FFCP PHASE1:Hg19::chr17:39942286..39942313,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:39942286..39942313,- to FFCP PHASE1:Hg19::chr17:39942286..39942313,-: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3728 | |EntrezGene=3728 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6207 | |HGNC=6207 | ||
|TSSclassifier=strong | |||
|UniProt=C9JKY1 | |UniProt=C9JKY1 | ||
|association_with_transcript=8bp_to_ENST00000449889_5end | |||
|cluster_id=chr17:39942286..39942313,- | |||
|coexpression_cluster_id=C226 | |||
|description=CAGE_peak_3_at_JUP_5end | |||
|id=chr17:39942286..39942313,- | |||
|ontology_enrichment_celltype=CL:0000066!2.35e-44!254;CL:0002076!8.98e-17!43;CL:0000223!1.89e-13!59;CL:0000076!2.20e-11!62;CL:0002251!2.13e-08!21;CL:0000220!4.98e-08!246;CL:0002321!7.17e-08!248;CL:0002368!7.33e-08!13 | |||
|ontology_enrichment_celltype_v019=CL:0002076;2.12e-18;42!CL:0002251;3.37e-13;20!CL:0002368;5.00e-11;13!CL:1000449;9.16e-10;15!CL:0002159;2.75e-08;14!CL:1000497;4.27e-08;17!CL:0002518;4.27e-08;17!CL:0002681;4.52e-08;12!CL:0002584;4.52e-08;12!CL:1000507;1.02e-07;10!CL:1000494;1.02e-07;10!CL:0002202;1.68e-07;9!CL:0002632;1.68e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.75e-45,253;CL:0002076,5.15e-24,42;CL:0000223,1.03e-15,58;CL:0002251,3.45e-13,20;CL:0002368,7.16e-11,13;CL:0000076,2.91e-10,63;CL:1000449,1.47e-09,15;CL:0002321,1.20e-08,250;CL:0002159,3.83e-08,14;CL:1000497,6.36e-08,17;CL:0002518,6.36e-08,17;CL:0002681,7.58e-08,12;CL:0002584,7.58e-08,12;CL:1000507,1.04e-07,10;CL:1000494,1.04e-07,10;CL:0002202,2.45e-07,9;CL:0002632,2.45e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000223;2.30e-08;58 | |||
|ontology_enrichment_disease=DOID:305!1.23e-16!106;DOID:0050687!1.19e-09!143;DOID:1749!4.00e-08!14;DOID:299!1.71e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.02e-08;14!DOID:299;7.33e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.26e-13,106;DOID:1749,8.25e-09,14;DOID:0050687,1.63e-07,143;DOID:299,5.88e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!7.13e-16!169;UBERON:0000925!7.13e-16!169;UBERON:0006595!7.13e-16!169;UBERON:0001004!3.39e-14!72;UBERON:0000065!8.10e-12!53;UBERON:0000077!8.90e-12!130;UBERON:0001007!9.57e-12!155;UBERON:0001555!9.57e-12!155;UBERON:0007026!9.57e-12!155;UBERON:0004921!6.94e-11!129;UBERON:0004185!6.94e-11!129;UBERON:0000072!6.84e-10!46;UBERON:0001041!1.33e-09!98;UBERON:0003104!1.71e-09!238;UBERON:0009142!1.71e-09!238;UBERON:0001008!3.22e-09!45;UBERON:0006554!5.50e-09!44;UBERON:0008947!6.94e-09!38;UBERON:0003258!6.94e-09!38;UBERON:0000926!9.32e-09!448;UBERON:0004120!9.32e-09!448;UBERON:0006603!9.32e-09!448;UBERON:0000464!1.00e-08!104;UBERON:0000161!3.07e-08!35;UBERON:0000468!4.71e-08!659;UBERON:0001048!4.79e-08!168;UBERON:0000467!5.34e-08!625;UBERON:0000466!5.67e-08!126;UBERON:0000480!7.57e-08!626;UBERON:0000922!1.09e-07!612;UBERON:0005911!1.41e-07!82;UBERON:0003064!1.44e-07!37;UBERON:0002050!2.13e-07!605;UBERON:0005423!2.13e-07!605;UBERON:0003914!2.30e-07!118;UBERON:0001557!2.66e-07!19;UBERON:0000477!3.35e-07!286;UBERON:0000923!3.86e-07!604;UBERON:0005291!3.86e-07!604;UBERON:0006598!3.86e-07!604;UBERON:0002532!3.86e-07!604;UBERON:0002049!8.46e-07!79;UBERON:0007798!8.46e-07!79 