FF:1035-18D5: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00005724 | ||
|accession_numbers=CAGE;DRX009094;DRR009968;DRZ001393;DRZ002776 | |accession_numbers=CAGE;DRX009094;DRR009968;DRZ001393;DRZ002776;DRZ012743;DRZ014126 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000945,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010039,UBERON:0010317,UBERON:0001555,UBERON:0005409,UBERON:0001041 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000945,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010039,UBERON:0010317,UBERON:0001555,UBERON:0005409,UBERON:0001041 | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr5:77543897..77543911,-!p2@Hopx!2.13!248.61!Hopx;;chr13:55932591..55932622,-!p1@Pitx1!2.04!130.68!Pitx1;;chr4:135129538..135129558,-!p1@Grhl3!1.88!110.19!Grhl3;;chr5:77543935..77543947,-!p4@Hopx!1.75!55.41!Hopx;;chr10:22539932..22539956,-!p1@Tcf21!1.66!115.83!Tcf21;;chr16:25801993..25802014,+!p1@Trp63!1.64!42.24!Trp63;;chr1:137155026..137155042,-!p1@Elf3!1.62!226.65!Elf3;;chr2:103143336..103143367,-!p1@Ehf!1.61!63.77!Ehf;;chr8:59799772..59799789,+!p1@Hand2!1.60!108.73!Hand2;;chr13:48758276..48758291,+!p1@Barx1!1.58!37.43!Barx1;;chr8:123608252..123608268,+!p1@Foxf1a!1.54!49.55!Foxf1a;;chr11:121380640..121380655,-!p1@Zfp750!1.52!52.06!Zfp750;;chr17:27865882..27865901,-!p1@Spdef!1.42!25.51!Spdef;;chr13:31650185..31650201,+!p1@Foxq1!1.41!84.47!Foxq1;;chr12:58646974..58647003,-!p1@Foxa1!1.41!33.04!Foxa1;;chr19:5560600..5560617,-!p1@Ovol1!1.40!29.06!Ovol1;;chr2:103264245..103264268,+!p2@Elf5!1.39!23.42!Elf5;;chr13:55937467..55937516,-!p3@Pitx1!1.38!23.21!Pitx1;;chr2:103143315..103143328,-!p2@Ehf!1.34!20.70!Ehf;;chr3:34548909..34548927,+!p1@Sox2!1.32!33.25!Sox2;;chr2:163332558..163332596,+!p2@Hnf4a!1.30!19.03!Hnf4a;;chr13:55932624..55932641,-!p2@Pitx1!1.30!18.82!Pitx1;;chr14:118636214..118636235,-!p1@Sox21!1.29!22.16!Sox21;;chr13:48758358..48758415,+!p2@Barx1!1.26!17.15!Barx1;;chr11:121380594..121380609,-!p2@Zfp750!1.21!26.14!Zfp750;;chr15:102865131..102865151,+!p2@Hoxc4!1.19!16.31!Hoxc4;;chr13:55937432..55937460,-!p4@Pitx1!1.18!14.22!Pitx1;;chr1:189821714..189821761,+!p1@Esrrg!1.17!25.72!Esrrg;;chr10:12810631..12810649,+!p1@Plagl1!1.14!333.08!Plagl1;;chr13:31717548..31717596,+!p1@Foxf2!1.14!25.51!Foxf2;;chr7:17647736..17647772,-!p1@Hif3a!1.12!42.86!Hif3a;;chr14:99697871..99697934,+!p1@Klf5!1.11!232.51!Klf5;;chr11:121380611..121380625,-!p3@Zfp750!1.10!14.01!Zfp750;;chr7:108966820..108966835,+!p1@Phox2a!1.08!11.08!Phox2a;;chr15:102865088..102865107,+!p1@Hoxc4!1.03!13.17!Hoxc4;;chr16:38294860..38294924,-!p1@Nr1i2!1.03!9.83!Nr1i2;;chr7:19608891..19608895,-!p1@Foxa3!1.02!12.34!Foxa3;;chr2:103264213..103264233,+!p1@Elf5!1.02!9.41!Elf5;;chr12:57796615..57796687,+!p1@Pax9!1.01!9.20!Pax9;;chr9:31720843..31720888,-!p1@Barx2!0.99!9.83!Barx2;;chr3:30408603..30408668,-!p1@Mecom!0.98!20.07!Mecom;;chr13:117099847..117099907,-!p1@Isl1!0.98!15.89!Isl1;;chr14:63864056..63864102,-!p1@Gata4!0.96!14.43!Gata4;;chr14:118636238..118636257,-!p2@Sox21!0.96!8.15!Sox21;;chr5:144951153..144951203,+!p1@Bhlha15!0.95!11.71!Bhlha15;;chr3:3508024..3508069,+!p2@Hnf4g!0.95!7.95!Hnf4g;;chr10:126778916..126778974,-!p1@Gli1!0.94!17.56!Gli1;;chr6:52163319..52163342,-!p1@Hoxa3!0.94!11.29!Hoxa3;;chr11:94981424..94981439,+!p1@Dlx3!0.94!8.78!Dlx3;;chr12:39510206..39510249,+!p3@Etv1!0.94!7.74!Etv1;;chr3:90046995..90047031,-!p2@Creb3l4!0.93!9.62!Creb3l4;;chr2:172375081..172375105,+!p1@Tfap2c!0.93!7.53!Tfap2c;;chr2:164228702..164228719,+!p1@Rbpjl!0.93!7.53!Rbpjl;;chr3:34548946..34548972,+!p2@Sox2!0.92!8.15!Sox2;;chr10:88969376..88969395,-!p1@Nr1h4!0.92!7.32!Nr1h4;;chr11:96880072..96880079,+!p1@Sp6!0.92!7.32!Sp6;;chr17:86087592..86087615,-!p1@Six2!0.92!7.32!Six2;;chr2:180069370..180069409,-!p1@Gata5!0.89!7.95!Gata5;;chr13:40829137..40829205,-!p1@Tfap2a!0.88!7.53!Tfap2a;;chr4:55545337..55545357,-!p1@Klf4!0.87!99.32!Klf4;;chr3:29911808..29911833,-!p8@Mecom!0.87!6.48!Mecom;;chr5:67490284..67490302,-!p1@Phox2b!0.87!6.48!Phox2b;;chr6:14851440..14851497,+!p2@Foxp2!0.86!15.89!Foxp2;;chr11:69468531..69468557,+!p1@Sox15!0.86!6.27!Sox15;;chr7:6649134..6649167,-!p1@Zim1!0.85!34.71!Zim1;;chr4:135129447..135129467,-!p2@Grhl3!0.85!7.53!Grhl3;;chr13:31650026..31650045,+!p2@Foxq1!0.84!10.25!Foxq1;;chr6:86619104..86619119,-!p1@Mxd1!0.83!50.60!Mxd1;;chr10:44178521..44178557,-!p1@Prdm1!0.82!10.45!Prdm1;;chr15:102839948..102839975,+!p3@Hoxc6!0.81!5.44!Hoxc6;;chr14:118635860..118635885,-!p3@Sox21!0.81!5.44!Sox21;;chr10:119913310..119913366,-!p1@Hmga2!0.80!44.54!Hmga2;;chr7:19946556..19946611,+!p1@Ppp1r13l!0.79!21.75!Ppp1r13l;;chr13:72766250..72766273,+!p1@Irx2!0.79!8.36!Irx2;;chr6:52167459..52167492,-!p1@Hoxa7!0.79!6.27!Hoxa7;;chr19:5560570..5560