FFCP PHASE1:Hg19::chr17:32690435..32690446,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:32690435..32690446,- to FFCP PHASE1:Hg19::chr17:32690435..32690446,-: NSchange) |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6346 | |EntrezGene=6346 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10609 | |HGNC=10609 | ||
|TSSclassifier=strong | |||
|UniProt=P22362 | |UniProt=P22362 | ||
|association_with_transcript=-183bp_to_NM_002981,uc002hid.1_5end | |||
|cluster_id=chr17:32690435..32690446,- | |||
|coexpression_cluster_id=C205 | |||
|description=CAGE_peak_3_at_CCL1_5end | |||
|id=chr17:32690435..32690446,- | |||
|ontology_enrichment_celltype=CL:0002057!4.22e-49!42;CL:0000860!1.45e-45!45;CL:0000839!4.54e-45!70;CL:0000557!2.23e-44!71;CL:0002194!5.78e-42!63;CL:0000576!5.78e-42!63;CL:0000040!5.78e-42!63;CL:0000559!5.78e-42!63;CL:0000766!3.47e-41!76;CL:0002009!1.48e-40!65;CL:0002031!5.89e-36!124;CL:0000763!2.34e-34!112;CL:0000049!2.34e-34!112;CL:0002032!2.83e-32!165;CL:0000837!2.83e-32!165;CL:0002087!4.36e-32!119;CL:0000738!2.86e-31!140;CL:0000037!9.54e-31!172;CL:0000566!9.54e-31!172;CL:0000988!9.14e-29!182;CL:0000134!6.96e-12!358;CL:0002320!1.52e-11!365;CL:0000219!2.38e-10!390;CL:0000048!6.44e-09!430;CL:0000723!1.03e-08!436;CL:0000034!1.89e-08!444;CL:0000946!4.34e-07!1;CL:0000786!4.34e-07!1;CL:0000980!4.34e-07!1 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.32e-46;33!CL:0002057;3.32e-46;33!CL:0000473;1.04e-28;39!CL:0000234;1.04e-28;39!CL:0000576;4.06e-22;48!CL:0000766;1.84e-15;69!CL:0002087;1.71e-08;104!CL:0000763;2.95e-08;100!CL:0000738;2.43e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.86e-39,42;CL:0002057,1.86e-39,42;CL:0000473,2.07e-34,48;CL:0000234,2.07e-34,48;CL:0000839,3.50e-29,66;CL:0000557,9.74e-29,67;CL:0002194,2.47e-27,59;CL:0000576,2.47e-27,59;CL:0000040,2.47e-27,59;CL:0000559,2.47e-27,59;CL:0000766,1.07e-26,72;CL:0002009,2.03e-26,61;CL:0002031,1.10e-21,120;CL:0002087,2.33e-19,115;CL:0000738,5.24e-19,136;CL:0000763,1.69e-17,108;CL:0000049,1.69e-17,108;CL:0002032,7.09e-16,161;CL:0000837,7.09e-16,161;CL:0000037,3.65e-15,168;CL:0000988,2.49e-14,177 | |||
|ontology_enrichment_development_v019=CL:0002057;6.60e-29;42 | |||
|ontology_enrichment_disease=DOID:0060060!6.59e-08!1;DOID:0060061!6.59e-08!1;DOID:8691!6.59e-08!1;DOID:9119!2.07e-07!1;DOID:2355!2.35e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:0060060;5.56e-16;1!DOID:0060061;5.56e-16;1!DOID:8691;5.56e-16;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060060,5.56e-16,1;DOID:0060061,5.56e-16,1;DOID:8691,5.56e-16,1 | |||
|ontology_enrichment_uberon=UBERON:0002371!6.47e-39!80;UBERON:0001474!6.69e-36!86;UBERON:0004765!6.50e-30!101;UBERON:0001434!6.50e-30!101;UBERON:0002390!1.41e-29!102;UBERON:0003061!1.41e-29!102;UBERON:0002193!1.57e-26!112;UBERON:0002405!1.01e-25!115;UBERON:0002204!2.97e-16!167;UBERON:0003081!1.76e-11!216;UBERON:0002384!4.40e-11!