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;3.53e-11;30!UBERON:0001008;3.53e-11;30!UBERON:0006555;9.16e-10;15!UBERON:0004819;9.16e-10;15!UBERON:0001285;9.16e-10;15!UBERON:0007684;9.16e-10;15!UBERON:0001737;1.19e-08;9!UBERON:0001557;1.19e-08;9!UBERON:0000065;1.80e-08;44!UBERON:0000072;3.93e-08;37!UBERON:0001225;4.52e-08;12!UBERON:0008987;4.52e-08;12!UBERON:0002113;7.52e-08;24!UBERON:0011143;7.52e-08;24!UBERON:0004211;1.02e-07;10!UBERON:0009773;1.02e-07;10!UBERON:0001231;1.02e-07;10!UBERON:0004810;1.02e-07;10!UBERON:0005911;1.03e-07;36!UBERON:0001851;4.85e-07;15!UBERON:0000353;5.90e-07;15!UBERON:0001004;9.88e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001004,7.21e-16,74;UBERON:0004119,6.14e-14,160;UBERON:0000925,6.14e-14,160;UBERON:0006595,6.14e-14,160;UBERON:0000065,3.87e-13,54;UBERON:0000072,8.31e-12,47;UBERON:0001041,2.18e-10,87;UBERON:0001008,4.14e-10,48;UBERON:0001557,8.17e-10,19;UBERON:0001007,8.21e-10,145;UBERON:0001555,8.21e-10,145;UBERON:0007026,8.21e-10,145;UBERON:0006554,8.46e-10,47;UBERON:0004211,1.47e-09,15;UBERON:0009773,1.47e-09,15;UBERON:0001231,1.47e-09,15;UBERON:0001285,1.47e-09,15;UBERON:0007684,1.47e-09,15;UBERON:0004208,1.47e-09,15;UBERON:0008947,3.26e-09,38;UBERON:0003258,3.26e-09,38;UBERON:0004921,4.15e-09,118;UBERON:0006555,1.10e-08,16;UBERON:0004819,1.10e-08,16;UBERON:0001737,1.13e-08,9;UBERON:0001225,7.58e-08,12;UBERON:0008987,7.58e-08,12;UBERON:0004810,1.04e-07,10;UBERON:0000166,2.34e-07,22;UBERON:0003103,3.08e-07,68;UBERON:0000161,6.72e-07,36;UBERON:0001851,7.42e-07,15;UBERON:0000353,8.27e-07,15;UBERON:0002113,9.88e-07,26;UBERON:0003918,9.88e-07,26;UBERON:0011143,9.88e-07,26;UBERON:0005095,9.88e-07,26;UBERON:0007687,9.88e-07,26 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,9.33788958705734,13.9560233594486,2.40285509343189,3.9565046734268,0.74259811776028,1.32558950291166,1.34465029290355,0,0,0,0.246242116153576,0.408001382488506,0.313454721478088,0,0,0,0.0764134057479513,0.0821005894499457,0,0,0,2.78669021968937,22.9855306119732,23.1928557459253,25.8827807116751,0,0,0,0,1.40381113229099,0,0,0,0,0,0,3.88134497900506,0,0,0.619412741790207,0,0.256160706529101,0.236482229888585,0,0,0,0.188242339542605,0,1.79778787556068,0,0,1.27867425159808,0,0.199463657621632,2.13112375266347,0,0,0.622822248995575,0.502497330513487,0.521482918420201,0,0.605399502633369,0,0.949387162322653,0.211255286311942,0.212604299965044,0.209658645508376,0,0,0,0,0.19891667719909,0.365328307529268,0,1.09227722252426,0.889509253863555,0.426730222566507,1.60158394814405,0.574752439954483,0.661044872784862,2.86216126360609,1.70763890732835,0,0.382273228125229,1.32171328579026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.661743720148475,1.33037638477538,0.966182642624386,1.17881167947941,34.6080523877915,32.6290309650298,0,0,0.398873881556595,0.238490624305342,0,0,1.39133685156694,1.72046919021225,2.77712401286075,1.13061588384802,2.09749718104953,0.550236083880135,0.626984899610432,2.58416759169329,2.13459757612026,1.33888245105868,3.22263453687318,4.56163263431108,8.05404789908959,1.10298924103761,0,0.17859945656816,0.22452937262617,0.675668882899933,1.53316637465883,1.89853131913626,0.916008719652036,0,0,31.834865806405,0,0.12663051166458,0,0,0,0,1.06748995729705,2.22000793575444,0,1.0776853765575,0.326923806226917,0.151357427644931,0,0,0,0.570471821544449,0,0,0,0,0,0,0.206651562351531,0,0,0,0.718618141816238,0,0.125118519871964,0,0,0,0,0.226864366320042,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169560592310488,20.6789112884728,13.9100521501326,14.9138389602282,0,0.265059536642971,0.116193942869518,0.310983165046111,1.00928340350251,0,0,0,0,0,0,6.38856720215157,6.74338760312407,6.98931986662098,5.84558055481688,7.40790109914181,5.93176547777742,9.43819157121151,7.45641567476315,8.0796902958742,0.738155454624648,2.80483547606892,0,0,0,0,0.590789906681404,0,2.09080345523293,1.71567810298526,40.8271061720087,17.9842805212191,9.4497234066933,10.7402596383894,0,0,1.44331342025273,0,1.6437217193015,1.73239737313289,0.925971025153221,1.71228737011138,8.69224837755203,1.71697232418975,0.492434012174795,0.234004265139238,0,12.185398418281,8.06314215354526,10.0660319042094,11.3739323832617,10.4628217865026,16.8688378832693,0.492663237895943,0.264145302039678,0.829312462163088,0.576479813667846,1.13618190083742,0,0,0,0,0,0