FFCP PHASE1:Hg19::chr10:105212113..105212139,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr10:105212113..105212139,- to FFCP PHASE1:Hg19::chr10:105212113..105212139,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=51063 | |EntrezGene=51063 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23493 | |HGNC=23493 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=8bp_to_ENST00000461631_5end | |||
|cluster_id=chr10:105212113..105212139,- | |||
|coexpression_cluster_id=C2974 | |||
|description=CAGE_peak_1_at_CALHM2_5end | |||
|id=chr10:105212113..105212139,- | |||
|ontology_enrichment_celltype=CL:0000057!9.66e-16!75;CL:0000048!7.12e-10!430;CL:0000723!6.12e-09!436;CL:0000055!1.38e-08!180;CL:0002320!1.46e-08!365;CL:0000134!1.52e-08!358;CL:0002620!1.35e-07!23;CL:0000034!1.65e-07!444;CL:0002057!1.94e-07!42;CL:0000557!3.15e-07!71;CL:0002194!3.46e-07!63;CL:0000576!3.46e-07!63;CL:0000040!3.46e-07!63;CL:0000559!3.46e-07!63;CL:0002009!5.32e-07!65 | |||
|ontology_enrichment_celltype_v019=CL:0002620;9.10e-08;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,8.17e-16,76;CL:0000048,2.75e-11,427;CL:0000723,3.62e-10,433;CL:0000473,9.00e-10,48;CL:0000234,9.00e-10,48;CL:0002320,1.05e-09,361;CL:0000134,1.08e-09,354;CL:0002194,7.55e-09,59;CL:0000576,7.55e-09,59;CL:0000040,7.55e-09,59;CL:0000559,7.55e-09,59;CL:0000557,8.98e-09,67;CL:0002009,1.34e-08,61;CL:0000034,1.38e-08,441;CL:0000839,4.86e-08,66;CL:0002620,1.23e-07,23;CL:0000860,1.78e-07,42;CL:0002057,1.78e-07,42 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!2.10e-14!216;UBERON:0002204!1.05e-09!167;UBERON:0002193!3.45e-09!112;UBERON:0002390!1.50e-08!102;UBERON:0003061!1.50e-08!102;UBERON:0002384!1.58e-08!375;UBERON:0004872!1.87e-07!84;UBERON:0002371!2.04e-07!80;UBERON:0000926!3.00e-07!448;UBERON:0004120!3.00e-07!448;UBERON:0006603!3.00e-07!448;UBERON:0001009!3.10e-07!113;UBERON:0004535!5.37e-07!110 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,7.85e-20,315;UBERON:0004120,7.85e-20,315;UBERON:0006603,7.85e-20,315;UBERON:0003081,1.95e-18,203;UBERON:0002193,1.00e-10,108;UBERON:0002204,1.34e-10,167;UBERON:0002390,4.29e-10,98;UBERON:0003061,4.29e-10,98;UBERON:0002384,1.20e-09,371;UBERON:0002405,2.08e-09,93;UBERON:0002371,6.47e-09,76;UBERON:0004872,1.87e-07,83;UBERON:0001434,2.17e-07,100;UBERON:0001474,3.38e-07,82;UBERON:0001009,3.38e-07,112;UBERON:0004535,5.87e-07,109 | |||
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| ||
|short_description=p1@CALHM2 | |||
}} | }} |
Latest revision as of 03:38, 16 September 2015
Short description: | p1@CALHM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CALHM2_5end |
Coexpression cluster: | C2974_Mesenchymal_tenocyte_CD14_Cardiac_Synoviocyte_mesodermal_Hepatic |
Association with transcript: | 8bp_to_ENST00000461631_5end |
EntrezGene: | CALHM2 |
HGNC: | 23493 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 8.17e-16 | 76 |
multi fate stem cell | 2.75e-11 | 427 |
somatic stem cell | 3.62e-10 | 433 |
defensive cell | 9.00e-10 | 48 |
phagocyte | 9.00e-10 | 48 |
connective tissue cell | 1.05e-09 | 361 |
mesenchymal cell | 1.08e-09 | 354 |
monopoietic cell | 7.55e-09 | 59 |
monocyte | 7.55e-09 | 59 |
monoblast | 7.55e-09 | 59 |
promonocyte | 7.55e-09 | 59 |
granulocyte monocyte progenitor cell | 8.98e-09 | 67 |
macrophage dendritic cell progenitor | 1.34e-08 | 61 |
stem cell | 1.38e-08 | 441 |
myeloid lineage restricted progenitor cell | 4.86e-08 | 66 |
skin fibroblast | 1.23e-07 | 23 |
classical monocyte | 1.78e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.78e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 7.85e-20 | 315 |
mesoderm-derived structure | 7.85e-20 | 315 |
presumptive mesoderm | 7.85e-20 | 315 |
lateral plate mesoderm | 1.95e-18 | 203 |
hemolymphoid system | 1.00e-10 | 108 |
musculoskeletal system | 1.34e-10 | 167 |
hematopoietic system | 4.29e-10 | 98 |
blood island | 4.29e-10 | 98 |
connective tissue | 1.20e-09 | 371 |
immune system | 2.08e-09 | 93 |
bone marrow | 6.47e-09 | 76 |
splanchnic layer of lateral plate mesoderm | 1.87e-07 | 83 |
skeletal system | 2.17e-07 | 100 |
bone element | 3.38e-07 | 82 |
circulatory system | 3.38e-07 | 112 |
cardiovascular system | 5.87e-07 | 109 |