FFCP PHASE1:Hg19::chr19:45417976..45417994,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:45417976..45417994,+ to FFCP PHASE1:Hg19::chr19:45417976..45417994,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=341 | |EntrezGene=341 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=607 | |HGNC=607 | ||
|TSSclassifier=strong | |||
|UniProt=P02654,B2R526 | |UniProt=P02654,B2R526 | ||
|association_with_transcript=55bp_to_ENST00000252491,NM_001645,uc002pae.1_5end | |||
|cluster_id=chr19:45417976..45417994,+ | |||
|description=CAGE_peak_3_at_APOC1_5end | |||
|id=chr19:45417976..45417994,+ | |||
|ontology_enrichment_celltype=CL:0000039!2.53e-09!7;CL:0000586!2.53e-09!7;CL:0000181!9.54e-07!12;CL:0000417!9.54e-07!12;CL:0000668!9.54e-07!12;CL:0000414!9.54e-07!12;CL:0000412!9.54e-07!12;CL:0000182!9.54e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0000182;8.03e-24;12!CL:0000039;3.39e-23;7!CL:0000586;3.39e-23;7!CL:0000764;9.88e-11;2!CL:0000558;9.88e-11;2!CL:0000235;1.83e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,3.40e-24,12;CL:0000039,4.50e-23,7;CL:0000586,4.50e-23,7;CL:0000764,9.67e-11,2;CL:0000765,9.67e-11,2;CL:0000050,9.67e-11,2;CL:0000038,9.67e-11,2;CL:0000558,9.67e-11,2;CL:0000547,9.67e-11,2;CL:0000549,9.67e-11,2;CL:0000550,9.67e-11,2;CL:0000552,9.67e-11,2;CL:0000235,1.88e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0004161;3.37e-20;11!UBERON:0009497;5.97e-17;13!UBERON:0009117;2.11e-07;10!UBERON:0005564;2.11e-07;10!UBERON:0001041;8.11e-07;30 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:8692;7.92e-11;31!DOID:1036;1.05e-09;8!DOID:3095;5.44e-07;22!DOID:2994;5.44e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,4.41e-11,31;DOID:1036,1.22e-09,8;DOID:1240,1.75e-08,39;DOID:3095,5.90e-07,22;DOID:2994,5.90e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0002107!4.32e-07!19;UBERON:0006925!4.32e-07!19;UBERON:0008836!4.32e-07!19 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;3.45e-23;19!UBERON:0006925;3.45e-23;19!UBERON:0002423;3.65e-17;25!UBERON:0002365;3.47e-13;31!UBERON:0002330;3.47e-13;31!UBERON:0002368;1.11e-11;33!UBERON:0000949;2.59e-09;43!UBERON:0000473;3.13e-09;8!UBERON:0003135;9.77e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,1.76e-23,19;UBERON:0006925,1.76e-23,19;UBERON:0008836,1.76e-23,19;UBERON:0008835,5.14e-20,22;UBERON:0003894,5.14e-20,22;UBERON:0009854,4.62e-19,23;UBERON:0007499,2.21e-17,25;UBERON:0009497,2.21e-17,25;UBERON:0000015,2.21e-17,25;UBERON:0002423,2.21e-17,25;UBERON:0006235,2.21e-17,25;UBERON:0004161,2.21e-17,25;UBERON:0009856,1.22e-16,26;UBERON:0002365,1.21e-13,31;UBERON:0002330,1.21e-13,31;UBERON:0002368,7.23e-12,35;UBERON:0000949,1.04e-10,45;UBERON:0000473,3.74e-09,8;UBERON:0003929,1.49e-08,54;UBERON:0005172,4.85e-07,54;UBERON:0005173,4.85e-07,54 | |||
|phase1_expression=0,1.71280419112787,0,0,0,0,0,0.631719873426831,0,0,0,0,0.263766978228454,0.123766352960047,0.331397375727916,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0,0,0,0,0,0,0,0,0.895661896959697,0.647787332037959,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449446968890169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.16060901730092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0.670700859703636,0,0,0,0,0,0,0.189069634328136,0,0,0.392937226493138,0,0,0,0,0.26591592103773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.933633106199299,0,0.326923806226917,0.454072282934794,0,0.234321431833797,0,0,0,0.117434498643765,0,0,0,0.122834317311768,0.103325781175765,0,0,0.910161361938026,0.718618141816238,0,0,0,0,0,0,0.113432183160021,0,0,0.211931901159562,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365921118388786,0.397589304964456,0.116193942869518,0.414644220061482,0.504641701751257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,0,15.2106041786197,3.9313088667105,1.77236972004421,0,1.72183813960359,0,0,0,0,0.0925884451585296,0,0,0,0,0.117408694235822,0,0,0,0,0,0.984868024349589,1.40402559083543,1.63494278517601,0,0,0,0.0895585227028483,0,0,0,0.44024217006613,0.207328115540772,0.144119953416961,0.12624243342638,0,0.381988425558278,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.25572963234866,0,0,0,0,0,0,0,2.43247561282381,0.502257091432126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,1.50051156317903,0,0,0,0,0,0,0,0,0,0,0.173767228936166,0,0.343143423810856,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0.846016147141356,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0.501689773854853,0.254876273045038,0.831