,0,0.336393253036082,0,0.07333828582095,0.646358578788889,0,0,0.531876233169741,1.04007436911366,0,0,0,0,0,0,0,0,0,4.82303003295338,2.61460037580088,6.19832545328754,1.2162378064119,0,2.10833939483032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.49076596687656,0.500170521059677,0.542530047399471,0,0,0,0,0,0,0,0,0.368738337083406,0,0.195801157462741,0,0,0.215714200818617,0.320182673410333,2.12189300012382,3.32870879020994,2.72151263996712,0,0,0.280660094433074,0,0,0,1.48418066444991,0,0,0,0.519254429183621,0,2.41718899183244,17.2435564460825,19.52116965441,0.918515585316854,0.182091168006717,0.786746489756545,11.7311899355927,3.92778219232515,4.70609861506113,2.92278449306521,2.11103257785751,1.13733384070897,1.19065593693561,1.0795795805107,1.54227252690289,2.43851793789468,2.00675909541941,4.58777291481069,6.64860807142979,2.46262230194396,0,0,0,1.31205858279882,0.325378394664303,0.103041011647722,0,0,32.7331356657818,27.3025303335339,0,0,0,0,0,0,0,0.0852266274161009,0,14.7103574671271,11.7235941092715,6.89108647470754,15.5782982517547,0,0,0.6970372701606,1.54016790088044,1.59691809095107,0,2.96518750566272,0.286249773483982,0.372158369359667,0.632758849437452,0.571890581771475,0,0,0.318203247925937,3.92474320099615,0.179872457583315,0,0.235624804691373,3.841467149893,1.58510321173008,0.842516912477962,0,1.21856744815642,3.16950440270266,0,0.282810863907425,2.26016233240486,1.10273068709225,5.97095077717098,4.38450885253763,0.578775534266688,0,4.46402829317949,0.92947049429925,1.12678241012897,0,0,3.5667105148125,0,0,0,0,0.699869440489966,16.5502033887881,20.7793705416094,16.3336477291984,0,27.1218384782875,26.9554361068201,23.9452282909805,11.7158934105549,0,0,0.569647187174163,0.476463550915578,0.411362273086194,0,0,0,0.320472213382419,1.92495971052672,1.71528151186722,0,0.28853842595289,0,0,0.59873811429845,1.7235483311913,0.211673582723883,0.973865820823666,0.280797178113459,0.912938716132769,0,0,0.846458889008016,0,0,0,0,0,0,0,0,0,2.46174797895425,0,0,4.22961015263549,0.935702702041099,0.293016358543788,0.242721043499027,0,0,8.11731248108146,1.48482340416319,8.29333895667927,0,0.140669416410513,0,0,0.63337622438398,0.796991953004279,0.276283915531148,0.503865495708552,0,0.123084805461069,0,4.85289096195565,3.04335996948536,0,0.591860433821602,0,0,0,0,0,5.4689829827899,1.66173999992772,0.724999575434793,9.78623655255297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| ||
|short_description=p3@JUP | |||
}} | }} |
Latest revision as of 07:17, 20 September 2015
Short description: | p3@JUP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_JUP_5end |
Coexpression cluster: | C226_Corneal_Keratinocyte_Esophageal_Urothelial_Mammary_Bronchial_Tracheal |
Association with transcript: | 8bp_to_ENST00000449889_5end |
EntrezGene: | JUP |
HGNC: | 6207 |
UniProt: | C9JKY1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.75e-45 | 253 |
endo-epithelial cell | 5.15e-24 | 42 |
endodermal cell | 1.03e-15 | 58 |
epithelial cell of alimentary canal | 3.45e-13 | 20 |
respiratory epithelial cell | 7.16e-11 | 13 |
squamous epithelial cell | 2.91e-10 | 63 |
epithelial cell of nephron | 1.47e-09 | 15 |
embryonic cell | 1.20e-08 | 250 |
general ecto-epithelial cell | 3.83e-08 | 14 |
kidney cell | 6.36e-08 | 17 |
kidney epithelial cell | 6.36e-08 | 17 |
kidney cortical cell | 7.58e-08 | 12 |
renal cortical epithelial cell | 7.58e-08 | 12 |
kidney tubule cell | 1.04e-07 | 10 |
nephron tubule epithelial cell | 1.04e-07 | 10 |
epithelial cell of tracheobronchial tree | 2.45e-07 | 9 |
epithelial cell of lower respiratory tract | 2.45e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.26e-13 | 106 |
squamous cell carcinoma | 8.25e-09 | 14 |
cell type cancer | 1.63e-07 | 143 |
adenocarcinoma | 5.88e-07 | 25 |