FFCP PHASE1:Hg19::chr11:119999611..119999625,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr11:119999611..119999625,- to FFCP PHASE1:Hg19::chr11:119999611..119999625,-: NSchange) |
No edit summary |
||
(12 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23650 | |EntrezGene=23650 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17274 | |HGNC=17274 | ||
|TSSclassifier=strong | |||
|UniProt=E9PRL4 | |UniProt=E9PRL4 | ||
|association_with_transcript=0bp_to_ENST00000529044,ENST00000532195_5end | |||
|cluster_id=chr11:119999611..119999625,- | |||
|coexpression_cluster_id=C2102 | |||
|description=CAGE_peak_9_at_TRIM29_5end | |||
|id=chr11:119999611..119999625,- | |||
|ontology_enrichment_celltype=CL:0002076!1.23e-14!43;CL:0000066!1.90e-14!254;CL:0002251!3.81e-12!21;CL:0000223!1.68e-10!59 | |||
|ontology_enrichment_celltype_v019=CL:0000349;7.82e-16;19!CL:0000575;3.70e-09;2!CL:0002536;9.13e-09;2!CL:0002537;1.89e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,8.22e-16,19;CL:0000066,2.62e-10,253;CL:0000575,6.43e-09,2;CL:0002536,1.17e-08,2;CL:0002537,1.93e-08,5 | |||
|ontology_enrichment_development_v019=UBERON:0008947;7.37e-15;29 | |||
|ontology_enrichment_disease=DOID:305!8.49e-09!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.40e-09,106 | |||
|ontology_enrichment_uberon=UBERON:0004119!3.61e-14!169;UBERON:0000925!3.61e-14!169;UBERON:0006595!3.61e-14!169;UBERON:0001004!3.74e-13!72;UBERON:0005631!7.14e-12!14;UBERON:0000158!7.14e-12!14;UBERON:0001737!7.57e-12!9;UBERON:0001007!9.09e-10!155;UBERON:0001555!9.09e-10!155;UBERON:0007026!9.09e-10!155;UBERON:0000062!7.75e-09!511;UBERON:0003124!8.66e-09!7;UBERON:0000077!9.56e-09!130;UBERON:0000161!1.87e-08!35;UBERON:0001557!2.18e-08!19;UBERON:0004921!2.63e-08!129;UBERON:0004185!2.63e-08!129;UBERON:0000065!2.97e-08!53;UBERON:0000166!1.07e-07!21;UBERON:0000064!1.64e-07!219;UBERON:0008947!8.80e-07!38;UBERON:0003258!8.80e-07!38 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;2.41e-28;9!UBERON:0001557;2.41e-28;9!UBERON:0005631;3.29e-19;10!UBERON:0000158;3.29e-19;10!UBERON:0000478;5.28e-15;24!UBERON:0000305;8.42e-15;7!UBERON:0000072;7.31e-10;37!UBERON:0001987;1.24e-09;4!UBERON:0000065;8.63e-09;44!UBERON:0003127;9.13e-09;2!UBERON:0001004;2.65e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,2.43e-28,9;UBERON:0005631,2.57e-27,14;UBERON:0000158,2.57e-27,14;UBERON:0000478,4.32e-15,24;UBERON:0000305,1.03e-14,7;UBERON:0003124,2.92e-14,7;UBERON:0004871,7.75e-13,8;UBERON:0001557,1.05e-12,19;UBERON:0004119,1.43e-11,160;UBERON:0000925,1.43e-11,160;UBERON:0006595,1.43e-11,160;UBERON:0008947,7.10e-11,38;UBERON:0003258,7.10e-11,38;UBERON:0001987,5.41e-10,4;UBERON:0004340,5.41e-10,4;UBERON:0003127,4.30e-09,2;UBERON:0001007,7.31e-09,145;UBERON:0001555,7.31e-09,145;UBERON:0007026,7.31e-09,145;UBERON:0001004,7.96e-09,74;UBERON:0000072,2.31e-08,47;UBERON:0001041,4.09e-08,87;UBERON:0004921,1.36e-07,118;UBERON:0000065,5.36e-07,54 | |||
|phase1_expression=0,0,0,0,0,0.872338524100369,2.53299878168311,0,0,0,0,1.09220686065086,1.58260186937072,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6024118375565,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0843174571537,0.50133791063589,1.01392563272577,0,0.486634870302636,0,0,0,0.0654895377488563,2.18577172975525,1.11235332835329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3082821564276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.427114777637135,0,0,0,0,0.18611685633159,0,0,0,0.0920498986422993,0,0.710