582,-!p2@Ovol1!0.79!5.23!Ovol1;;chr1:194979315..194979359,+!p1@Irf6!0.78!33.66!Irf6;;chr3:30408384..30408431,-!p4@Mecom!0.78!6.48!Mecom;;chr1:170361991..170362015,-!p6@Pbx1!0.77!11.71!Pbx1;;chr18:76219118..76219155,+!p1@Zbtb7c!0.77!8.99!Zbtb7c;;chr11:96153767..96153822,+!p1@Hoxb6!0.77!7.95!Hoxb6;;chr10:86956396..86956411,-!p1@Ascl1!0.76!7.74!Ascl1;;chr11:121381087..121381108,-!p4@Zfp750!0.76!4.81!Zfp750;;chr9:31720746..31720762,-!p4@Barx2!0.76!4.81!Barx2;;chr13:40826961..40827001,-!p4@Tfap2a!0.75!4.60!Tfap2a;;chr12:25257265..25257294,+!p2@Grhl1!0.75!4.60!Grhl1;;chr12:39507680..39507715,+!p2@Etv1!0.74!9.41!Etv1;;chr4:148178559..148178603,+!p1@Casz1!0.73!13.80!Casz1;;chr6:52114821..52114828,-!p1@Hoxa2!0.73!6.90!Hoxa2;;chr15:102844431..102844445,+!p1@Hoxc5!0.73!4.39!Hoxc5;;chr11:96213288..96213332,+!p@chr11:96213288..96213332,+!0.72!7.74!Hoxb2;;chr15:37162834..37162849,+!p2@Grhl2!0.72!5.23!Grhl2;;chr7:38554763..38554780,-!p1@Zfp536!0.71!7.95!Zfp536;;chr6:14851287..14851342,+!p1@Foxp2!0.70!14.64!Foxp2;;chr4:154010918..154010931,-!p1@Prdm16!0.70!12.96!Prdm16;;chr3:3634145..3634161,+!p1@Hnf4g!0.70!3.97!Hnf4g;;chr4:46356509..46356527,+!p1@Foxe1!0.70!3.97!Foxe1;;chr2:19367259..19367278,+!p1@Ptf1a!0.70!3.97!Ptf1a;;chr14:63890491..63890516,-!p2@Gata4!0.70!3.97!Gata4;;chr15:102839976..102839989,+!p4@Hoxc6!0.70!3.97!Hoxc6;;chr19:10315179..10315241,-!p1@Gm98!0.69!46.42!Gm98;;chr1:120879128..120879183,-!p3@Gli2!0.68!7.74!Gli2;;chr6:52154414..52154462,-!p1@Hoxa5!0.68!5.44!Hoxa5;;chr11:96143666..96143725,+!p1@Hoxb8!0.68!4.39!Hoxb8;;chr2:71367871..71367898,+!p1@Dlx1!0.68!3.76!Dlx1;;chr2:103252231..103252256,+!p4@Elf5!0.68!3.76!Elf5;;chr13:31717597..31717613,+!p2@Foxf2!0.68!3.76!Foxf2;;chr16:14705925..14705951,+!p1@Snai2!0.67!29.48!Snai2;;chr7:123182248..123182264,-!p3@Sox6!0.67!4.60!Sox6;;chr1:120524520..120524528,+!p1@Tfcp2l1!0.66!11.50!Tfcp2l1;;chr3:30408674..30408716,-!p2@Mecom!0.66!6.27!Mecom;;chr16:14705961..14705978,+!p2@Snai2!0.65!18.61!Snai2;;chr12:34642510..34642530,+!p1@Twist1!0.65!12.55!Twist1;;chr7:87170879..87170914,+!p2@Zfp710!0.65!8.99!Zfp710;;chr11:18918917..18918944,-!p1@Meis1!0.64!50.60!Meis1;;chr4:84320893..84320910,-!p1@Bnc2!0.64!8.36!Bnc2;;chr18:64499674..64499696,+!p1@Onecut2!0.64!6.27!Onecut2;;chr2:71384802..71384815,-!p1@Dlx2!0.64!4.39!Dlx2;;chr6:15135215..15135244,+!p11@Foxp2!0.64!3.35!Foxp2;;chr9:71743854..71743909,-!p1@Tcf12!0.63!30.32!Tcf12;;chr12:25257141..25257173,+!p1@Grhl1!0.63!7.53!Grhl1;;chr1:194979361..194979373,+!p2@Irf6!0.63!4.60!Irf6;;chr6:14851250..14851277,+!p4@Foxp2!0.63!4.39!Foxp2;;chr15:102087880..102087927,-!p2@Rarg!0.62!8.15!Rarg;;chr15:102865048..102865073,+!p3@Hoxc4!0.62!4.18!Hoxc4;;chr7:38554745..38554756,-!p7@Zfp536!0.62!3.14!Zfp536;;chr10:61595830..61595846,+!p1@Neurog3!0.62!3.14!Neurog3;;chr19:43686789..43686811,+!p1@Nkx2-3!0.62!3.14!Nkx2-3;;chr18:11052642..11052659,+!p1@Gata6!0.60!17.98!Gata6;;chr15:37162796..37162828,+!p1@Grhl2!0.60!5.44!Grhl2;;chr6:52154386..52154407,-!p2@Hoxa5!0.60!3.97!Hoxa5;;chr11:18918959..18918976,-!p2@Meis1!0.59!48.09!Meis1;;chr11:78200071..78200100,-!p1@Foxn1!0.59!2.93!Foxn1;;chr11:96164821..96164865,+!p1@Hoxb5!0.59!2.93!Hoxb5;;chr2:103264277..103264292,+!p3@Elf5!0.59!2.93!Elf5;;chr5:42155788..42155800,-!p1@Nkx3-2!0.59!2.93!Nkx3-2;;chr5:29805118..29805137,-!p1@Mnx1!0.59!2.93!Mnx1;;chr7:123182318..123182332,-!p11@Sox6!0.59!2.93!Sox6;;chr2:71367142..71367167,+!p2@Dlx1!0.59!2.93!Dlx1;;chr14:63890519..63890539,-!p3@Gata4!0.59!2.93!Gata4;;chr2:115891534..115891589,-!p1@Meis2!0.58!48.30!Meis2;;chr14:17407549..17407575,-!p3@Rarb!0.58!4.60!Rarb;;chrX:45245679..45245702,-!p1@Smarca1!0.57!14.64!Smarca1;;chr4:124805061..124805087,-!p1@Zc3h12a!0.57!10.04!Zc3h12a;;chr17:32506357..32506377,-!p3@Wiz!0.57!6.48!Wiz;;chr4:87452180..87452196,-!p3@Mllt3!0.57!6.06!Mllt3;;chr13:72766279..72766296,+!p2@Irx2!0.57!4.39!Irx2;;chr10:44178375..44178390,-!p2@Prdm1!0.57!3.97!Prdm1;;chr18:76219161..76219176,+!p4@Zbtb7c!0.57!3.76!Zbtb7c;;chr13:40825465..40825469,-!p2@Tfap2a!0.57!2.72!Tfap2a;;chr1:194979383..194979393,+!p3@Irf6!0.57!2.72!Irf6;;chr5:148081686..148081715,+!p1@Pdx1!0.57!2.72!Pdx1;;chr11:85646303..85646329,+!p1@Tbx2!0.56!21.33!Tbx2;;chr2:133377954..133377973,+!p1@Bmp2!0.56!10.04!Bmp2;;chr7:17642018..17642045,-!p4@Hif3a!0.56!3.14!Hif3a;;chr14:56443806..56443848,+!p1@Nfatc4!0.55!5.85!Nfatc4;;chr13:48758431..48758443,+!p3@Barx1!0.55!2.51!Barx1;;chr5:148118639..148118715,-!p1@Cdx2!0.55!2.51!Cdx2;;chr4:87452200..87452229,-!p2@Mllt3!0.54!6.06!Mllt3;;chr11:18918820..18918831,-!p4@Meis1!0.54!5.44!Meis1;;chr10:80599248..80599261,+!p3@Zbtb7a!0.54!5.02!Zbtb7a;;chr10:44178493..44178520,-!p3@Prdm1!0.54!3.76!Prdm1;;chr10:119913839..119913869,-!p7@Hmga2!0.54!3.35!Hmga2;;chr12