076008928724,0,2.85037839639715,3.39866086332371,0,0.328014645699706,0,6.59462474545423,0,0,0,0,0,0.096670718292122,0,0.614014698904518,0.275673144969061,0.429680979473094,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0.18532421910392,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0,0.0982490410131212,0,0,0,0.329294892959902,0.379473173765715,0.349934720244983,0.0962221127255121,0,0,6.02520324971387,0,0,0.443430153536676,0,0,0,0,0,0.411362273086194,0,0,0,0.854592569019785,0,0,0,0.144269212976445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223676107892416,0,0,1.39203086947621,8.61611792633986,5.67956924799565,0,8.45922030527097,0,0,0.121360521749513,0,0,0,0,0,0.994147647766298,0.281338832821026,0,0.16480387422676,0,0.19924798825107,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32656082487949,0,0.110579259931225,0,0,0,0,0,0,2.99733075704478,2.15418346583453,0.325942115766024,0,0.183195186803725,0,0,0,12.4658761425117,0.676786981851542,1.17637520590644,0,3.7950746544837,2.06617552674492,0,0,0.282706142867882,0,0,0,0,0.296521128680622,0.123563938946503,0,0.202203398942031,0,1.1713222286267,0,0.19566461893209,0.242780379534093,0,0,0,0.063186579628488,0,0.103688191397247,0,0,0,0,0,0,0,0.0979923974143777,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0.0633107959558787,0.195551382734803,0.160317640503067,0,0,0,0,1.54435498075768,0,0,0,0,0,0.101998217636322,0,0.600420288709789,0,0,0,0,0,0,0,0,0,0.223171457441873,0,0,3.49487848582361,1.96957955768059,1.56590130924216,1.81989568406299,0,0,0,0.136203406111576,0,0.412618309791701,0,0,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,2.87323822622686,0,0.453248366080503,8.06037285229453,6.62534444561107,0,0.26446520348538,0,0.704815022316672,0.320362237703084,0,0.828478110694391,0,0,0,0,0,0,0,0.327872630709804,0,0,0,0,0,0,0.248385611765534,0,0,0.606596470166591,0,0,0,0,0.149254802886874,0,0,0,0,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0,0,0,0,0.779441235357554,0.265729680626726,0.327130788511688,0.327609848846413,0.737318726261158,0,0.19998739585493,0,0,0,0,0,0,0,0.107824811396682,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0.256916900385838,0,0,0.41023272848151,0,0.207471757392654,0.161475645631851,0,0,0,0,0,0,0,0,0.225630985047772,0,0,1.83334686136996,0,0,0.0675375846183947,0.781078098613847,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,1.54339208493677,0.135939465953663,0.131545547125698,0.118193840883968,0,0,0,0,0,0,0,0.0714765441766563,0,1.04617282831313,0,0,0,0,0,0,0,0,0,0,0,0,0.111855431797792,0,0,0.647428837187895,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0.594092800654172,0,0,0.281951753939561,0.322289439867886,0,0,0,0,0,0.458729283404541,0.143339583151451,0,0.339957450954573,0,0,0,0,0,0.504665699340316,0.98339014767326,0.253397002022874,1.01988829741982,1.60330443159336,1.28652859348783,1.75495277504663,0.151557396436479,0,0,0.103432995861895,0,0.23806443146374,0,0,0,0.12729431655633,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,1.71280419112787,0,0,0,0,0,0.631719873426831,0,0,0,0,0.263766978228454,0.123766352960047,0.331397375727916,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0,0,0,0,0,0,0,0,0.895661896959697,0.647787332037959,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449446968890169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.16060901730092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0.670700859703636,0,0,0,0,0,0,0.189069634328136,0,0,0.392937226493138,0,0,0,0,0.26591592103773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.933633106199299,0,0.326923806226917,0.454072282934794,0,0.234321431833797,0,0,0,0.117434498643765,0,0,0,0.122834317311768,0.103325781175765,0,0,0.910161361938026,0.718618141816238,0,0,0,0,0,0,0.113432183160021,0,0,0.211931901159562,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365921118388786,0.397589304964456,0.116193942869518,0.414644220061482,0.504641701751257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,0,15.2106041786197,3.9313088667105,1.77236972004421,0,1.72183813960359,0,0,0,0,0.0925884451585296,0,0,0,0,0.117408694235822,0,0,0,0,0,0.984868024349589,1.40402559083543,1.63494278517601,0,0,0,0.0895585227028483,0,0,0,0.44024217006613,0.207328115540772,0.144119953416961,0.12624243342638,0,0.381988425558278,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.25572963234866,0,0,0,0,0,0,0,2.43247561282381,0.502257091432126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,1.50051156317903,0,0,0,0,0,