FF:13366-143F9: Difference between revisions

Latest revision as of 18:57, 4 June 2020

Name:	HES3-GFP Embryonic Stem cells, cardiomyocytic induction
Species:	Human (Homo sapiens)
Library ID:	CNhs13738
Sample type:	time courses
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	NA
age	NA
cell type	SELECT CELL TYPE
cell line	NA
company	NA
collaboration	Christine Mummery/Robert Passier
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	IV-3
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005086

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13738		CAGE		DRX008588		DRR009460

Accession ID Hg19

Library id		BAM		CTSS
CNhs13738		DRZ000885		DRZ002270

Accession ID Hg38

Library id		BAM		CTSS
CNhs13738		DRZ012235		DRZ013620

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.135
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.624
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0.391
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.00465
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.178
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.188
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0.0445
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0673
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0.238
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.858
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.731
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.497
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.579
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.135
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0.632
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13738

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.04136e-4
MA0003.1	MA0003.1	0.0225
MA0004.1	MA0004.1	0.696
MA0006.1	MA0006.1	0.642
MA0007.1	MA0007.1	0.977
MA0009.1	MA0009.1	0.826
MA0014.1	MA0014.1	0.561
MA0017.1	MA0017.1	0.0983
MA0018.2	MA0018.2	0.725
MA0019.1	MA0019.1	0.457
MA0024.1	MA0024.1	2.65553e-8
MA0025.1	MA0025.1	0.156
MA0027.1	MA0027.1	0.421
MA0028.1	MA0028.1	0.174
MA0029.1	MA0029.1	0.383
MA0030.1	MA0030.1	0.0518
MA0031.1	MA0031.1	0.0341
MA0035.2	MA0035.2	0.94
MA0038.1	MA0038.1	0.00522
MA0039.2	MA0039.2	0.0738
MA0040.1	MA0040.1	0.258
MA0041.1	MA0041.1	0.189
MA0042.1	MA0042.1	0.319
MA0043.1	MA0043.1	0.4
MA0046.1	MA0046.1	0.219
MA0047.2	MA0047.2	0.0053
MA0048.1	MA0048.1	0.213
MA0050.1	MA0050.1	2.02751e-10
MA0051.1	MA0051.1	1.82475e-6
MA0052.1	MA0052.1	0.0313
MA0055.1	MA0055.1	0.2
MA0057.1	MA0057.1	0.204
MA0058.1	MA0058.1	0.853
MA0059.1	MA0059.1	0.641
MA0060.1	MA0060.1	1.36805e-14
MA0061.1	MA0061.1	0.00198
MA0062.2	MA0062.2	0.849
MA0065.2	MA0065.2	0.924
MA0066.1	MA0066.1	0.352
MA0067.1	MA0067.1	0.14
MA0068.1	MA0068.1	6.0827e-4
MA0069.1	MA0069.1	0.536
MA0070.1	MA0070.1	0.48
MA0071.1	MA0071.1	0.727
MA0072.1	MA0072.1	0.749
MA0073.1	MA0073.1	0.66
MA0074.1	MA0074.1	0.345
MA0076.1	MA0076.1	0.211
MA0077.1	MA0077.1	0.0308
MA0078.1	MA0078.1	0.391
MA0079.2	MA0079.2	0.818
MA0080.2	MA0080.2	2.89264e-12
MA0081.1	MA0081.1	0.0222
MA0083.1	MA0083.1	0.0145
MA0084.1	MA0084.1	0.351
MA0087.1	MA0087.1	0.29
MA0088.1	MA0088.1	0.909
MA0090.1	MA0090.1	0.273
MA0091.1	MA0091.1	0.0199
MA0092.1	MA0092.1	0.0678
MA0093.1	MA0093.1	0.621
MA0099.2	MA0099.2	1.47646e-21
MA0100.1	MA0100.1	0.549
MA0101.1	MA0101.1	0.0105
MA0102.2	MA0102.2	2.31822e-5
MA0103.1	MA0103.1	0.133
MA0104.2	MA0104.2	0.526
MA0105.1	MA0105.1	0.0171
MA0106.1	MA0106.1	0.894
MA0107.1	MA0107.1	0.00124
MA0108.2	MA0108.2	0.222
MA0111.1	MA0111.1	0.962
MA0112.2	MA0112.2	1.60393e-4
MA0113.1	MA0113.1	0.0032
MA0114.1	MA0114.1	0.89
MA0115.1	MA0115.1	0.468
MA0116.1	MA0116.1	0.0421
MA0117.1	MA0117.1	0.273
MA0119.1	MA0119.1	0.0939
MA0122.1	MA0122.1	0.739
MA0124.1	MA0124.1	0.762
MA0125.1	MA0125.1	0.0142
MA0131.1	MA0131.1	0.492
MA0135.1	MA0135.1	0.0426
MA0136.1	MA0136.1	8.34286e-11
MA0137.2	MA0137.2	0.00817
MA0138.2	MA0138.2	0.511
MA0139.1	MA0139.1	0.629
MA0140.1	MA0140.1	0.623
MA0141.1	MA0141.1	0.458
MA0142.1	MA0142.1	1.59233e-12
MA0143.1	MA0143.1	1.12184e-6
MA0144.1	MA0144.1	0.00329
MA0145.1	MA0145.1	0.174
MA0146.1	MA0146.1	0.165
MA0147.1	MA0147.1	0.514
MA0148.1	MA0148.1	0.0162
MA0149.1	MA0149.1	0.883
MA0150.1	MA0150.1	9.38987e-5
MA0152.1	MA0152.1	0.801
MA0153.1	MA0153.1	0.333
MA0154.1	MA0154.1	0.0174
MA0155.1	MA0155.1	0.764
MA0156.1	MA0156.1	3.85217e-7
MA0157.1	MA0157.1	0.0452
MA0159.1	MA0159.1	0.075
MA0160.1	MA0160.1	0.266
MA0162.1	MA0162.1	0.73
MA0163.1	MA0163.1	9.65072e-4
MA0164.1	MA0164.1	0.972
MA0258.1	MA0258.1	0.0916
MA0259.1	MA0259.1	0.581