:25257176..25257190,+!p3@Grhl1!0.54!2.93!Grhl1;;chr4:3865501..3865548,-!p1@Plag1!0.53!15.47!Plag1;;chr2:91864300..91864379,-!p2@Creb3l1!0.53!8.36!Creb3l1;;chr12:9581262..9581282,+!p1@Osr1!0.52!35.75!Osr1;;chr10:119913546..119913583,-!p3@Hmga2!0.52!5.65!Hmga2;;chr6:14851377..14851396,+!p10@Foxp2!0.52!2.30!Foxp2;;chr2:103123925..103123959,-!p3@Ehf!0.52!2.30!Ehf;;chr2:147871627..147871641,-!p1@Foxa2!0.52!2.30!Foxa2;;chr1:189821700..189821713,+!p4@Esrrg!0.52!2.30!Esrrg;;chr17:28409136..28409150,+!p3@Ppard!0.52!2.30!Ppard;;chr4:148275237..148275311,+!p2@Casz1!0.51!11.71!Casz1;;chr2:104966766..104966786,+!p1@Wt1!0.51!3.97!Wt1;;chr11:96145450..96145517,+!p2@Hoxb7!0.51!3.76!Hoxb7;;chr7:20162663..20162678,+!p1@Zfp296!0.50!3.14!Zfp296;;chr11:96147952..96147967,+!p1@Hoxb7!0.50!2.93!Hoxb7;;chr5:32438894..32438908,+!p2@Fosl2!0.49!5.23!Fosl2;;chr11:18918434..18918489,-!p3@Meis1!0.49!3.76!Meis1;;chr9:31720903..31720918,-!p2@Barx2!0.49!2.09!Barx2;;chr8:123651727..123651748,+!p1@ENSMUST00000062634!0.49!2.09!Foxl1;;chr13:48758328..48758335,+!p4@Barx1!0.49!2.09!Barx1;;chr15:102820964..102821006,+!p1@Hoxc8!0.49!2.09!Hoxc8;;chr15:102821007..102821021,+!p2@Hoxc8!0.49!2.09!Hoxc8;;chr14:63890459..63890484,-!p4@Gata4!0.49!2.09!Gata4;;chr13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| |expression_enrichment_score=chr5:77543897..77543911,-!p2@Hopx!2.13!248.61!Hopx;;chr13:55932591..55932622,-!p1@Pitx1!2.04!130.68!Pitx1;;chr4:135129538..135129558,-!p1@Grhl3!1.88!110.19!Grhl3;;chr5:77543935..77543947,-!p4@Hopx!1.75!55.41!Hopx;;chr10:22539932..22539956,-!p1@Tcf21!1.66!115.83!Tcf21;;chr16:25801993..25802014,+!p1@Trp63!1.64!42.24!Trp63;;chr1:137155026..137155042,-!p1@Elf3!1.62!226.65!Elf3;;chr2:103143336..103143367,-!p1@Ehf!1.61!63.77!Ehf;;chr8:59799772..59799789,+!p1@Hand2!1.60!108.73!Hand2;;chr13:48758276..48758291,+!p1@Barx1!1.58!37.43!Barx1;;chr8:123608252..123608268,+!p1@Foxf1a!1.54!49.55!Foxf1a;;chr11:121380640..121380655,-!p1@Zfp750!1.52!52.06!Zfp750;;chr17:27865882..27865901,-!p1@Spdef!1.42!25.51!Spdef;;chr13:31650185..31650201,+!p1@Foxq1!1.41!84.47!Foxq1;;chr12:58646974..58647003,-!p1@Foxa1!1.41!33.04!Foxa1;;chr19:5560600..5560617,-!p1@Ovol1!1.40!29.06!Ovol1;;chr2:103264245..103264268,+!p2@Elf5!1.39!23.42!Elf5;;chr13:55937467..55937516,-!p3@Pitx1!1.38!23.21!Pitx1;;chr2:103143315..103143328,-!p2@Ehf!1.34!20.70!Ehf;;chr3:34548909..34548927,+!p1@Sox2!1.32!33.25!Sox2;;chr2:163332558..163332596,+!p2@Hnf4a!1.30!19.03!Hnf4a;;chr13:55932624..55932641,-!p2@Pitx1!1.30!18.82!Pitx1;;chr14:118636214..118636235,-!p1@Sox21!1.29!22.16!Sox21;;chr13:48758358..48758415,+!p2@Barx1!1.26!17.15!Barx1;;chr11:121380594..121380609,-!p2@Zfp750!1.21!26.14!Zfp750;;chr15:102865131..102865151,+!p2@Hoxc4!1.19!16.31!Hoxc4;;chr13:55937432..55937460,-!p4@Pitx1!1.18!14.22!Pitx1;;chr1:189821714..189821761,+!p1@Esrrg!1.17!25.72!Esrrg;;chr10:12810631..12810649,+!p1@Plagl1!1.14!333.08!Plagl1;;chr13:31717548..31717596,+!p1@Foxf2!1.14!25.51!Foxf2;;chr7:17647736..17647772,-!p1@Hif3a!1.12!42.86!Hif3a;;chr14:99697871..99697934,+!p1@Klf5!1.11!232.51!Klf5;;chr11:121380611..121380625,-!p3@Zfp750!1.10!14.01!Zfp750;;chr7:108966820..108966835,+!p1@Phox2a!1.08!11.08!Phox2a;;chr15:102865088..102865107,+!p1@Hoxc4!1.03!13.17!Hoxc4;;chr16:38294860..38294924,-!p1@Nr1i2!1.03!9.83!Nr1i2;;chr7:19608891..19608895,-!p1@Foxa3!1.02!12.34!Foxa3;;chr2:103264213..103264233,+!p1@Elf5!1.02!9.41!Elf5;;chr12:57796615..57796687,+!p1@Pax9!1.01!9.20!Pax9;;chr9:31720843..31720888,-!p1@Barx2!0.99!9.83!Barx2;;chr3:30408603..30408668,-!p1@Mecom!0.98!20.07!Mecom;;chr13:117099847..117099907,-!p1@Isl1!0.98!15.89!Isl1;;chr14:63864056..63864102,-!p1@Gata4!0.96!14.43!Gata4;;chr14:118636238..118636257,-!p2@Sox21!0.96!8.15!Sox21;;chr5:144951153..144951203,+!p1@Bhlha15!0.95!11.71!Bhlha15;;chr3:3508024..3508069,+!p2@Hnf4g!0.95!7.95!Hnf4g;;chr10:126778916..126778974,-!p1@Gli1!0.94!17.56!Gli1;;chr6:52163319..52163342,-!p1@Hoxa3!0.94!11.29!Hoxa3;;chr11:94981424..94981439,+!p1@Dlx3!0.94!8.78!Dlx3;;chr12:39510206..39510249,+!p3@Etv1!0.94!7.74!Etv1;;chr3:90046995..90047031,-!p2@Creb3l4!0.93!9.62!Creb3l4;;chr2:172375081..172375105,+!p1@Tfap2c!0.93!7.53!Tfap2c;;chr2:164228702..164228719,+!p1@Rbpjl!0.93!7.53!Rbpjl;;chr3:34548946..34548972,+!p2@Sox2!0.92!8.15!Sox2;;chr10:88969376..88969395,-!p1@Nr1h4!0.92!7.32!Nr1h4;;chr11:96880072..96880079,+!p1@Sp6!0.92!7.32!Sp6;;chr17:86087592..86087615,-!p1@Six2!0.92!7.32!Six2;;chr2:180069370..180069409,-!p1@Gata5!0.89!7.95!Gata5;;chr13:40829137..40829205,-!p1@Tfap2a!0.88!7.53!Tfap2a;;chr4:55545337..55545357,-!p1@Klf4!0.87!99.32!Klf4;;chr3:29911808..29911833,-!p8@Mecom!0.87!6.48!Mecom;;chr5:67490284..67490302,-!p1@Phox2b!0.87!6.48!Phox2b;;chr6:14851440..14851497,+!p2@Foxp2!0