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.99e-25,76;UBERON:0001474,2.41e-23,82;UBERON:0004765,3.42e-21,90;UBERON:0002405,1.76e-20,93;UBERON:0002390,2.19e-19,98;UBERON:0003061,2.19e-19,98;UBERON:0001434,5.58e-19,100;UBERON:0002193,1.69e-17,108;UBERON:0002204,6.55e-11,167;UBERON:0003081,9.56e-09,203 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0.145398238779565,0,0,0.232429036905685,0,0,0.28769239232215,1.5369642391746,2.36482229888585,0.344745680736619,0,1.35426486594342,0,0,0.224723484445085,0,0.962787081228281,0,0,0.199463657621632,0,0.870627715885752,1.70215567407342,2.4912889959823,2.76373531782418,2.60741459210101,2.6062661364614,1.81619850790011,2.20966581592539,3.48108626184973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246217006087397,0.702012795417713,0.148631162288728,0,0,0,0,0,0,3.94130590316755,0.176096868026452,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33307196799782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8402114799552,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254019996197353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.79944541761692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0.145398238779565,0,0,0.232429036905685,0,0,0.28769239232215,1.5369642391746,2.36482229888585,0.344745680736619,0,1.35426486594342,0,0,0.224723484445085,0,0.962787081228281,0,0,0.199463657621632,0,0.870627715885752,1.70215567407342,2.4912889959823,2.76373531782418,2.60741459210101,2.6062661364614,1.81619850790011,2.20966581592539,3.48108626184973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246217006087397,0.702012795417713,0.148631162288728,0,0,0,0,0,0,3.94130590316755,0.176096868026452,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33307196799782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8402114799552,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254019996197353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.79944541761692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p3@CCL1 | |||
}} | }} |
Latest revision as of 13:57, 19 September 2015
Short description: | p3@CCL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CCL1_5end |
Coexpression cluster: | C205_mycosis_cord_hairy_xeroderma_CD4_B_b |
Association with transcript: | -183bp_to_NM_002981, uc002hid.1_5end |
EntrezGene: | CCL1 |
HGNC: | 10609 |
UniProt: | P22362 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.86e-39 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.86e-39 | 42 |
defensive cell | 2.07e-34 | 48 |
phagocyte | 2.07e-34 | 48 |
myeloid lineage restricted progenitor cell | 3.50e-29 | 66 |
granulocyte monocyte progenitor cell | 9.74e-29 | 67 |
monopoietic cell | 2.47e-27 | 59 |
monocyte | 2.47e-27 | 59 |
monoblast | 2.47e-27 | 59 |
promonocyte | 2.47e-27 | 59 |
myeloid leukocyte | 1.07e-26 | 72 |
macrophage dendritic cell progenitor | 2.03e-26 | 61 |
hematopoietic lineage restricted progenitor cell | 1.10e-21 | 120 |
nongranular leukocyte | 2.33e-19 | 115 |
leukocyte | 5.24e-19 | 136 |
myeloid cell | 1.69e-17 | 108 |
common myeloid progenitor | 1.69e-17 | 108 |
hematopoietic oligopotent progenitor cell | 7.09e-16 | 161 |
hematopoietic multipotent progenitor cell | 7.09e-16 | 161 |
hematopoietic stem cell | 3.65e-15 | 168 |
hematopoietic cell | 2.49e-14 | 177 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.99e-25 | 76 |
bone element | 2.41e-23 | 82 |
skeletal element | 3.42e-21 | 90 |
immune system | 1.76e-20 | 93 |
hematopoietic system | 2.19e-19 | 98 |
blood island | 2.19e-19 | 98 |
skeletal system | 5.58e-19 | 100 |
hemolymphoid system | 1.69e-17 | 108 |
musculoskeletal system | 6.55e-11 | 167 |
lateral plate mesoderm | 9.56e-09 | 203 |
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 5.56e-16 | 1 |
cutaneous T cell lymphoma | 5.56e-16 | 1 |
mycosis fungoides | 5.56e-16 | 1 |