FFCP PHASE1:Hg19::chr17:76356237..76356282,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:76356237..76356282,- to FFCP PHASE1:Hg19::chr17:76356237..76356282,-: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9021 | |EntrezGene=9021 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19391 | |HGNC=19391 | ||
|TSSclassifier=strong | |||
|UniProt=O14543,Q6FI39 | |UniProt=O14543,Q6FI39 | ||
|association_with_transcript=-79bp_to_ENST00000330871,NM_003955,uc002jvl.2_5end | |||
|cluster_id=chr17:76356237..76356282,- | |||
|coexpression_cluster_id=C890 | |||
|description=CAGE_peak_2_at_SOCS3_5end | |||
|id=chr17:76356237..76356282,- | |||
|ontology_enrichment_celltype=CL:0002057!1.21e-18!42;CL:0000860!1.38e-18!45;CL:0000738!3.17e-15!140;CL:0000766!3.81e-15!76;CL:0002009!7.63e-12!65;CL:0000557!1.34e-11!71;CL:0002194!6.61e-11!63;CL:0000576!6.61e-11!63;CL:0000040!6.61e-11!63;CL:0000559!6.61e-11!63;CL:0000839!3.44e-10!70;CL:0002087!4.36e-10!119;CL:0002031!1.07e-09!124;CL:0000037!2.44e-07!172;CL:0000566!2.44e-07!172;CL:0000988!3.35e-07!182 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.67e-19;33!CL:0002057;6.67e-19;33!CL:0000473;4.53e-15;39!CL:0000234;4.53e-15;39!CL:0000576;1.16e-14;48!CL:0000766;1.98e-13;69!CL:0000094;7.78e-13;8!CL:0000624;4.11e-11;6!CL:0000081;8.38e-11;11!CL:0002393;4.76e-10;6!CL:0002397;4.76e-10;6!CL:0002087;2.49e-08;104!CL:0000738;6.84e-08;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,3.37e-38,136;CL:0000766,5.99e-30,72;CL:0000860,9.42e-28,42;CL:0002057,9.42e-28,42;CL:0000988,3.31e-27,177;CL:0000037,9.13e-27,168;CL:0002031,7.70e-25,120;CL:0000473,1.86e-24,48;CL:0000234,1.86e-24,48;CL:0002087,3.00e-24,115;CL:0002032,6.78e-23,161;CL:0000837,6.78e-23,161;CL:0000557,1.10e-22,67;CL:0002009,4.05e-21,61;CL:0000839,3.68e-20,66;CL:0002194,4.45e-19,59;CL:0000576,4.45e-19,59;CL:0000040,4.45e-19,59;CL:0000559,4.45e-19,59;CL:0000763,1.53e-18,108;CL:0000049,1.53e-18,108;CL:0000094,8.17e-13,8;CL:0000624,4.09e-11,6;CL:0000081,1.01e-10,11;CL:0002320,5.45e-09,361;CL:0002393,2.32e-08,9;CL:0002397,2.32e-08,9;CL:0000134,2.71e-08,354 | |||
|ontology_enrichment_development_v019=CL:0002057;1.78e-20;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.70e-09!80;UBERON:0002390!2.49e-09!102;UBERON:0003061!2.49e-09!102;UBERON:0001474!3.56e-09!86;UBERON:0002193!3.75e-09!112;UBERON:0002405!5.16e-07!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.74e-20,98;UBERON:0003061,2.74e-20,98;UBERON:0002371,1.30e-18,76;UBERON:0002193,4.26e-18,108;UBERON:0002405,4.85e-18,93;UBERON:0001474,2.13e-17,82;UBERON:0004765,1.08e-15,90;UBERON:0001434,5.62e-13,100;UBERON:0002384,1.79e-09,371;UBERON:0003081,1.37e-07,203 | |||
|phase1_expression=0.363356758541113,0.214100523890983,0,1.0007329835313,0,0.872338524100369,0,0,0,0,0,0,0,0.247532705920093,0,0,0,0,0,0.492484232307152,0.816002764977012,0.313454721478088,0.572471974262113,0.410623275218653,0.753255837568817,0.687720651731561,0.656804715599566,0.472264687882075,13.3743854128627,6.1412703695554,5.10893206943051,0.919421224478927,0,0.369754010166788,0,0,0.293600439334847,9.97191735357379,14.4392002178502,14.3227174672462,0.447830948479849,0,0,0.872389432677388,1.13362783106643,2.42584061187816,3.25400651667958,2.87817521615278,2.78735733805593,4.02769349251011,0.768482119587302,1.18241114944293,4.48169384957604,4.51839278508678,5.41705946377367,1.12945403725563,1.36453075028923,2.24723484445085,3.36692281607993,0.641858054152187,2.55734850319616,1.64925650093358,0.997318288108159,0.852449501065388,1.16083695451434,0,1.24564449799115,2.00998932205395,2.60741459210101,1.52032191293582,3.63239701580021,0.368277635987565,0.632924774881769,7.6051903072299,5.74031609905618,4.61249020118427,10