019185033229,0.302256294682921,0,0.773043412653187,1.63647672354501,0.573609190778008,0,0,0,0,0,0,0,0,0,0,0.721879481669586,3.31259040111563,2.69735504124963,0.964044119533928,1.65440959098591,3.4860711054785,1.42362371466658,2.29213223872279,2.15843611637881,1.15424147083917,0,0,0,0,0,0,0,0,0.491953754172454,0,1.53650399572076,0,0.402115889646523,0.648119116109707,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0.503946384596579,0.567100388969546,0.806026704325635,0.290633938513962,0.766765358330422,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.909382714338778,1.66435439510497,2.41912234663744,0,0.153461973288062,0,0.128139149255701,0.511707249066704,0,0,0,0.177561725313127,0,0,0,0,1.40354529212299,0.552485933615378,0.34444334449382,0,0.393373244878272,0.451199612907412,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,1.95018073810956,0,0,0,0,0,0,0,0,0,0.495854746082934,0.768760269460425,0.127612712494584,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294747123039363,0,0,0,0,0,0,0.192444225451024,0.670302275535787,0,0.188287601553558,0.43050537267123,1.68471475667626,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0,0,0,0.334330152832435,0,4.05865624054073,2.37571744666111,9.21482106297696,0,0.140669416410513,0,0,0,0.398495976502139,0,0,0.102268682502155,0,0,0,1.07412704805365,0,0.197286811273867,0,0,0.969332746095218,0,0,0.260427761085233,1.83665999992011,0,0.341380344856499,0,2.36387681767936,0,0,0,0,0,0,0.110579259931225,0,0,0.653630781113941,4.87983104975112,0.846452843541768,0.113942055847001,0,0,0,1.5950057986596,0.366390373607449,1.06606955203727,0,0,0.166211681900156,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0.611030144933625,0,0,0,0.269604531922708,0.802577647298789,0,0,1.56531695145672,0,0.789168805698781,0,0.30607276163049,0.126373159256976,0,0,0,0,0,0,0,0.416024019039416,0.347119476670262,0.293977192243133,0.0870592065804026,0.34945333648406,0,0.870806981601766,0.65780385377567,0.410577285266046,0.678923115418936,0,0,0,0,0.0633107959558787,1.95551382734803,0,0,1.79828648623917,0,0,0,0,0,0.942776138467182,0.271808412147228,0.313808538937,0,0,0,0,0,0,0,0,0,0,2.79550600698588,0,0,0.0671834724867263,0,0,0.0787831823072236,0,0,0,0,0,0.272406812223151,0,0,0,0,1.5476039091159,0.121499113316049,1.0063040627978,0.157611414598396,0,0,0,0,0,0,0,0,0,0,0,0,0,0.566560457600628,0,0,0.129282956361551,0,0.342173675768659,0,0.427149650270779,0,0.414239055347196,0,0,0,3.19170628885091,0,0,0,0.327872630709804,0,0,0,0,0.573409195690071,0.665574309221114,0.248385611765534,0,0.249960815924213,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0.15543720058278,0,0,0,0,0,0.265841714557995,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28664954824955,0,0.226705925512272,0.231522474323834,0.244736704506468,0,0.926404341482917,1.31570429747224,0.176689145945881,0,0,0,0.690860683462397,0,0,0,0,0,0.327609848846413,0,0.211312123358627,0,0,0,0,0,0.699397538597222,1.24415452006595,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192687675289379,0,0,0,0,0,0,0,0.88332946650923,0.235939446695481,1.28400018965175,0,0.762764190934334,0,0,0.526472298444801,0,0,0,1.31017534008077,0.443568258651136,0.202612753855184,0,0,0.507326481551255,0,0,0.496211178389294,0.351742488719241,1.40538670403555,0,0,0,0,1.86274977341542,0,0,0.679697329768317,0.0657727735628491,0,0,0.39246546425257,0,1.12108865325516,0,0.215927591218621,0,0,0,0.116241425368125,0,0,1.03608082081518,0.85359238546975,0.691259