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13738

Novel motif	Logo	P-value
1	1	0.635
10	10	0.212
100	100	0.388
101	101	0.925
102	102	0.836
103	103	0.0632
104	104	0.637
105	105	0.117
106	106	0.0188
107	107	0.53
108	108	0.825
109	109	0.318
11	11	0.403
110	110	0.467
111	111	0.197
112	112	0.343
113	113	0.141
114	114	0.0873
115	115	0.749
116	116	0.583
117	117	0.525
118	118	0.989
119	119	0.453
12	12	0.725
120	120	0.485
121	121	0.554
122	122	0.477
123	123	0.0597
124	124	0.453
125	125	0.702
126	126	0.304
127	127	0.407
128	128	0.583
129	129	0.635
13	13	0.872
130	130	0.903
131	131	0.929
132	132	0.762
133	133	0.129
134	134	0.588
135	135	0.0143
136	136	0.197
137	137	0.223
138	138	0.161
139	139	0.164
14	14	0.856
140	140	0.215
141	141	0.955
142	142	0.369
143	143	0.0225
144	144	0.513
145	145	0.844
146	146	0.52
147	147	0.762
148	148	0.0356
149	149	0.0105
15	15	0.222
150	150	0.605
151	151	0.0823
152	152	0.0756
153	153	0.181
154	154	0.488
155	155	0.958
156	156	0.426
157	157	0.892
158	158	0.432
159	159	0.737
16	16	0.411
160	160	0.353
161	161	0.46
162	162	0.195
163	163	0.162
164	164	0.502
165	165	0.439
166	166	0.733
167	167	0.662
168	168	0.0899
169	169	0.00397
17	17	0.179
18	18	0.185
19	19	0.183
2	2	0.226
20	20	0.728
21	21	0.499
22	22	0.0513
23	23	0.00385
24	24	0.336
25	25	0.533
26	26	0.946
27	27	0.171
28	28	0.727
29	29	0.555
3	3	0.292
30	30	0.557
31	31	0.894
32	32	0.0187
33	33	0.935
34	34	0.571
35	35	0.718
36	36	0.557
37	37	0.217
38	38	0.315
39	39	0.422
4	4	0.592
40	40	0.818
41	41	0.0274
42	42	0.634
43	43	0.137
44	44	0.534
45	45	0.372
46	46	0.301
47	47	0.842
48	48	0.921
49	49	0.201
5	5	0.237
50	50	0.96
51	51	0.33
52	52	0.218
53	53	0.614
54	54	0.238
55	55	0.0774
56	56	0.665
57	57	0.676
58	58	0.102
59	59	0.0435
6	6	0.467
60	60	0.0475
61	61	0.85
62	62	0.0473
63	63	0.175
64	64	0.645
65	65	0.0488
66	66	0.487
67	67	0.574
68	68	0.716
69	69	0.469
7	7	0.722
70	70	0.039
71	71	0.0927
72	72	0.384
73	73	0.0461
74	74	0.645
75	75	0.24
76	76	0.771
77	77	0.151
78	78	0.708
79	79	0.23
8	8	0.59
80	80	0.0221
81	81	0.52
82	82	0.148
83	83	0.886
84	84	0.386
85	85	0.0242
86	86	0.483
87	87	0.383
88	88	0.874
89	89	0.121
9	9	0.0308
90	90	0.941
91	91	0.692
92	92	0.0798
93	93	0.135
94	94	0.197
95	95	0.501
96	96	0.179
97	97	0.652
98	98	0.56
99	99	0.562