.89587722121,7.2084908563923,6.26829788118613,1.99508920618874,0.99458338599545,0.547992461293902,0,0,0,0,0.400395987036012,0,0,0,11.9534723512984,49.3279239071589,43.5791480062761,1.32171328579026,3.92355994087075,0.790152254325231,17.3104597700173,28.689785680689,32.2794353429229,0,22.8145586643513,19.8848078408588,13.6378709885538,0.222820913770347,13.8464776513173,11.2982286237647,7.31170432165542,0.384273959177026,0.260118695119756,0.164437904603676,0,0.289803085735052,23.5775635427676,12.8419597483062,13.589618094647,0,14.1791582632711,9.62156847351364,8.6026695286631,0,0,0,0.301150238155546,0.127986611154418,0,0,0,9.87873041801189,12.5696892018248,16.5099820426391,0,2.01210257911091,0.255725123687061,0,0.50133791063589,0.434539556882471,0.795285947051099,0,0.567208902984407,0.886917589850256,0.702678285545008,0.261958150995425,0,0,0,0,0.132957960518865,28.1418936680304,10.2959083940423,13.0010125465348,0,0,0,0,0.838998872419812,0,0.417989933073621,0.258416759169329,0.35576626268671,0,0,0.760272105718513,0.488124115096339,0,0,0.0892997282840798,0.22452937262617,0.337834441449967,0,0.949265659568129,0.183201743930407,5.27121669744253,11.6334079244498,0,1.49091585508596,0.12663051166458,0.132409180813219,0,1.06400514659507,0,1.06748995729705,0,0.622422070799533,0.134710672069688,0.163461903113459,0.605429710579726,1.15235184896,0.468642863667593,0.312160076830321,0.570471821544449,0.448346041655403,0.23486899728753,0.809364721840658,0.280901613404497,0,0.245668634623536,0.309977343527296,0,0.247266929278557,0,0,0.336672227908132,0.375355559615893,0,0,0,0.150238058906597,0,0.179389635688862,0.213557388818567,0.211931901159562,0,0.206105058476878,0,0,0.168776332241266,0.389748020644795,0,0,0,0.710019185033229,0.302256294682921,0,0.193260853163297,0,0,0.365921118388786,0.397589304964456,0.580969714347592,0.621966330092223,0.504641701751257,0.72995471815166,0,1.28648187638577,0,0,0.721879481669586,0.354920400119532,0.505754070234305,0.482022059766964,0.55146986366197,0.653638332277218,0.237270619111097,0.269662616320329,0.588664395376038,0.38474715694639,0,0,0,0,0,0,0,0,0.122988438543114,0.343135620597051,0,0,0,0.0925884451585296,0,1.03993478527958,0,0,0.117408694235822,0.433099343283221,0.925971025153221,0.570762456703795,1.58040879591855,2.57545848628462,0,0,0,0,0,0.141775097242386,0.0895585227028483,0,0.383382679165211,0,0,7.67114027500857,5.76479813667846,9.97315224068402,0.190493682876507,0.381988425558278,0,0,0.205654985406647,0,0,0.336393253036082,0.87192013766656,0.4400297149257,0.387815147273333,0,0.845302752556,0,0,0,0,0.532844358032199,0.714889968290738,0,0,0,0,0,0,0,0,0,1.00451418286425,0,0,1.14861935834114,0,0,0.410952645100767,0.179060963239896,0,10.0485687702983,13.1532820664306,12.5776175554153,0,1.30139853857622,1.54657762555539,0.502548796003046,0.637938751653163,4.49404214368309,17.9496875522415,12.8468809165171,0.12269149171914,1.00034104211935,0.271265023699736,0.207970861530807,0.356857977594324,0.630809660135739,0,0.300946099727719,0,0,0,0.184369168541703,0.173767228936166,1.95801157462741,1.37257369524342,12.6128495934961,12.2957094466612,25.7213414306301,0.909382714338778,0,0,0,0.767309866440312,0.280660094433074,0.384417447767103,0.511707249066704,0.482561763430822,0,0.308419387605311,0.355123450626254,0.246381468041427,0,0.348631135379878,0.362578348774867,0.200506470303285,0.0920809889358963,0.114814448164607,0.364182336013434,0,0,0.0770153371044148,0.784349769176855,0,0.422206515571503,0,0,0.863663664408557,3.08454505380579,0.541892875087706,0.501689773854853,0.254876273045038,0,0.895499018888713,0,0,0.256450125116389,0,0,0.515205058238611,1.09883357782012,0.82509499920588,0,0,0,0.290012154876366,0.770