.86!15.89!Foxp2;;chr11:69468531..69468557,+!p1@Sox15!0.86!6.27!Sox15;;chr7:6649134..6649167,-!p1@Zim1!0.85!34.71!Zim1;;chr4:135129447..135129467,-!p2@Grhl3!0.85!7.53!Grhl3;;chr13:31650026..31650045,+!p2@Foxq1!0.84!10.25!Foxq1;;chr6:86619104..86619119,-!p1@Mxd1!0.83!50.60!Mxd1;;chr10:44178521..44178557,-!p1@Prdm1!0.82!10.45!Prdm1;;chr15:102839948..102839975,+!p3@Hoxc6!0.81!5.44!Hoxc6;;chr14:118635860..118635885,-!p3@Sox21!0.81!5.44!Sox21;;chr10:119913310..119913366,-!p1@Hmga2!0.80!44.54!Hmga2;;chr7:19946556..19946611,+!p1@Ppp1r13l!0.79!21.75!Ppp1r13l;;chr13:72766250..72766273,+!p1@Irx2!0.79!8.36!Irx2;;chr6:52167459..52167492,-!p1@Hoxa7!0.79!6.27!Hoxa7;;chr19:5560570..5560582,-!p2@Ovol1!0.79!5.23!Ovol1;;chr1:194979315..194979359,+!p1@Irf6!0.78!33.66!Irf6;;chr3:30408384..30408431,-!p4@Mecom!0.78!6.48!Mecom;;chr1:170361991..170362015,-!p6@Pbx1!0.77!11.71!Pbx1;;chr18:76219118..76219155,+!p1@Zbtb7c!0.77!8.99!Zbtb7c;;chr11:96153767..96153822,+!p1@Hoxb6!0.77!7.95!Hoxb6;;chr10:86956396..86956411,-!p1@Ascl1!0.76!7.74!Ascl1;;chr11:121381087..121381108,-!p4@Zfp750!0.76!4.81!Zfp750;;chr9:31720746..31720762,-!p4@Barx2!0.76!4.81!Barx2;;chr13:40826961..40827001,-!p4@Tfap2a!0.75!4.60!Tfap2a;;chr12:25257265..25257294,+!p2@Grhl1!0.75!4.60!Grhl1;;chr12:39507680..39507715,+!p2@Etv1!0.74!9.41!Etv1;;chr4:148178559..148178603,+!p1@Casz1!0.73!13.80!Casz1;;chr6:52114821..52114828,-!p1@Hoxa2!0.73!6.90!Hoxa2;;chr15:102844431..102844445,+!p1@Hoxc5!0.73!4.39!Hoxc5;;chr11:96213288..96213332,+!p@chr11:96213288..96213332,+!0.72!7.74!Hoxb2;;chr15:37162834..37162849,+!p2@Grhl2!0.72!5.23!Grhl2;;chr7:38554763..38554780,-!p1@Zfp536!0.71!7.95!Zfp536;;chr6:14851287..14851342,+!p1@Foxp2!0.70!14.64!Foxp2;;chr4:154010918..154010931,-!p1@Prdm16!0.70!12.96!Prdm16;;chr3:3634145..3634161,+!p1@Hnf4g!0.70!3.97!Hnf4g;;chr4:46356509..46356527,+!p1@Foxe1!0.70!3.97!Foxe1;;chr2:19367259..19367278,+!p1@Ptf1a!0.70!3.97!Ptf1a;;chr14:63890491..63890516,-!p2@Gata4!0.70!3.97!Gata4;;chr15:102839976..102839989,+!p4@Hoxc6!0.70!3.97!Hoxc6;;chr19:10315179..10315241,-!p1@Gm98!0.69!46.42!Gm98;;chr1:120879128..120879183,-!p3@Gli2!0.68!7.74!Gli2;;chr6:52154414..52154462,-!p1@Hoxa5!0.68!5.44!Hoxa5;;chr11:96143666..96143725,+!p1@Hoxb8!0.68!4.39!Hoxb8;;chr2:71367871..71367898,+!p1@Dlx1!0.68!3.76!Dlx1;;chr2:103252231..103252256,+!p4@Elf5!0.68!3.76!Elf5;;chr13:31717597..31717613,+!p2@Foxf2!0.68!3.76!Foxf2;;chr16:14705925..14705951,+!p1@Snai2!0.67!29.48!Snai2;;chr7:123182248..123182264,-!p3@Sox6!0.67!4.60!Sox6;;chr1:120524520..120524528,+!p1@Tfcp2l1!0.66!11.50!Tfcp2l1;;chr3:30408674..30408716,-!p2@Mecom!0.66!6.27!Mecom;;chr16:14705961..14705978,+!p2@Snai2!0.65!18.61!Snai2;;chr12:34642510..34642530,+!p1@Twist1!0.65!12.55!Twist1;;chr7:87170879..87170914,+!p2@Zfp710!0.65!8.99!Zfp710;;chr11:18918917..18918944,-!p1@Meis1!0.64!50.60!Meis1;;chr4:84320893..84320910,-!p1@Bnc2!0.64!8.36!Bnc2;;chr18:64499674..64499696,+!p1@Onecut2!0.64!6.27!Onecut2;;chr2:71384802..71384815,-!p1@Dlx2!0.64!4.39!Dlx2;;chr6:15135215..15135244,+!p11@Foxp2!0.64!3.35!Foxp2;;chr9:71743854..71743909,-!p1@Tcf12!0.63!30.32!Tcf12;;chr12:25257141..25257173,+!p1@Grhl1!0.63!7.53!Grhl1;;chr1:194979361..194979373,+!p2@Irf6!0.63!4.60!Irf6;;chr6:14851250..14851277,+!p4@Foxp2!0.63!4.39!Foxp2;;chr15:102087880..102087927,-!p2@Rarg!0.62!8.15!Rarg;;chr15:102865048..102865073,+!p3@Hoxc4!0.62!4.18!Hoxc4;;chr7:38554745..38554756,-!p7@Zfp536!0.62!3.14!Zfp536;;chr10:61595830..61595846,+!p1@Neurog3!0.62!3.14!Neurog3;;chr19:43686789..43686811,+!p1@Nkx2-3!0.62!3.14!Nkx2-3;;chr18:11052642..11052659,+!p1@Gata6!0.60!17.98!Gata6;;chr15:37162796..37162828,+!p1@Grhl2!0.60!5.44!Grhl2;;chr6:52154386..52154407,-!p2@Hoxa5!0.60!3.97!Hoxa5;;chr11:18918959..18918976,-!p2@Meis1!0.59!48.09!Meis1;;chr11:78200071..78200100,-!p1@Foxn1!0.59!2.93!Foxn1;;chr11:96164821..96164865,+!p1@Hoxb5!0.59!2.93!Hoxb5;;chr2:103264277..103264292,+!p3@Elf5!0.59!2.93!Elf5;;chr5:42155788..42155800,-!p1@Nkx3-2!0.59!2.93!Nkx3-2;;chr5:29805118..29805137,-!p1@Mnx1!0.59!2.93!Mnx1;;chr7:123182318..123182332,-!p11@Sox6!0.59!2.93!Sox6;;chr2:71367142..71367167,+!p2@Dlx1!0.59!2.93!Dlx1;;chr14:63890519..63890539,-!p3@Gata4!0.59!2.93!Gata4;;chr2:115891534..115891589,-!p1@Meis2!0.58!48.30!Meis2;;chr14:17407549..17407575,-!p3@Rarb!0.58!4.60!Rarb;;chrX:45245679..45245702,-!p1@Smarca1!0.57!14.64!Smarca1;;chr4:124805061..124805087,-!p1@Zc3h12a!0.57!10.04!Zc3h12a;;chr17:32506357..32506377,-!p3@Wiz!0.57!6.48!Wiz;;chr4:87452180..87452196,-!p3@Mllt3!0.57!6.06!Mllt3;;chr13:72766279..72766296,+!p2@Irx2!0.57!4.39!Irx2;;chr10:44178375..44178390,-!p2@Prdm1!0.57!3.97!Prdm1;;chr18:76219161..76219176,+!p4@Zbtb7c!0.57!3.76!Zbtb7c;;chr13:40825465..40825469,-!p2@Tfap2a!0.57!2.72!Tfap2a;;chr1:194979383..