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13738

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

FF: FANTOM5
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005086
-|accession_numbers=CAGE;DRX008588;DRR009460;DRZ000885;DRZ002270
+|accession_numbers=CAGE;DRX008588;DRR009460;DRZ000885;DRZ002270;DRZ012235;DRZ013620
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
+|donor= biol_rep3 (UH-3)
 |expression_enrichment_score=chr20:31350184..31350200,+!p1@DNMT3B!2.56!724.12!DNMT3B;;chr3:181429704..181429722,+!p1@SOX2!2.24!171.17!SOX2;;chr14:57272369..57272391,-!p2@OTX2!2.17!147.45!OTX2;;chr8:73921136..73921151,+!p2@TERF1!2.14!202.20!TERF1;;chr8:128428066..128428078,+!p1@POU5F1B!2.05!110.22!POU5F1B;;chr8:70983476..70983493,-!p1@PRDM14!1.99!97.45!PRDM14;;chrX:136648279..136648295,+!p1@ZIC3!1.99!96.35!ZIC3;;chr6:31138439..31138475,-!p1@POU5F1!1.96!90.88!POU5F1;;chr1:6304233..6304243,+!p1@HES3!1.91!79.57!HES3;;chr8:145701192..145701241,-!p1@FOXH1!1.83!66.79!FOXH1;;chr1:164528687..164528711,+!p6@PBX1!1.82!75.19!PBX1;;chr2:5832508..5832524,+!p1@SOX11!1.77!58.40!SOX11;;chr13:100623375..100623425,-!p1@ZIC5!1.74!54.38!ZIC5;;chr13:100634031..100634045,+!p1@ZIC2!1.67!45.26!ZIC2;;chr16:3149278..3149305,-!p1@ZSCAN10!1.64!42.70!ZSCAN10;;chr3:57234000..57234014,-!p1@HESX1!1.63!41.97!HESX1;;chr5:2751762..2751784,-!p1@IRX2!1.60!38.69!IRX2;;chr20:50418972..50419029,-!p1@SALL4!1.60!38.69!SALL4;;chrX:136648643..136648711,+!p2@ZIC3!1.59!37.59!ZIC3;;chrX:136648297..136648319,+!p3@ZIC3!1.57!35.77!ZIC3;;chr14:57277178..57277203,-!p1@OTX2!1.56!35.40!OTX2;;chr5:2751785..2751808,-!p2@IRX2!1.49!29.56!IRX2;;chr12:7941989..7942014,+!p1@NANOG!1.43!25.91!NANOG;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.40!24.09!ZBED1;;chr2:25475094..25475112,-!p3@DNMT3A!1.39!23.72!DNMT3A;;chr14:90085820..90085840,-!p6@FOXN3!1.37!22.63!FOXN3;;chr3:181429741..181429767,+!p2@SOX2!1.37!22.26!SOX2;;chr9:114287433..114287513,+!p1@ZNF483!1.36!55.84!ZNF483;;chr19:20188776..20188826,+!p1@ZNF90!1.34!55.11!ZNF90;;chr11:63684602..63684664,-!p1@RCOR2!1.34!41.24!RCOR2;;chr3:71355163..71355209,-!p5@FOXP1!1.34!28.47!FOXP1;;chr18:56530136..56530199,+!p3@ZNF532!1.32!29.56!ZNF532;;chrX:139587228..139587234,-!p1@SOX3!1.32!20.07!SOX3;;chr8:70983443..70983460,-!p2@PRDM14!1.32!19.71!PRDM14;;chr2:25475120..25475176,-!p2@DNMT3A!1.30!25.55!DNMT3A;;chr13:100634004..100634025,+!p2@ZIC2!1.30!18.98!ZIC2;;chr8:73921067..73921078,+!p3@TERF1!1.29!29.20!TERF1;;chr13:100638100..100638115,+!p4@ZIC2!1.27!17.52!ZIC2;;chr20:50419055