661814092,0.430227358820278,0,0,0.423387050190929,0,0.31020638566432,0,0.111855431797792,0.294450700845729,0,0,0,0,0.485710993059139,0,0.397901550322736,0,0,0,0,0.0771741581079447,0,0,0,0,0,0.297046400327086,0,0.169927114687817,0,0,0,0.178553938605658,0,0,0,1.37618785021362,0,0,0.135982980381829,0.872701380680755,0,0,0.462175628631418,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0,0.213233981900981,0.23806443146374,0,0.0620747142958579,0.112131862580613,0,0,0.435433495793923,0.342233301085281,0.740872583160463,1.64961072403156,1.66330178273007,0.244209805832924,0,0,0,0,0.366724332548599,0.813792356631477,0,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0.872338524100369,2.53299878168311,0,0,0,0,1.09220686065086,1.58260186937072,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6024118375565,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0843174571537,0.50133791063589,1.01392563272577,0,0.486634870302636,0,0,0,0.0654895377488563,2.18577172975525,1.11235332835329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3082821564276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.427114777637135,0,0,0,0,0.18611685633159,0,0,0,0.0920498986422993,0,0.710019185033229,0.302256294682921,0,0.773043412653187,1.63647672354501,0.573609190778008,0,0,0,0,0,0,0,0,0,0,0.721879481669586,3.31259040111563,2.69735504124963,0.964044119533928,1.65440959098591,3.4860711054785,1.42362371466658,2.29213223872279,2.15843611637881,1.15424147083917,0,0,0,0,0,0,0,0,0.491953754172454,0,1.53650399572076,0,0.402115889646523,0.648119116109707,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0.503946384596579,0.567100388969546,0.806026704325635,0.290633938513962,0.766765358330422,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.909382714338778,1.66435439510497,2.41912234663744,0,0.153461973288062,0,0.128139149255701,0.511707249066704,0,0,0,0.177561725313127,0,0,0,0,1.40354529212299,0.552485933615378,0.34444334449382,0,0.393373244878272,0.451199612907412,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,1.95018073810956,0,0,0,0,0,0,0,0,0,0.495854746082934,0.768760269460425,0.127612712494584,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294747123039363,0,0,0,0,0,0,0.192444225451024,0.670302275535787,0,0.188287601553558,0.43050537267123,1.68471475667626,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0,0,0,0.334330152832435,0,4.05865624054073,2.37571744666111,9.21482106297696,0,0.140669416410513,0,0,0,0.398495976502139,0,0,0.102268682502155,0,0,0,1.07412704805365,0,0.197286811273867,0,0,0.969332746095218,0,0,0.260427761085233,1.83665999992011,0,0.341380344856499,0,2.36387681767936,0,0,0,0,0,0,0.110579259931225,0,0,0.653630781113941,4.87983104975112,0.846452843541768,0.113942055847001,0,0,0,1.5950057986596,0.366390373607449,1.06606955203727,0,0,0.166211681900156,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0.611030144933625,0,0,0,0.269604531922708,0.802577647298789,0,0,1.56531695145672,0,0.789168805698781,0,0.30607276163049,0.126373159256976,0,0,0,0,0,0,0,0.416024019039416,0.347119476670262,0.293977192243133,0.0870592065804026,0.34945333648406,0,0.870806981601766,0.65780385377567,0.410577285266046,0.678923115418936,0,0,0,0,0.0633107959558787,1.95551382734803,0,0,1.79828648623917,0,0,0,0,0,0.942776138467182,0.271808412147228,0.313808538937,0,0,0,0,0,0,0,0,0,0,2.79550600698588,0,0,0.0671834724867263,0,0,0.0787831823072236,0,0,0,0,0,0.272406812223151,0,0,0,0,1.5476039091159,0.121499113316049,1.0