194979393,+!p3@Irf6!0.57!2.72!Irf6;;chr5:148081686..148081715,+!p1@Pdx1!0.57!2.72!Pdx1;;chr11:85646303..85646329,+!p1@Tbx2!0.56!21.33!Tbx2;;chr2:133377954..133377973,+!p1@Bmp2!0.56!10.04!Bmp2;;chr7:17642018..17642045,-!p4@Hif3a!0.56!3.14!Hif3a;;chr14:56443806..56443848,+!p1@Nfatc4!0.55!5.85!Nfatc4;;chr13:48758431..48758443,+!p3@Barx1!0.55!2.51!Barx1;;chr5:148118639..148118715,-!p1@Cdx2!0.55!2.51!Cdx2;;chr4:87452200..87452229,-!p2@Mllt3!0.54!6.06!Mllt3;;chr11:18918820..18918831,-!p4@Meis1!0.54!5.44!Meis1;;chr10:80599248..80599261,+!p3@Zbtb7a!0.54!5.02!Zbtb7a;;chr10:44178493..44178520,-!p3@Prdm1!0.54!3.76!Prdm1;;chr10:119913839..119913869,-!p7@Hmga2!0.54!3.35!Hmga2;;chr12:25257176..25257190,+!p3@Grhl1!0.54!2.93!Grhl1;;chr4:3865501..3865548,-!p1@Plag1!0.53!15.47!Plag1;;chr2:91864300..91864379,-!p2@Creb3l1!0.53!8.36!Creb3l1;;chr12:9581262..9581282,+!p1@Osr1!0.52!35.75!Osr1;;chr10:119913546..119913583,-!p3@Hmga2!0.52!5.65!Hmga2;;chr6:14851377..14851396,+!p10@Foxp2!0.52!2.30!Foxp2;;chr2:103123925..103123959,-!p3@Ehf!0.52!2.30!Ehf;;chr2:147871627..147871641,-!p1@Foxa2!0.52!2.30!Foxa2;;chr1:189821700..189821713,+!p4@Esrrg!0.52!2.30!Esrrg;;chr17:28409136..28409150,+!p3@Ppard!0.52!2.30!Ppard;;chr4:148275237..148275311,+!p2@Casz1!0.51!11.71!Casz1;;chr2:104966766..104966786,+!p1@Wt1!0.51!3.97!Wt1;;chr11:96145450..96145517,+!p2@Hoxb7!0.51!3.76!Hoxb7;;chr7:20162663..20162678,+!p1@Zfp296!0.50!3.14!Zfp296;;chr11:96147952..96147967,+!p1@Hoxb7!0.50!2.93!Hoxb7;;chr5:32438894..32438908,+!p2@Fosl2!0.49!5.23!Fosl2;;chr11:18918434..18918489,-!p3@Meis1!0.49!3.76!Meis1;;chr9:31720903..31720918,-!p2@Barx2!0.49!2.09!Barx2;;chr8:123651727..123651748,+!p1@ENSMUST00000062634!0.49!2.09!Foxl1;;chr13:48758328..48758335,+!p4@Barx1!0.49!2.09!Barx1;;chr15:102820964..102821006,+!p1@Hoxc8!0.49!2.09!Hoxc8;;chr15:102821007..102821021,+!p2@Hoxc8!0.49!2.09!Hoxc8;;chr14:63890459..63890484,-!p4@Gata4!0.49!2.09!Gata4;;chr13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| ||
Line 44: | Line 45: | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11006 | |library_id=CNhs11006 | ||
| | |library_id_phase_based=2:CNhs11006 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;1035 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;1035 | |||
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/stomach%252c%2520embryo%2520E17.CNhs11006.1035-18D5.mm10.nobarcode.bam | |||
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/stomach%252c%2520embryo%2520E17.CNhs11006.1035-18D5.mm10.nobarcode.ctss.bed.gz | |||
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/stomach%252c%2520embryo%2520E17.CNhs11006.1035-18D5.mm9.nobarcode.bam | |||
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/stomach%252c%2520embryo%2520E17.CNhs11006.1035-18D5.mm9.ctss.bed.gz | |||
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/stomach%252c%2520embryo%2520E17.CNhs11006.1035-18D5.mm9.nobarcode.rdna.fa.gz | |||
|name=stomach, embryo E17 | |name=stomach, embryo E17 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 50: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11006,LSID730,release008,COMPLETED | |profile_hcage=CNhs11006,LSID730,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|repeat_enrich_byfamily=0.167367731177939,0,0,0,0,0,0.320803751709188,0,0.0824580172145032,0,0,1.08591741417509,0,0,0,0,0,0,0.326616806163243,0,0,0,0,0,0,0,0.012717780615956,0,0,0,0,0,0.303269828250157,0,0.0824580172145032,0,0.151730312771305,0.0121213886627577,0.0921930919455012,0.0601722947155985,0.0345296691353794,0.773524308926578,0.324218378116369,0,0,0,0,0,0,0,0,0,0,0,0.151730312771305,0.0857247652078642,0,0,0,0,0.0396110621316284,0,0,0.0824580172145032,0,0.067391072374763,0.146777833772215,0.116300591087257,0.301571990121831,0.111705460871523,0,0.0824580172145032,0.00216198949518187,-0.026341265574037,0.211458253644874,0,0.0387331334221735,-0.0257027667601126,-0.20434149950279,0.185124617502552,0,0,0,0,0,0,-0.0242031415100821,0.164688854527704,0.0387030916929946,0.0300624688890411,0,0,0,0 | |repeat_enrich_byfamily=0.167367731177939,0,0,0,0,0,0.320803751709188,0,0.0824580172145032,0,0,1.08591741417509,0,0,0,0,0,0,0.326616806163243,0,0,0,0,0,0,0,0.012717780615956,0,0,0,0,0,0.303269828250157,0,0.0824580172145032,0,0.151730312771305,0.0121213886627577,0.0921930919455012,0.0601722947155985,0.0345296691353794,0.773524308926578,0.324218378116369,0,0,0,0,0,0,0,0,0,0,0,0.151730312771305,0.0857247652078642,0,0,0,0,0.0396110621316284,0,0,0.0824580172145032,0,0.067391072374763,0.146777833772215,0.116300591087257,0.301571990121831,0.111705460871523,0,0.0824580172145032,0.00216198949518187,-0.026341265574037,0.211458253644874,0,0.0387331334221735,-0.0257027667601126,-0.20434149950279,0.185124617502552,0,0,0,0,0,0,-0.0242031415100821,0.164688854527704,0.0387030916929946,0.0300624688890411,0,0,0,0 | ||