..50419066,-!p3@SALL4!1.27!17.52!SALL4;;chr3:170076314..170076334,+!p2@SKIL!1.26!22.63!SKIL;;chr9:127533519..127533573,-!p2@NR6A1!1.26!20.80!NR6A1;;chr10:70320074..70320106,+!p1@TET1!1.25!33.21!TET1;;chr9:127358120..127358170,-!p3@NR6A1!1.24!16.42!NR6A1;;chr19:58400344..58400364,-!p2@ZNF814!1.21!22.26!ZNF814;;chr14:22005197..22005261,-!p3@SALL2!1.19!14.60!SALL2;;chr8:70983506..70983522,-!p3@PRDM14!1.18!14.23!PRDM14;;chr19:46800289..46800327,+!p2@HIF3A!1.18!14.23!HIF3A;;chr20:50418128..50418147,-!p2@SALL4!1.18!14.23!SALL4;;chr2:42795745..42795824,+!p1@MTA3!1.16!121.90!MTA3;;chr19:23299814..23299844,+!p1@ZNF730!1.15!16.06!ZNF730;;chr2:5832493..5832507,+!p2@SOX11!1.12!12.04!SOX11;;chr12:7942020..7942031,+!p2@NANOG!1.12!12.04!NANOG;;chr5:124084493..124084524,-!p2@ZNF608!1.11!26.64!ZNF608;;chr15:57511609..57511651,+!p2@TCF12!1.11!20.07!TCF12;;chr19:58400372..58400411,-!p1@ZNF814!1.10!60.22!ZNF814;;chr19:46367576..46367592,+!p1@FOXA3!1.09!11.31!FOXA3;;chr10:135043702..135043729,+!p1@UTF1!1.09!11.31!UTF1;;chr11:120107344..120107351,+!p1@POU2F3!1.08!13.50!POU2F3;;chr18:56531584..56531646,+!p4@ZNF532!1.06!13.87!ZNF532;;chr2:85360499..85360598,+!p1@TCF7L1!1.05!57.67!TCF7L1;;chr3:48282587..48282603,+!p1@ZNF589!1.05!45.99!ZNF589;;chr17:46132044..46132080,+!p4@NFE2L1!1.05!10.22!NFE2L1;;chr13:100638124..100638136,+!p7@ZIC2!1.05!10.22!ZIC2;;chr8:55370487..55370503,+!p1@SOX17!1.04!9.85!SOX17;;chr2:16080659..16080685,+!p1@MYCN!1.04!9.85!MYCN;;chr20:31368212..31368235,+!p2@DNMT3B!1.04!9.85!DNMT3B;;chr12:66218836..66218888,+!p1@HMGA2!1.02!89.05!HMGA2;;chr19:23433144..23433204,-!p1@ZNF724P!1.02!43.07!ZNF724P;;chr8:40755333..40755352,-!p1@ZMAT4!1.02!9.49!ZMAT4;;chr8:145701166..145701187,-!p2@FOXH1!1.01!9.12!FOXH1;;chr2:88752207..88752218,-!p1@FOXI3!1.01!9.12!FOXI3;;chr1:40367530..40367597,-!p1@MYCL1!1.00!16.42!MYCL1;;chr9:127533582..127533615,-!p1@NR6A1!1.00!13.50!NR6A1;;chr2:166326200..166326216,+!p1@CSRNP3!0.99!13.14!CSRNP3;;chr1:91487013..91487070,-!p6@ZNF644!0.99!12.41!ZNF644;;chr2:16082155..16082169,+!p3@MYCN!0.99!8.76!MYCN;;chr8:102504651..102504683,+!p1@GRHL2!0.99!8.76!GRHL2;;chr20:42295713..42295738,+!p2@MYBL2!0.98!51.46!MYBL2;;chr17:47892398..47892407,+!p2@KAT7!0.97!8.39!KAT7;;chr11:128457446..128457461,-!p4@ETS1!0.97!8.39!ETS1;;chr11:71955210..71955227,-!p1@PHOX2A!0.97!8.39!PHOX2A;;chr17:7197911..7197964,-!p1@YBX2!0.96!8.03!YBX2;;chr2:16081912..16081931,+!p2@MYCN!0.96!8.03!MYCN;;chr19:22034809..22034878,-!p2@ZNF43!0.95!28.83!ZNF43;;chr14:21994337..21994442,-!p1@SALL2!0.95!22.26!SALL