063040627978,0.157611414598396,0,0,0,0,0,0,0,0,0,0,0,0,0,0.566560457600628,0,0,0.129282956361551,0,0.342173675768659,0,0.427149650270779,0,0.414239055347196,0,0,0,3.19170628885091,0,0,0,0.327872630709804,0,0,0,0,0.573409195690071,0.665574309221114,0.248385611765534,0,0.249960815924213,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0.15543720058278,0,0,0,0,0,0.265841714557995,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28664954824955,0,0.226705925512272,0.231522474323834,0.244736704506468,0,0.926404341482917,1.31570429747224,0.176689145945881,0,0,0,0.690860683462397,0,0,0,0,0,0.327609848846413,0,0.211312123358627,0,0,0,0,0,0.699397538597222,1.24415452006595,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192687675289379,0,0,0,0,0,0,0,0.88332946650923,0.235939446695481,1.28400018965175,0,0.762764190934334,0,0,0.526472298444801,0,0,0,1.31017534008077,0.443568258651136,0.202612753855184,0,0,0.507326481551255,0,0,0.496211178389294,0.351742488719241,1.40538670403555,0,0,0,0,1.86274977341542,0,0,0.679697329768317,0.0657727735628491,0,0,0.39246546425257,0,1.12108865325516,0,0.215927591218621,0,0,0,0.116241425368125,0,0,1.03608082081518,0.85359238546975,0.691259661814092,0.430227358820278,0,0,0.423387050190929,0,0.31020638566432,0,0.111855431797792,0.294450700845729,0,0,0,0,0.485710993059139,0,0.397901550322736,0,0,0,0,0.0771741581079447,0,0,0,0,0,0.297046400327086,0,0.169927114687817,0,0,0,0.178553938605658,0,0,0,1.37618785021362,0,0,0.135982980381829,0.872701380680755,0,0,0.462175628631418,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0,0.213233981900981,0.23806443146374,0,0.0620747142958579,0.112131862580613,0,0,0.435433495793923,0.342233301085281,0.740872583160463,1.64961072403156,1.66330178273007,0.244209805832924,0,0,0,0,0.366724332548599,0.813792356631477,0,0.201273793591026,0 | ||
|short_description=p9@TRIM29 | |||
}} | }} |
Latest revision as of 04:52, 16 September 2015
Short description: | p9@TRIM29 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_TRIM29_5end |
Coexpression cluster: | C2102_amniotic_cervical_Placental_chorionic_Hep2_salivary_Corneal |
Association with transcript: | 0bp_to_ENST00000529044, ENST00000532195_5end |
EntrezGene: | TRIM29 |
HGNC: | 17274 |
UniProt: | E9PRL4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 8.22e-16 | 19 |
epithelial cell | 2.62e-10 | 253 |
corneal epithelial cell | 6.43e-09 | 2 |
amniotic epithelial cell | 1.17e-08 | 2 |
amnion mesenchymal stem cell | 1.93e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
larynx | 2.43e-28 | 9 |
extraembryonic membrane | 2.57e-27 | 14 |
membranous layer | 2.57e-27 | 14 |
extraembryonic structure | 4.32e-15 | 24 |
amnion | 1.03e-14 | 7 |
chorion | 2.92e-14 | 7 |
somatic layer of lateral plate mesoderm | 7.75e-13 | 8 |
upper respiratory tract | 1.05e-12 | 19 |
endoderm-derived structure | 1.43e-11 | 160 |
endoderm | 1.43e-11 | 160 |
presumptive endoderm | 1.43e-11 | 160 |
respiratory primordium | 7.10e-11 | 38 |
endoderm of foregut | 7.10e-11 | 38 |
placenta | 5.41e-10 | 4 |
allantois | 5.41e-10 | 4 |
open tracheal system trachea | 4.30e-09 | 2 |
digestive system | 7.31e-09 | 145 |
digestive tract | 7.31e-09 | 145 |
primitive gut | 7.31e-09 | 145 |
respiratory system | 7.96e-09 | 74 |
segment of respiratory tract | 2.31e-08 | 47 |
foregut | 4.09e-08 | 87 |
subdivision of digestive tract | 1.36e-07 | 118 |
respiratory tract | 5.36e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.40e-09 | 106 |