Line 87: | Line 97: | ||
|top_motifs=ZNF148:2.49311642196;T:2.38684301189;CDC5L:2.09414826195;HMX1:1.92659985078;NKX3-1:1.82937013253;IKZF2:1.75128802871;MYBL2:1.58126467378;TOPORS:1.53314981946;FOS_FOS{B,L1}_JUN{B,D}:1.46846555309;ZNF384:1.40731703063;SRF:1.35166731156;DBP:1.2806304692;SNAI1..3:1.22472394014;FOX{I1,J2}:1.19520151334;FOXP1:1.1725417699;HAND1,2:1.10202691479;NR3C1:1.0876389595;GFI1:1.06296063683;TBP:1.0232607681;ADNP_IRX_SIX_ZHX:0.990270249277;TP53:0.981571225289;NKX6-1,2:0.954083762958;TFCP2:0.945873038072;XCPE1{core}:0.887729892855;ZNF238:0.867396031316;HMGA1,2:0.865526359618;TBX4,5:0.858994859307;NKX2-1,4:0.839176748706;CRX:0.825651044689;NKX3-2:0.806523374969;GTF2I:0.798446709235;GATA4:0.792600335926;POU5F1:0.79235528504;SOX5:0.780638809725;EBF1:0.761848425236;TLX2:0.733065520893;NANOG:0.705141041067;PITX1..3:0.701445154311;PAX4:0.700972187606;HOX{A5,B5}:0.667653309385;ZIC1..3:0.666838367784;RXRA_VDR{dimer}:0.659994516587;ZNF423:0.65966815061;TEAD1:0.652900681411;FOX{D1,D2}:0.65279636336;IKZF1:0.65145184546;KLF4:0.626865533162;GLI1..3:0.614872632058;TLX1..3_NFIC{dimer}:0.575127628542;EVI1:0.563120598994;TEF:0.547631449785;MAZ:0.546379219826;BACH2:0.531047295821;FOXA2:0.507889998066;SP1:0.491042653809;EN1,2:0.488968745928;MYOD1:0.476619067289;CDX1,2,4:0.475148561184;LEF1_TCF7_TCF7L1,2:0.45152691975;BPTF:0.429448903038;RBPJ:0.426331594133;PRDM1:0.390767484849;GCM1,2:0.381904566683;PAX1,9:0.381326168334;RREB1:0.377698178094;GFI1B:0.376748883089;ZEB1:0.37367976932;ZBTB16:0.365628298979;FOX{F1,F2,J1}:0.364570977567;E2F1..5:0.354208510418;VSX1,2:0.35181482848;HNF1A:0.345823090127;FOXO1,3,4:0.342804226556;FOXM1:0.327818125751;ONECUT1,2:0.292626786995;NFIX:0.286165010586;FOSL2:0.265549436348;GATA6:0.245644359052;GTF2A1,2:0.218182381173;NKX2-2,8:0.216439168826;EP300:0.208176241093;AR:0.200823849358;PATZ1:0.183702024428;POU1F1:0.163894184343;FOXN1:0.155930694419;BREu{core}:0.151370627682;PPARG:0.111820491852;HNF4A_NR2F1,2:0.102428096869;NFY{A,B,C}:0.0998590485706;ATF2:0.0910258551756;TFAP2{A,C}:0.0895188387084;PAX5:0.0811786434187;IRF7:0.0779089868823;POU6F1:0.0731717452305;PRRX1,2:0.073171531473;GZF1:0.0702310167903;NFE2:0.0625603234815;AIRE:0.0301371355208;ARID5B:0.0258496622808;TFAP4:0.0130778435041;STAT1,3:-0.00767663063236;MZF1:-0.0183637164163;HBP1_HMGB_SSRP1_UBTF:-0.0221097516244;NKX2-3_NKX2-5:-0.0502537738928;NFATC1..3:-0.0565675862252;SPZ1:-0.073061139435;HIC1:-0.0742444165726;LMO2:-0.0797190080031;SOX{8,9,10}:-0.0806039524473;REST:-0.0915750794619;MYFfamily:-0.105073916877;ESRRA:-0.107465351483;UFEwm:-0.120921094176;SMAD1..7,9:-0.125100403091;NFE2L2:-0.13441972418;ZNF143:-0.135078005248;RFX2..5_RFXANK_RFXAP:-0.148982652965;ETS1,2:-0.152333490384;ELF1,2,4:-0.156035081135;TGIF1:-0.156398495404;MED-1{core}:-0.157488024826;DMAP1_NCOR{1,2}_SMARC:-0.163384510412;HIF1A:-0.172085837415;ATF6:-0.17959763011;EGR1..3:-0.180177587057;PAX8:-0.187971261518;TAL1_TCF{3,4,12}:-0.191104956546;SOX2:-0.191486349673;LHX3,4:-0.196968082064;HSF1,2:-0.209055248464;POU3F1..4:-0.209588147682;ESR1:-0.234487981404;TFDP1:-0.237645397693;SOX17:-0.251675792377;TFAP2B:-0.261869530474;AHR_ARNT_ARNT2:-0.26395198498;MAFB:-0.288680974234;FOXD3:-0.299241609181;HOX{A4,D4}:-0.332253997202;CEBPA,B_DDIT3:-0.335044300313;HOXA9_MEIS1:-0.348821292119;IRF1,2:-0.350541368736;SPIB:-0.37589192806;CUX2:-0.421683418648;MEF2{A,B,C,D}:-0.424753863866;HLF:-0.437505953394;FOXL1:-0.452961907716;POU2F1..3:-0.455753908626;PAX6:-0.460449271137;OCT4_SOX2{dimer}:-0.462354332349;RFX1:-0.471614933866;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.498224877718;NRF1:-0.51028537734;MYB:-0.511480944564;CREB1:-0.516909704243;ZFP161:-0.54201409861;ELK1,4_GABP{A,B1}:-0.555169064553;NFKB1_REL_RELA:-0.558132091999;NR6A1:-0.580810638479;ALX4:-0.632811479199;SPI1:-0.636038151096;ZBTB6:-0.637907979202;PDX1:-0.643795069689;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.664212240034;RUNX1..3:-0.669922631061;RXR{A,B,G}:-0.706701177998;bHLH_family:-0.722354334927;JUN:-0.740974623987;PBX1:-0.746789143347;MTF1:-0.760098092964;ALX1:-0.799820966983;NANOG{mouse}:-0.879967827091;MTE{core}:-0.891243180375;STAT2,4,6:-0.915257088855;ATF5_CREB3:-0.922236355338;FOXQ1:-0.924761488297;NR1H4:-0.998763482888;NHLH1,2:-1.04391388533;SREBF1,2:-1.09934583509;ATF4:-1.10925957541;NFE2L1:-1.11362967493;YY1:-1.1170827224;HES1:-1.12266294509;STAT5{A,B}:-1.13114961448;FOXP3:-1.22134197418;RORA:-1.23055433671;NFIL3:-1.31713970317;NR5A1,2:-1.39667558726;PAX2:-1.45125248401 | |top_motifs=ZNF148:2.49311642196;T:2.38684301189;CDC5L:2.09414826195;HMX1:1.92659985078;NKX3-1:1.82937013253;IKZF2:1.75128802871;MYBL2:1.58126467378;TOPORS:1.53314981946;FOS_FOS{B,L1}_JUN{B,D}:1.46846555309;ZNF384:1.40731703063;SRF:1.35166731156;DBP:1.2806304692;SNAI1..3:1.22472394014;FOX{I1,J2}:1.19520151334;FOXP1:1.1725417699;HAND1,2:1.10202691479;NR3C1:1.0876389595;GFI1:1.06296063683;TBP:1.0232607681;ADNP_IRX_SIX_ZHX:0.990270249277;TP53:0.981571225289;NKX6-1,2:0.954083762958;TFCP2:0.945873038072;XCPE1{core}:0.887729892855;ZNF238:0.867396031316;HMGA1,2:0.865526359618;TBX4,5:0.858994859307;NKX2-1,4:0.839176748706;CRX:0.825651044689;NKX3-2:0.806523374969;GTF2I:0.798446709235;GATA4:0.792600335926;POU5F1:0.79235528504;SOX5:0.780638809725;EBF1:0.761848425236;TLX2:0.733065520893;NANOG:0.705141041067;PITX1..3:0.701445154311;PAX4:0.700972187606;HOX{A5,B5}:0.667653309385;ZIC1..3:0.666838367784;RXRA_VDR{dimer}:0.659994516587;ZNF423:0.65966815061;TEAD1:0.652900681411;FOX{D1,D2}:0.65279636336;IKZF1:0.65145184546;KLF4:0.626865533162;GLI1..3:0.614872632058;TLX1..3_NFIC{dimer}:0.575127628542;EVI1:0.563120598994;TEF:0.547631449785;MAZ:0.546379219826;BACH2:0.531047295821;FOXA2:0.507889998066;SP1:0.491042653809;EN1,2:0.488968745928;MYOD1:0.476619067289;CDX1,2,4:0.475148561184;LEF1_TCF7_TCF7L1,2:0.45152691975;BPTF:0.429448903038;RBPJ:0.426331594133;PRDM1:0.390767484849;GCM1,2:0.381904566683;PAX1,9:0.381326168334;RREB1:0.377698178094;GFI1B:0.376748883089;ZEB1:0.37367976932;ZBTB16:0.365628298979;FOX{F1,F2,J1}:0.364570977567;E2F1..5:0.354208510418;VSX1,2:0.35181482848;HNF1A:0.345823090127;FOXO1,3,4:0.342804226556;FOXM1:0.327818125751;ONECUT1,2:0.292626786995;NFIX:0.286165010586;FOSL2:0.265549436348;GATA6:0.245644359052;GTF2A1,2:0.218182381173;NKX2-2,8:0.216439168826;EP300:0.208176241093;AR:0.200823849358;PATZ1:0.183702024428;POU1F1:0.163894184343;FOXN1:0.155930694419;BREu{core}:0.151370627682;PPARG:0.111820491852;HNF4A_NR2F1,2:0.102428096869;NFY{A,B,C}:0.0998590485706;ATF2:0.0910258551756;TFAP2{A,C}:0.0895188387084;PAX5:0.0811786434187;IRF7:0.0779089868823;POU6F1:0.0731717452305;PRRX1,2:0.073171531473;GZF1:0.0702310167903;NFE2:0.0625603234815;AIRE:0.0301371355208;ARID5B:0.0258496622808;TFAP4:0.0130778435041;STAT1,3:-0.00767663063236;MZF1:-0.0183637164163;HBP1_HMGB_SSRP1_UBTF:-0.0221097516244;NKX2-3_NKX2-5:-0.0502537738928;NFATC1..3:-0.0565675862252;SPZ1:-0.073061139435;HIC1:-0.0742444165726;LMO2:-0.0797190080031;SOX{8,9,10}:-0.0806039524473;REST:-0.0915750794619;MYFfamily:-0.105073916877;ESRRA:-0.107465351483;UFEwm:-0.120921094176;SMAD1..7,9:-0.125100403091;NFE2L2:-0.13441972418;ZNF143:-0.135078005248;RFX2..5_RFXANK_RFXAP:-0.148982652965;ETS1,2:-0.152333490384;ELF1,2,4:-0.156035081135;TGIF1:-0.156398495404;MED-1{core}:-0.157488024826;DMAP1_NCOR{1,2}_SMARC:-0.163384510412;HIF1A:-0.172085837415;ATF6:-0.17959763011;EGR1..3:-0.180177587057;PAX8:-0.187971261518;TAL1_TCF{3,4,12}:-0.191104956546;SOX2:-0.191486349673;LHX3,4:-0.196968082064;HSF1,2:-0.209055248464;POU3F1..4:-0.209588147682;ESR1:-0.234487981404;TFDP1:-0.237645397693;SOX17:-0.251675792377;TFAP2B:-0.261869530474;AHR_ARNT_ARNT2:-0.26395198498;MAFB:-0.288680974234;FOXD3:-0.299241609181;HOX{A4,D4}:-0.332253997202;CEBPA,B_DDIT3:-0.335044300313;HOXA9_MEIS1:-0.348821292119;IRF1,2:-0.350541368736;SPIB:-0.37589192806;CUX2:-0.421683418648;MEF2{A,B,C,D}:-0.424753863866;HLF:-0.437505953394;FOXL1:-0.452961907716;POU2F1..3:-0.455753908626;PAX6:-0.460449271137;OCT4_SOX2{dimer}:-0.462354332349;RFX1:-0.471614933866;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.498224877718;NRF1:-0.51028537734;MYB:-0.511480944564;CREB1:-0.516909704243;ZFP161:-0.54201409861;ELK1,4_GABP{A,B1}:-0.555169064553;NFKB1_REL_RELA:-0.558132091999;NR6A1:-0.580810638479;ALX4:-0.632811479199;SPI1:-0.636038151096;ZBTB6:-0.637907979202;PDX1:-0.643795069689;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.664212240034;RUNX1..3:-0.669922631061;RXR{A,B,G}:-0.706701177998;bHLH_family:-0.722354334927;JUN:-0.740974623987;PBX1:-0.746789143347;MTF1:-0.760098092964;ALX1:-0.799820966983;NANOG{mouse}:-0.879967827091;MTE{core}:-0.891243180375;STAT2,4,6:-0.915257088855;ATF5_CREB3:-0.922236355338;FOXQ1:-0.924761488297;NR1H4:-0.998763482888;NHLH1,2:-1.04391388533;SREBF1,2:-1.09934583509;ATF4:-1.10925957541;NFE2L1:-1.11362967493;YY1:-1.1170827224;HES1:-1.12266294509;STAT5{A,B}:-1.13114961448;FOXP3:-1.22134197418;RORA:-1.23055433671;NFIL3:-1.31713970317;NR5A1,2:-1.39667558726;PAX2:-1.45125248401 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:1035-18D5;search_select_hide=table117:1035-18D5 | |||
}} | }} |
Latest revision as of 13:58, 3 June 2020
Name: | stomach, embryo E17 |
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Species: | Mouse (Mus musculus) |
Library ID: | CNhs11006 |