243085573222,0.460511024178389,0.964856007391714,0.107420244868274,0,0.511359764496605,0.801288320820636,0.495854746082934,0,0.127612712494584,0.4046311234222,0,0.31481234683064,0,0,0.532306030317022,0,0.37064843820784,0,0,0.316379424718726,0.762520775695299,0.5117955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|phase1_expression=0.363356758541113,0.214100523890983,0,1.0007329835313,0,0.872338524100369,0,0,0,0,0,0,0,0.247532705920093,0,0,0,0,0,0.492484232307152,0.816002764977012,0.313454721478088,0.572471974262113,0.410623275218653,0.753255837568817,0.687720651731561,0.656804715599566,0.472264687882075,13.3743854128627,6.1412703695554,5.10893206943051,0.919421224478927,0,0.369754010166788,0,0,0.293600439334847,9.97191735357379,14.4392002178502,14.3227174672462,0.447830948479849,0,0,0.872389432677388,1.13362783106643,2.42584061187816,3.25400651667958,2.87817521615278,2.78735733805593,4.02769349251011,0.768482119587302,1.18241114944293,4.48169384957604,4.51839278508678,5.41705946377367,1.12945403725563,1.36453075028923,2.24723484445085,3.36692281607993,0.641858054152187,2.55734850319616,1.64925650093358,0.997318288108159,0.852449501065388,1.16083695451434,0,1.24564449799115,2.00998932205395,2.60741459210101,1.52032191293582,3.63239701580021,0.368277635987565,0.632924774881769,7.6051903072299,5.74031609905618,4.61249020118427,10.89587722121,7.2084908563923,6.26829788118613,1.99508920618874,0.99458338599545,0.547992461293902,0,0,0,0,0.400395987036012,0,0,0,11.9534723512984,49.3279239071589,43.5791480062761,1.32171328579026,3.92355994087075,0.790152254325231,17.3104597700173,28.689785680689,32.2794353429229,0,22.8145586643513,19.8848078408588,13.6378709885538,0.222820913770347,13.8464776513173,11.2982286237647,7.31170432165542,0.384273959177026,0.260118695119756,0.164437904603676,0,0.289803085735052,23.5775635427676,12.8419597483062,13.589618094647,0,14.1791582632711,9.62156847351364,8.6026695286631,0,0,0,0.301150238155546,0.127986611154418,0,0,0,9.87873041801189,12.5696892018248,16.5099820426391,0,2.01210257911091,0.255725123687061,0,0.50133791063589,0.434539556882471,0.795285947051099,0,0.567208902984407,0.886917589850256,0.702678285545008,0.261958150995425,0,0,0,0,0.132957960518865,28.1418936680304,10.2959083940423,13.0010125465348,0,0,0,0,0.838998872419812,0,0.417989933073621,0.258416759169329,0.35576626268671,0,0,0.760272105718513,0.488124115096339,0,0,0.0892997282840798,0.22452937262617,0.337834441449967,0,0.949265659568129,0.183201743930407,5.27121669744253,11.6334079244498,0,1.49091585508596,0.12663051166458,0.132409180813219,0,1.06400514659507,0,1.06748995729705,0,0.622422070799533,0.134710672069688,0.163461903113459,0.605429710579726,1.15235184896,0.468642863667593,0.312160076830321,0.570471821544449,0.448346041655403,0.23486899728753,0.809364721840658,0.280901613404497,0,0.245668634623536,0.309977343527296,0,0.247266929278557,0,0,0.336672227908132,0.375355559615893,0,0,0,0.150238058906597,0,0.179389635688862,0.213557388818567,0.211931901159562,0,0.206105058476878,0,0,0.168776332241266,0.389748020644795,0,0,0,0.710019185033229,0.302256294682921,0,0.193260853163297,0,0,0.365921118388786,0.397589304964456,0.580969714347592,0.621966330092223,0.504641701751257,0.72995471815166,0,1.28648187638577,0,0,0.721879481669586,0.354920400119532,0.505754070234305,0.482022059766964,0.55146986366197,0.653638332277218,0.237270619111097,0.269662616320329,0.588664395376038,0.38474715694639,0,0,0,0,0,0,0,0,0.122988438543114,0.343135620597051,0,0,0,0.0925884451585296,0,1.03993478527958,0,0,0.117408694235822,0.433099343283221,0.925971025153221,0.570762456703795,1.58040879591855,2.57545848628462,0,0,0,0,0,0.141775097242386,0.0895585227028483