FFCP PHASE1:Hg19::chr12:105760414..105760433,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:105760414..105760433,- to FFCP PHASE1:Hg19::chr12:105760414..105760433,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr12:105760414..105760433,- | |||
|description=CAGE_peak_at_chr12:105760414..105760433,- | |||
|id=chr12:105760414..105760433,- | |||
|ontology_enrichment_celltype=CL:0000055!5.04e-19!180;CL:0000548!1.16e-13!679;CL:0000004!1.16e-13!679;CL:0000255!1.16e-13!679;CL:0000057!1.17e-13!75;CL:0000012!1.64e-13!682;CL:0002620!1.81e-12!23;CL:0000144!2.24e-12!625;CL:0000003!3.78e-11!722;CL:0002371!9.54e-11!591;CL:0000222!1.93e-09!119;CL:0000192!9.83e-09!42;CL:0000514!9.83e-09!42;CL:0000183!1.19e-08!59;CL:0000220!1.21e-07!246;CL:0000680!1.95e-07!57;CL:0000056!1.95e-07!57;CL:0000355!1.95e-07!57;CL:1000507!1.99e-07!12;CL:1000494!1.99e-07!12;CL:0002321!2.74e-07!248;CL:0000187!4.84e-07!54;CL:1000497!8.52e-07!18;CL:0002518!8.52e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0002620;7.36e-21;23!CL:1000507;9.06e-17;10!CL:1000494;9.06e-17;10!CL:1000449;4.01e-12;15!CL:1000497;2.49e-10;17!CL:0002518;2.49e-10;17!CL:0002681;2.94e-08;12!CL:0002584;2.94e-08;12!CL:0000057;1.24e-07;73!CL:0000134;2.47e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,5.98e-21,23;CL:1000507,9.12e-17,10;CL:1000494,9.12e-17,10;CL:0000057,3.29e-16,76;CL:1000449,3.77e-12,15;CL:1000497,2.36e-10,17;CL:0002518,2.36e-10,17;CL:0000048,2.68e-08,427;CL:0002681,2.71e-08,12;CL:0002584,2.71e-08,12;CL:0000723,7.07e-08,433;CL:0000034,2.44e-07,441 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;3.12e-08;5!DOID:450;3.12e-08;5!DOID:66;3.12e-08;5!DOID:423;3.12e-08;5!DOID:0080000;3.12e-08;5!DOID:11722;3.12e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,3.98e-08,5;DOID:450,3.98e-08,5;DOID:66,3.98e-08,5;DOID:423,3.98e-08,5;DOID:0080000,3.98e-08,5;DOID:11722,3.98e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0000486!4.39e-12!82;UBERON:0005256!2.96e-10!143;UBERON:0000914!4.03e-10!83;UBERON:0002329!4.03e-10!83;UBERON:0003077!4.03e-10!83;UBERON:0003059!4.03e-10!83;UBERON:0007282!4.03e-10!83;UBERON:0009618!4.03e-10!83;UBERON:0007285!4.03e-10!83;UBERON:0004290!1.65e-09!70;UBERON:0002199!2.37e-09!45;UBERON:0002416!2.37e-09!45;UBERON:0003102!1.81e-08!95;UBERON:0002097!3.38e-08!40;UBERON:0009773!1.99e-07!12;UBERON:0001231!1.99e-07!12;UBERON:0004810!1.99e-07!12;UBERON:0002100!6.58e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;9.06e-17;10!UBERON:0009773;9.06e-17;10!UBERON:0001231;9.06e-17;10!UBERON:0004810;9.06e-17;10!UBERON:0003102;1.99e-12;50!UBERON:0002097;2.35e-12;41!UBERON:0006555;4.01e-12;15!UBERON:0004819;4.01e-12;15!UBERON:0001285;4.01e-12;15!UBERON:0007684;4.01e-12;15!UBERON:0002199;1.25e-11;46!UBERON:0002416;1.25e-11;46!UBERON:0002067;3.45e-09;9!UBERON:0001225;2.94e-08;12!UBERON:0008987;2.94e-08;12!UBERON:0005631;8.53e-07;10!UBERON:0000158;8.53