707715243,6.18631050222156,8.71084579738614,5.74144876487847,0,0,0,3.0672872929785,5.00170521059677,4.06897535549603,5.40724239980099,3.56857977594324,3.46945313074656,5.27136367467209,3.61135319673263,9.09630016223939,8.27784570340039,0.664225598535437,3.31864503375066,3.82287903659565,7.63624514104688,10.2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| |||
|short_description=p1@GTF2IRD1 | |||
}} |
Latest revision as of 11:37, 19 September 2015
Short description: | p1@GTF2IRD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GTF2IRD1_5end |
Coexpression cluster: | NA |
Association with transcript: | -27bp_to_ENST00000455841_5end |
EntrezGene: | GTF2IRD1 |
HGNC: | 4661 |
UniProt: | Q6DSU6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.27e-18 | 253 |
embryonic cell | 5.03e-17 | 250 |
ectodermal cell | 3.75e-12 | 72 |
neurectodermal cell | 5.45e-12 | 59 |
endodermal cell | 4.79e-10 | 58 |
migratory neural crest cell | 8.11e-10 | 41 |
endo-epithelial cell | 2.98e-08 | 42 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 8.19e-10 | 171 |
ectoderm | 8.19e-10 | 171 |
presumptive ectoderm | 8.19e-10 | 171 |
sense organ | 5.67e-09 | 24 |
sensory system | 5.67e-09 | 24 |
entire sense organ system | 5.67e-09 | 24 |
subdivision of head | 1.14e-08 | 49 |
organ system subdivision | 1.44e-08 | 223 |
head | 3.14e-08 | 56 |
eye | 8.23e-08 | 21 |
visual system | 8.23e-08 | 21 |
endoderm-derived structure | 1.08e-07 | 160 |
endoderm | 1.08e-07 | 160 |
presumptive endoderm | 1.08e-07 | 160 |
epithelium | 2.93e-07 | 306 |
camera-type eye | 3.02e-07 | 20 |
simple eye | 3.02e-07 | 20 |
immature eye | 3.02e-07 | 20 |
ocular region | 3.02e-07 | 20 |
eyeball of camera-type eye | 3.02e-07 | 20 |
optic cup | 3.02e-07 | 20 |
optic vesicle | 3.02e-07 | 20 |
eye primordium | 3.02e-07 | 20 |
cell layer | 3.56e-07 | 309 |
face | 4.16e-07 | 22 |
embryo | 5.01e-07 | 592 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 6.18e-15 | 143 |
germ cell and embryonal cancer | 2.35e-09 | 22 |
germ cell cancer | 2.35e-09 | 22 |
cancer | 5.21e-09 | 235 |
carcinoma | 6.33e-09 | 106 |
disease of cellular proliferation | 1.68e-08 | 239 |