2;;chr19:58341656..58341694,+!p5@ZNF587!0.94!9.49!ZNF587;;chr2:121493425..121493474,+!p1@GLI2!0.93!17.15!GLI2;;chr16:29818199..29818216,+!p11@MAZ!0.93!12.41!MAZ;;chr3:48282607..48282618,+!p3@ZNF589!0.93!10.22!ZNF589;;chr14:55493763..55493824,-!p1@WDHD1!0.92!56.94!WDHD1;;chr8:86089627..86089653,+!p3@E2F5!0.92!8.39!E2F5;;chr2:88752231..88752245,-!p2@FOXI3!0.92!7.30!FOXI3;;chr1:226411361..226411366,+!p1@MIXL1!0.92!7.30!MIXL1;;chr16:29818160..29818188,+!p6@MAZ!0.91!34.67!MAZ;;chr5:138647473..138647476,+!p6@MATR3!0.91!18.61!MATR3;;chr4:83821835..83821896,+!p1@THAP9!0.90!23.36!THAP9;;chr19:21265028..21265052,+!p2@ZNF714!0.90!12.77!ZNF714;;chr19:48774586..48774670,+!p1@ZNF114!0.90!8.76!ZNF114;;chr1:63788229..63788250,+!p1@FOXD3!0.90!6.93!FOXD3;;chr8:70983462..70983471,-!p4@PRDM14!0.90!6.93!PRDM14;;chr14:22005343..22005364,-!p5@SALL2!0.90!6.93!SALL2;;chr6:20402102..20402152,+!p1@E2F3!0.89!28.83!E2F3;;chr6:15246261..15246312,+!p1@JARID2!0.88!168.25!JARID2;;chr12:66218183..66218209,+!p4@HMGA2!0.88!13.14!HMGA2;;chr1:38512457..38512474,-!p1@POU3F1!0.88!7.30!POU3F1;;chr19:54024313..54024361,+!p7@ZNF331!0.88!6.57!ZNF331;;chrX:136648768..136648781,+!p6@ZIC3!0.88!6.57!ZIC3;;chr13:100623360..100623373,-!p2@ZIC5!0.88!6.57!ZIC5;;chr13:95364784..95364806,-!p1@SOX21!0.88!6.57!SOX21;;chr13:41240737..41240787,-!p1@FOXO1!0.87!80.66!FOXO1;;chr20:42295745..42295765,+!p1@MYBL2!0.86!107.67!MYBL2;;chr12:19592405..19592492,+!p2@AEBP2!0.86!57.30!AEBP2;;chr20:35202909..35202963,+!p2@TGIF2,p3@C20orf24!0.86!9.12!TGIF2;;chr2:60778035..60778060,-!p4@BCL11A!0.86!7.66!BCL11A;;chr16:51185363..51185381,-!p4@SALL1!0.86!6.20!SALL1;;chr9:79633656..79633659,+!p@chr9:79633656..79633659,+!0.86!6.20!FOXB2;;chr19:21264991..21265026,+!p1@ZNF714!0.85!42.34!ZNF714;;chr10:114710244..114710257,+!p3@TCF7L2!0.85!17.52!TCF7L2;;chr8:60031762..60031803,-!p3@TOX!0.85!9.12!TOX;;chr6:31869828..31869880,-!p1@ZBTB12!0.84!11.68!ZBTB12;;chr6:15245797..15245818,+!p8@JARID2!0.84!7.30!JARID2;;chr22:21771656..21771662,+!p1@HIC2!0.84!5.84!HIC2;;chr1:202777535..202777556,-!p1@KDM5B!0.83!204.75!KDM5B;;chr12:50479109..50479146,+!p2@SMARCD1!0.83!105.84!SMARCD1;;chr5:138609782..138609826,+!p5@MATR3!0.82!39.05!MATR3;;chr19:45579725..45579743,-!p1@ZNF296!0.82!27.01!ZNF296;;chr2:239148671..239148686,-!p1@HES6!0.82!21.90!HES6;;chr4:26322267..26322334,+!p3@RBPJ!0.81!13.87!RBPJ;;chrX:84499081..84499115,+!p2@ZNF711!0.81!8.39!ZNF711;;chr10:48355030..48355090,+!p1@ZNF488!0.81!7.30!ZNF488;;chrX:136648753..136648767,+!p5@ZIC3!0.81!5.47!ZIC3;;chr1:32930647..