Sample type: | developmental |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs11006
0 | 0 |
1 | 0 |
10 | 0 |
100 | 0 |
1000 | 0.152 |
1001 | 0.0365 |
1002 | 0.505 |
1003 | 0.0399 |
1004 | 0 |
1005 | 0.0825 |
1006 | -0.151 |
1007 | 0.0354 |
1008 | 0 |
1009 | 0.111 |
101 | 0.0456 |
1010 | 0.0825 |
1011 | 0.0462 |
1012 | 0 |
1013 | 0.0425 |
1014 | 0.627 |
1015 | 0.074 |
1016 | 0.157 |
1017 | 1.09 |
1018 | 0.427 |
1019 | 0 |
102 | 0 |
1020 | 0 |
1021 | 0 |
1022 | -0.0704 |
1023 | 0 |
1024 | 0.0561 |
1025 | 0.862 |
1026 | 0.053 |
1027 | 0.0908 |
1028 | 0 |
1029 | 0.391 |
103 | 0.311 |
1030 | 0.0825 |
1031 | 0.365 |
1032 | 0.103 |
1033 | 0.00724 |
1034 | 0.0655 |
1035 | 0 |
1036 | 0.147 |
1037 | 0 |
1038 | 0.0245 |
1039 | -0.0782 |
104 | 0 |
1040 | 0.0578 |
1041 | 0 |
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11006
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11006
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.603 |
10 | 10 | 0.459 |
100 | 100 | 0.532 |
101 | 101 | 0.836 |
102 | 102 | 0.903 |
103 | 103 | 0.13 |
104 | 104 | 0.755 |
105 | 105 | 0.922 |
106 | 106 | 0.00507 |
107 | 107 | 0.0204 |
108 | 108 | 0.712 |
109 | 109 | 0.983 |
11 | 11 | 0.634 |
110 | 110 | 0.532 |
111 | 111 | 0.941 |
112 | 112 | 0.69 |
113 | 113 | 0.125 |
114 | 114 | 0.244 |
115 | 115 | 0.938 |
116 | 116 | 0.204 |
117 | 117 | 0.467 |
118 | 118 | 0.172 |
119 | 119 | 0.801 |
12 | 12 | 0.734 |
120 | 120 | 0.401 |
121 | 121 | 0.284 |
122 | 122 | 0.502 |
123 | 123 | 0.466 |
124 | 124 | 0.502 |
125 | 125 | 0.817 |
126 | 126 | 0.167 |
127 | 127 | 0.758 |
128 | 128 | 0.0546 |
129 | 129 | 0.546 |
13 | 13 | 0.0299 |
130 | 130 | 0.342 |
131 | 131 | 0.12 |
132 | 132 | 0.501 |
133 | 133 | 0.464 |
134 | 134 | 0.318 |
135 | 135 | 0.974 |
136 | 136 | 0.386 |
137 | 137 | 0.526 |
138 | 138 | 0.0145 |
139 | 139 | 0.652 |
14 | 14 | 0.817 |
140 | 140 | 0.0488 |
141 | 141 | 0.421 |
142 | 142 | 0.521 |
143 | 143 | 0.235 |
144 | 144 | 0.291 |
145 | 145 | 0.212 |
146 | 146 | 0.486 |
147 | 147 | 0.545 |
148 | 148 | 0.75 |
149 | 149 | 0.728 |
15 | 15 | 0.231 |
150 | 150 | 0.48 |
151 | 151 | 0.884 |
152 | 152 | 0.164 |
153 | 153 | 0.714 |
154 | 154 | 0.907 |
155 | 155 | 0.962 |
156 | 156 | 3.31114e-6 |
157 | 157 | 0.675 |
158 | 158 | 0.681 |
159 | 159 | 0.0288 |
160 | 160 | 0.0373 |
161 | 161 | 0.251 |
162 | 162 | 0.541 |
163 | 163 | 0.55 |
164 | 164 | 0.804 |
165 | 165 | 0.615 |
166 | 166 | 0.199 |
167 | 167 | 0.536 |
168 | 168 | 0.162 |
169 | 169 | 0.0553 |
17 | 17 | 0.0623 |
18 | 18 | 0.362 |
19 | 19 | 0.0262 |
2 | 2 | 0.609 |
20 | 20 | 0.358 |
21 | 21 | 0.107 |
22 | 22 | 0.315 |
23 | 23 | 0.537 |
24 | 24 | 0.516 |
25 | 25 | 0.0593 |
26 | 26 | 0.00251 |
27 | 27 | 0.827 |
28 | 28 | 0.78 |
29 | 29 | 0.752 |
3 | 3 | 0.789 |
30 | 30 | 0.105 |
31 | 31 | 0.746 |
32 | 32 | 0.132 |
33 | 33 | 0.907 |
34 | 34 | 0.875 |
35 | 35 | 0.409 |
36 | 36 | 0.552 |
37 | 37 | 0.223 |
38 | 38 | 0.739 |
39 | 39 | 0.17 |
4 | 4 | 0.173 |
40 | 40 | 0.805 |
41 | 41 | 0.275 |
42 | 42 | 0.572 |
43 | 43 | 0.368 |
44 | 44 | 0.373 |
45 | 45 | 0.372 |
46 | 46 | 0.405 |
47 | 47 | 0.804 |
48 | 48 | 0.597 |
49 | 49 | 0.688 |
5 | 5 | 0.451 |
50 | 50 | 0.283 |
51 | 51 | 0.592 |
52 | 52 | 0.0382 |
53 | 53 | 0.34 |
54 | 54 | 0.627 |
55 | 55 | 0.89 |
56 | 56 | 0.532 |
57 | 57 | 0.529 |
58 | 58 | 0.934 |
59 | 59 | 0.684 |
6 | 6 | 0.133 |
60 | 60 | 0.0862 |
61 | 61 | 0.603 |
62 | 62 | 0.435 |
63 | 63 | 0.669 |
64 | 64 | 0.743 |
65 | 65 | 0.903 |
66 | 66 | 0.427 |
67 | 67 | 0.838 |
68 | 68 | 0.146 |
69 | 69 | 0.219 |
7 | 7 | 0.385 |
70 | 70 | 0.414 |
71 | 71 | 0.0536 |
72 | 72 | 0.669 |
73 | 73 | 0.624 |
74 | 74 | 0.404 |
75 | 75 | 0.675 |
76 | 76 | 0.263 |
77 | 77 | 0.00157 |
78 | 78 | 0.629 |
79 | 79 | 0.884 |
8 | 8 | 0.873 |
80 | 80 | 0.164 |
81 | 81 | 0.761 |
82 | 82 | 0.85 |
83 | 83 | 0.995 |
84 | 84 | 0.414 |
85 | 85 | 0.742 |
86 | 86 | 0.672 |
87 | 87 | 0.00199 |
88 | 88 | 0.141 |
89 | 89 | 0.865 |
9 | 9 | 0.177 |
90 | 90 | 0.658 |
91 | 91 | 0.795 |
92 | 92 | 0.206 |
93 | 93 | 0.231 |
94 | 94 | 0.51 |
95 | 95 | 0.591 |
96 | 96 | 0.293 |
97 | 97 | 0.583 |
98 | 98 | 0.548 |
99 | 99 | 0.0756 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11006
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000945 (stomach)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010039 (food storage organ)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0005409 (gastrointestinal system)
0001041 (foregut)
FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000999 (fetal tissue sample)
0000292 (embryonic day sample - mouse)
0000004 (tissue sample)
0000300 (mouse embryonic day 17 sample)
0011492 (mouse stomach- embryo E17 sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)