e-07;10!UBERON:0003891;8.87e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,7.73e-18,46;UBERON:0002416,7.73e-18,46;UBERON:0004810,9.12e-17,10;UBERON:0002097,6.27e-16,41;UBERON:0004211,3.77e-12,15;UBERON:0009773,3.77e-12,15;UBERON:0001231,3.77e-12,15;UBERON:0001285,3.77e-12,15;UBERON:0007684,3.77e-12,15;UBERON:0004208,3.77e-12,15;UBERON:0003102,7.67e-12,99;UBERON:0006555,3.40e-11,16;UBERON:0004819,3.40e-11,16;UBERON:0002067,8.57e-10,9;UBERON:0004016,8.57e-10,9;UBERON:0010083,8.57e-10,9;UBERON:0000486,2.26e-09,83;UBERON:0007503,4.92e-09,78;UBERON:0007524,1.63e-08,73;UBERON:0001225,2.71e-08,12;UBERON:0008987,2.71e-08,12;UBERON:0002329,5.14e-08,71;UBERON:0003059,5.14e-08,71;UBERON:0007282,5.14e-08,71;UBERON:0004290,5.14e-08,71;UBERON:0009618,5.14e-08,71;UBERON:0003077,8.25e-08,72;UBERON:0007285,8.25e-08,72 | |||
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| ||
|short_description=p@chr12:105760414..105760433,- | |||
}} | }} |
Latest revision as of 04:23, 24 July 2015
Short description: | p@chr12:105760414..105760433, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:105760414..105760433, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 5.98e-21 | 23 |
kidney tubule cell | 9.12e-17 | 10 |
nephron tubule epithelial cell | 9.12e-17 | 10 |
fibroblast | 3.29e-16 | 76 |
epithelial cell of nephron | 3.77e-12 | 15 |
kidney cell | 2.36e-10 | 17 |
kidney epithelial cell | 2.36e-10 | 17 |
multi fate stem cell | 2.68e-08 | 427 |
kidney cortical cell | 2.71e-08 | 12 |
renal cortical epithelial cell | 2.71e-08 | 12 |
somatic stem cell | 7.07e-08 | 433 |
stem cell | 2.44e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
integument | 7.73e-18 | 46 |
integumental system | 7.73e-18 | 46 |
nephron tubule epithelium | 9.12e-17 | 10 |
skin of body | 6.27e-16 | 41 |
nephron epithelium | 3.77e-12 | 15 |
renal tubule | 3.77e-12 | 15 |
nephron tubule | 3.77e-12 | 15 |
nephron | 3.77e-12 | 15 |
uriniferous tubule | 3.77e-12 | 15 |
nephrogenic mesenchyme | 3.77e-12 | 15 |
surface structure | 7.67e-12 | 99 |
excretory tube | 3.40e-11 | 16 |
kidney epithelium | 3.40e-11 | 16 |
dermis | 8.57e-10 | 9 |
dermatome | 8.57e-10 | 9 |
future dermis | 8.57e-10 | 9 |
multilaminar epithelium | 2.26e-09 | 83 |
epithelial vesicle | 4.92e-09 | 78 |
dense mesenchyme tissue | 1.63e-08 | 73 |
cortex of kidney | 2.71e-08 | 12 |
renal parenchyma | 2.71e-08 | 12 |
somite | 5.14e-08 | 71 |
presomitic mesoderm | 5.14e-08 | 71 |
presumptive segmental plate | 5.14e-08 | 71 |
dermomyotome | 5.14e-08 | 71 |
trunk paraxial mesoderm | 5.14e-08 | 71 |
paraxial mesoderm | 8.25e-08 | 72 |
presumptive paraxial mesoderm | 8.25e-08 | 72 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 3.98e-08 | 5 |
myotonic disease | 3.98e-08 | 5 |
muscle tissue disease | 3.98e-08 | 5 |
myopathy | 3.98e-08 | 5 |
muscular disease | 3.98e-08 | 5 |
myotonic dystrophy | 3.98e-08 | 5 |