32930684,+!p1@ZBTB8B,p4@ZBTB8A!0.81!5.47!ZBTB8B;;chr18:76740152..76740186,+!p2@SALL3!0.81!5.47!SALL3;;chr7:121944796..121944814,-!p1@FEZF1!0.81!5.47!FEZF1;;chr18:56532100..56532130,+!p1@ZNF532!0.80!10.22!ZNF532;;chr3:141747441..141747452,-!p4@TFDP2!0.80!7.66!TFDP2;;chr20:55205825..55205847,+!p2@TFAP2C!0.79!5.11!TFAP2C;;chr10:126138597..126138612,-!p1@NKX1-2!0.79!5.11!NKX1-2;;chrX:136650899..136650918,+!p7@ZIC3!0.79!5.11!ZIC3;;chr16:30406423..30406447,+!p4@ZNF48!0.79!5.11!ZNF48;;chr18:3451646..3451691,+!p3@TGIF1!0.78!14.60!TGIF1;;chr19:20011775..20011800,+!p2@ZNF93!0.78!9.49!ZNF93;;chr1:91487806..91487826,-!p5@ZNF644!0.78!9.12!ZNF644;;chr8:37963407..37963454,+!p2@ASH2L!0.77!15.69!ASH2L;;chr19:54024251..54024305,+!p4@ZNF331!0.77!8.39!ZNF331;;chr9:86594530..86594564,-!p@chr9:86594530..86594564,-!0.76!19.71!HNRPK;;chr19:19617430..19617443,+!p9@GATAD2A!0.76!10.22!GATAD2A;;chr21:34144157..34144175,-!p3@GCFC1!0.76!8.03!GCFC1;;chr3:170076223..170076242,+!p6@SKIL!0.76!5.47!SKIL;;chr5:124082580..124082603,-!p4@ZNF608!0.76!5.47!ZNF608;;chr12:66218152..66218174,+!p10@HMGA2!0.76!5.11!HMGA2;;chr13:100634130..100634143,+!p3@ZIC2!0.76!4.74!ZIC2;;chrX:136648735..136648747,+!p9@ZIC3!0.76!4.74!ZIC3;;chr19:47538560..47538591,+!p2@NPAS1!0.76!4.74!NPAS1;;chr22:42739839..42739867,-!p1@ENST00000515426!0.76!4.74!TCF20;;chr19:23299851..23299880,+!p2@ZNF730!0.76!4.74!ZNF730;;chr7:150076406..150076456,+!p1@ZNF775!0.75!23.36!ZNF775;;chr2:121493492..121493537,+!p2@GLI2!0.75!8.03!GLI2;;chr19:49864746..49864780,-!p2@TEAD2!0.75!6.57!TEAD2;;chr7:64838786..64838809,+!p2@ZNF92!0.74!28.10!ZNF92;;chr12:7079780..7079791,-!p2@PHB2!0.74!26.28!PHB2;;chr20:55204351..55204377,+!p1@TFAP2C!0.74!5.84!TFAP2C;;chr10:114710098..114710130,+!p2@TCF7L2!0.73!36.50!TCF7L2;;chr19:58095501..58095535,+!p1@ZIK1!0.73!16.79!ZIK1;;chr10:97889464..97889494,+!p3@ZNF518A!0.73!8.76!ZNF518A;;chrX:84498989..84499003,+!p1@ZNF711!0.73!6.20!ZNF711;;chr16:51185573..51185593,-!p3@SALL1!0.73!4.38!SALL1;;chr16:52581025..52581072,-!p1@TOX3!0.73!4.38!TOX3;;chr19:50922187..50922204,+!p1@SPIB!0.73!4.38!SPIB;;chr2:60780607..60780624,-!p2@BCL11A!0.72!14.23!BCL11A;;chr2:74229812..74229867,+!p1@TET3!0.72!11.68!TET3;;chr1:91487836..91487854,-!p3@ZNF644!0.72!10.58!ZNF644;;chr3:44626446..44626477,+!p1@ZNF660!0.72!8.03!ZNF660;;chr8:60031682..60031710,-!p2@TOX!0.72!7.30!TOX;;chr1:204042233..204042249,+!p1@SOX13!0.71!29.20!SOX13;;chr2:60780753..60780800,-!p1@BCL11A!0.71!22.99!BCL11A;;chr3:48282536..48282586,+!p2@ZNF589!0.71!12.41!ZNF589;;chr1:247171347..247171