,0,0.383382679165211,0,0,7.67114027500857,5.76479813667846,9.97315224068402,0.190493682876507,0.381988425558278,0,0,0.205654985406647,0,0,0.336393253036082,0.87192013766656,0.4400297149257,0.387815147273333,0,0.845302752556,0,0,0,0,0.532844358032199,0.714889968290738,0,0,0,0,0,0,0,0,0,1.00451418286425,0,0,1.14861935834114,0,0,0.410952645100767,0.179060963239896,0,10.0485687702983,13.1532820664306,12.5776175554153,0,1.30139853857622,1.54657762555539,0.502548796003046,0.637938751653163,4.49404214368309,17.9496875522415,12.8468809165171,0.12269149171914,1.00034104211935,0.271265023699736,0.207970861530807,0.356857977594324,0.630809660135739,0,0.300946099727719,0,0,0,0.184369168541703,0.173767228936166,1.95801157462741,1.37257369524342,12.6128495934961,12.2957094466612,25.7213414306301,0.909382714338778,0,0,0,0.767309866440312,0.280660094433074,0.384417447767103,0.511707249066704,0.482561763430822,0,0.308419387605311,0.355123450626254,0.246381468041427,0,0.348631135379878,0.362578348774867,0.200506470303285,0.0920809889358963,0.114814448164607,0.364182336013434,0,0,0.0770153371044148,0.784349769176855,0,0.422206515571503,0,0,0.863663664408557,3.08454505380579,0.541892875087706,0.501689773854853,0.254876273045038,0,0.895499018888713,0,0,0.256450125116389,0,0,0.515205058238611,1.09883357782012,0.82509499920588,0,0,0,0.290012154876366,0.770243085573222,0.460511024178389,0.964856007391714,0.107420244868274,0,0.511359764496605,0.801288320820636,0.495854746082934,0,0.127612712494584,0.4046311234222,0,0.31481234683064,0,0,0.532306030317022,0,0.37064843820784,0,0,0.316379424718726,0.762520775695299,0.5117955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| ||
|short_description=p2@SOCS3 | |||
}} | }} |
Latest revision as of 21:27, 17 September 2015
Short description: | p2@SOCS3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SOCS3_5end |
Coexpression cluster: | C890_CD19_CD4_Peripheral_CD8_Natural_Dendritic_Mast |
Association with transcript: | -79bp_to_ENST00000330871, NM_003955, uc002jvl.2_5end |
EntrezGene: | SOCS3 |
HGNC: | 19391 |
UniProt: | O14543Q6FI39 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 3.37e-38 | 136 |
myeloid leukocyte | 5.99e-30 | 72 |
classical monocyte | 9.42e-28 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.42e-28 | 42 |
hematopoietic cell | 3.31e-27 | 177 |
hematopoietic stem cell | 9.13e-27 | 168 |
hematopoietic lineage restricted progenitor cell | 7.70e-25 | 120 |
defensive cell | 1.86e-24 | 48 |
phagocyte | 1.86e-24 | 48 |
nongranular leukocyte | 3.00e-24 | 115 |
hematopoietic oligopotent progenitor cell | 6.78e-23 | 161 |
hematopoietic multipotent progenitor cell | 6.78e-23 | 161 |
granulocyte monocyte progenitor cell | 1.10e-22 | 67 |
macrophage dendritic cell progenitor | 4.05e-21 | 61 |
myeloid lineage restricted progenitor cell | 3.68e-20 | 66 |
monopoietic cell | 4.45e-19 | 59 |
monocyte | 4.45e-19 | 59 |
monoblast | 4.45e-19 | 59 |
promonocyte | 4.45e-19 | 59 |
myeloid cell | 1.53e-18 | 108 |
common myeloid progenitor | 1.53e-18 | 108 |
granulocyte | 8.17e-13 | 8 |
CD4-positive, alpha-beta T cell | 4.09e-11 | 6 |
blood cell | 1.01e-10 | 11 |
connective tissue cell | 5.45e-09 | 361 |
intermediate monocyte | 2.32e-08 | 9 |
CD14-positive, CD16-positive monocyte | 2.32e-08 | 9 |
mesenchymal cell | 2.71e-08 | 354 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.74e-20 | 98 |
blood island | 2.74e-20 | 98 |
bone marrow | 1.30e-18 | 76 |
hemolymphoid system | 4.26e-18 | 108 |
immune system | 4.85e-18 | 93 |
bone element | 2.13e-17 | 82 |
skeletal element | 1.08e-15 | 90 |
skeletal system | 5.62e-13 | 100 |
connective tissue | 1.79e-09 | 371 |
lateral plate mesoderm | 1.37e-07 | 203 |