FFCP PHASE1:Hg19::chr17:38256973..38256990,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:38256973..38256990,- to FFCP PHASE1:Hg19::chr17:38256973..38256990,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9572 | |EntrezGene=9572 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7962 | |HGNC=7962 | ||
|TSSclassifier=strong | |||
|UniProt=P20393,F1D8S3 | |UniProt=P20393,F1D8S3 | ||
|association_with_transcript=0bp_to_ENST00000246672,NM_021724,uc002htz.1,uc010cwq.1_5end | |||
|cluster_id=chr17:38256973..38256990,- | |||
|description=CAGE_peak_5_at_NR1D1_5end | |||
|id=chr17:38256973..38256990,- | |||
|ontology_enrichment_celltype=CL:0000838!9.70e-20!52;CL:0000542!2.25e-19!53;CL:0000051!2.25e-19!53;CL:0000084!2.00e-12!25;CL:0000827!2.00e-12!25;CL:0000791!5.51e-12!18;CL:0000789!5.51e-12!18;CL:0002420!5.51e-12!18;CL:0002419!5.51e-12!18;CL:0000790!5.51e-12!18;CL:0000988!5.21e-11!182;CL:0000037!6.45e-11!172;CL:0000566!6.45e-11!172;CL:0002032!4.09e-10!165;CL:0000837!4.09e-10!165;CL:0002087!3.82e-08!119;CL:0000738!6.38e-08!140;CL:0000625!8.96e-08!11;CL:0002031!1.99e-07!124;CL:0000945!2.66e-07!24;CL:0000826!2.66e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0000084;2.33e-13;25!CL:0000791;4.80e-13;18!CL:0000789;4.80e-13;18!CL:0002419;4.80e-13;18!CL:0000542;8.65e-11;53!CL:0000625;2.30e-08;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,1.65e-20,52;CL:0000542,3.97e-20,53;CL:0000051,3.97e-20,53;CL:0000084,3.37e-13,25;CL:0000827,3.37e-13,25;CL:0000037,5.92e-13,168;CL:0000988,6.05e-13,177;CL:0000791,1.00e-12,18;CL:0000789,1.00e-12,18;CL:0002420,1.00e-12,18;CL:0002419,1.00e-12,18;CL:0000790,1.00e-12,18;CL:0002032,6.14e-12,161;CL:0000837,6.14e-12,161;CL:0000738,6.99e-10,136;CL:0002087,1.26e-09,115;CL:0002031,8.83e-09,120;CL:0000625,3.23e-08,11;CL:0000945,2.77e-07,24;CL:0000826,2.77e-07,24 | |||
|ontology_enrichment_development_v019=CL:0000790;4.80e-13;18!CL:0000051;8.65e-11;53 | |||
|ontology_enrichment_disease=DOID:2531!3.14e-08!51;DOID:0060083!3.14e-08!51 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:2531,3.25e-08,51;DOID:0060083,3.25e-08,51 | |||
|ontology_enrichment_uberon=UBERON:0000178!5.26e-07!15;UBERON:0000179!5.26e-07!15;UBERON:0000463!5.26e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.27e-07;15!UBERON:0000179;2.27e-07;15!UBERON:0000463;2.27e-07;15!UBERON:0002390;5.10e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.14e-07,15;UBERON:0000179,2.14e-07,15;UBERON:0000463,2.14e-07,15 | |||
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| ||
|short_description=p5@NR1D1 | |||
}} | }} |
Latest revision as of 00:06, 20 September 2015
Short description: | p5@NR1D1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_NR1D1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000246672, NM_021724, uc002htz.1, uc010cwq.1_5end |
EntrezGene: | NR1D1 |
HGNC: | 7962 |
UniProt: | P20393F1D8S3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 1.65e-20 | 52 |
lymphocyte | 3.97e-20 | 53 |
common lymphoid progenitor | 3.97e-20 | 53 |
T cell | 3.37e-13 | 25 |
pro-T cell | 3.37e-13 | 25 |
hematopoietic stem cell | 5.92e-13 | 168 |
hematopoietic cell | 6.05e-13 | 177 |
mature alpha-beta T cell | 1.00e-12 | 18 |
alpha-beta T cell | 1.00e-12 | 18 |
immature T cell | 1.00e-12 | 18 |
mature T cell | 1.00e-12 | 18 |
immature alpha-beta T cell | 1.00e-12 | 18 |
hematopoietic oligopotent progenitor cell | 6.14e-12 | 161 |
hematopoietic multipotent progenitor cell | 6.14e-12 | 161 |
leukocyte | 6.99e-10 | 136 |
nongranular leukocyte | 1.26e-09 | 115 |
hematopoietic lineage restricted progenitor cell | 8.83e-09 | 120 |
CD8-positive, alpha-beta T cell | 3.23e-08 | 11 |
lymphocyte of B lineage | 2.77e-07 | 24 |
pro-B cell | 2.77e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
blood | 2.14e-07 | 15 |
haemolymphatic fluid | 2.14e-07 | 15 |
organism substance | 2.14e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 3.25e-08 | 51 |
immune system cancer | 3.25e-08 | 51 |