366,-!p2@ZNF695!0.71!8.03!ZNF695;;chr1:247171316..247171336,-!p3@ZNF695!0.71!6.57!ZNF695;;chr8:60031809..60031835,-!p4@TOX!0.71!5.47!TOX;;chr12:3068544..3068597,+!p1@TEAD4!0.70!27.37!TEAD4;;chr19:19779619..19779670,+!p1@ZNF101!0.70!12.41!ZNF101;;chr19:58446721..58446779,-!p1@ZNF418!0.70!12.04!ZNF418;;chr12:66218212..66218244,+!p5@HMGA2!0.70!6.20!HMGA2;;chr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 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 40: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
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+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/HES3-GFP%2520Embryonic%2520Stem%2520cells%252c%2520cardiomyocytic%2520induction%252c%2520day00%252c%2520biol_rep3%2520%2528UH-3%2529.CNhs13738.13366-143F9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/HES3-GFP%2520Embryonic%2520Stem%2520cells%252c%2520cardiomyocytic%2520induction%252c%2520day00%252c%2520biol_rep3%2520%2528UH-3%2529.CNhs13738.13366-143F9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/HES3-GFP%2520Embryonic%2520Stem%2520cells%252c%2520cardiomyocytic%2520induction%252c%2520day00%252c%2520biol_rep3%2520%2528UH-3%2529.CNhs13738.13366-143F9.hg38.nobarcode.bam
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 |library_id=CNhs13738
-|library_id_phase_based=1:CNhs13738
+|library_id_phase_based=2:CNhs13738
-|name=HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep3 (UH-3)
+|microRNAs=
+|microRNAs_nn=
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+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;13366
+|name=HES3-GFP Embryonic Stem cells, cardiomyocytic induction
 |namespace=
 |part_of=
@@ Line 52: / Line 63: @@
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 |rna_box=143
 |rna_catalog_number=
-|rna_concentration=2.50
+|rna_concentration=2.5
 |rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
 |rna_lot_number=IV-3
@@ Line 65: / Line 77: @@
 |rna_sample_type=total RNA
 |rna_tube_id=143F9
-|rna_weight_ug=5.00
+|rna_weight_ug=5
 |sample_age=
 |sample_category=time courses
@@ Line 87: / Line 99: @@
 |sample_strain=
 |sample_tissue=
-|timecourse=Cardiomyocyte_differentiation
+|time= day00
+|timecourse=ES_to_cardiomyocyte
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:13366-143F9;search_select_hide=table117:FF:13366-143F9
 }}

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FF:13366-143F9: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:57, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0