0,0,0,0,0,0.173767228936166,0,0.343143423810856,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0.846016147141356,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0.501689773854853,0.254876273045038,0.831076008928724,0,2.85037839639715,3.39866086332371,0,0.328014645699706,0,6.59462474545423,0,0,0,0,0,0.096670718292122,0,0.614014698904518,0.275673144969061,0.429680979473094,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0.18532421910392,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0,0.0982490410131212,0,0,0,0.329294892959902,0.379473173765715,0.349934720244983,0.0962221127255121,0,0,6.02520324971387,0,0,0.443430153536676,0,0,0,0,0,0.411362273086194,0,0,0,0.854592569019785,0,0,0,0.144269212976445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223676107892416,0,0,1.39203086947621,8.61611792633986,5.67956924799565,0,8.45922030527097,0,0,0.121360521749513,0,0,0,0,0,0.994147647766298,0.281338832821026,0,0.16480387422676,0,0.19924798825107,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32656082487949,0,0.110579259931225,0,0,0,0,0,0,2.99733075704478,2.15418346583453,0.325942115766024,0,0.183195186803725,0,0,0,12.4658761425117,0.676786981851542,1.17637520590644,0,3.7950746544837,2.06617552674492,0,0,0.282706142867882,0,0,0,0,0.296521128680622,0.123563938946503,0,0.202203398942031,0,1.1713222286267,0,0.19566461893209,0.242780379534093,0,0,0,0.063186579628488,0,0.103688191397247,0,0,0,0,0,0,0,0.0979923974143777,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0.0633107959558787,0.195551382734803,0.160317640503067,0,0,0,0,1.54435498075768,0,0,0,0,0,0.101998217636322,0,0.600420288709789,0,0,0,0,0,0,0,0,0,0.223171457441873,0,0,3.49487848582361,1.96957955768059,1.56590130924216,1.81989568406299,0,0,0,0.136203406111576,0,0.412618309791701,0,0,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,2.87323822622686,0,0.453248366080503,8.06037285229453,6.62534444561107,0,0.26446520348538,0,0.704815022316672,0.320362237703084,0,0.828478110694391,0,0,0,0,0,0,0,0.327872630709804,0,0,0,0,0,0,0.248385611765534,0,0,0.606596470166591,0,0,0,0,0.149254802886874,0,0,0,0,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0,0,0,0,0.779441235357554,0.265729680626726,0.327130788511688,0.327609848846413,0.737318726261158,0,0.19998739585493,0,0,0,0,0,0,0,0.107824811396682,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0.256916900385838,0,0,0.41023272848151,0,0.207471757392654,0.161475645631851,0,0,0,0,0,0,0,0,0.225630985047772,0,0,1.83334686136996,0,0,0.0675375846183947,0.781078098613847,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,1.54339208493677,0.135939465953663,0.131545547125698,0.118193840883968,0,0,0,0,0,0,0,0.0714765441766563,0,1.04617282831313,0,0,0,0,0,0,0,0,0,0,0,0,0.111855431797792,0,0,0.647428837187895,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0.594092800654172,0,0,0.281951753939561,0.322289439867886,0,0,0,0,0,0.458729283404541,0.143339583151451,0,0.339957450954573,0,0,0,0,0,0.504665699340316,0.98339014767326,0.253397002022874,1.01988829741982,1.60330443159336,1.28652859348783,1.75495277504663,0.151557396436479,0,0,0.103432995861895,0,0.23806443146374,0,0,0,0.12729431655633,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p3@APOC1 | |||
}} | }} |
Latest revision as of 14:55, 18 September 2015
Short description: | p3@APOC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_APOC1_5end |
Coexpression cluster: | NA |
Association with transcript: | 55bp_to_ENST00000252491, NM_001645, uc002pae.1_5end |
EntrezGene: | APOC1 |
HGNC: | 607 |
UniProt: | P02654B2R526 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 3.40e-24 | 12 |
germ line cell | 4.50e-23 | 7 |
germ cell | 4.50e-23 | 7 |
erythroid lineage cell | 9.67e-11 | 2 |
erythroblast | 9.67e-11 | 2 |
megakaryocyte-erythroid progenitor cell | 9.67e-11 | 2 |
erythroid progenitor cell | 9.67e-11 | 2 |
reticulocyte | 9.67e-11 | 2 |
proerythroblast | 9.67e-11 | 2 |
basophilic erythroblast | 9.67e-11 | 2 |
polychromatophilic erythroblast | 9.67e-11 | 2 |
orthochromatic erythroblast | 9.67e-11 | 2 |
macrophage | 1.88e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
liver | 1.76e-23 | 19 |
digestive gland | 1.76e-23 | 19 |
liver bud | 1.76e-23 | 19 |
hepatic diverticulum | 5.14e-20 | 22 |
liver primordium | 5.14e-20 | 22 |
digestive tract diverticulum | 4.62e-19 | 23 |
epithelial sac | 2.21e-17 | 25 |
epithelium of foregut-midgut junction | 2.21e-17 | 25 |
anatomical boundary | 2.21e-17 | 25 |
hepatobiliary system | 2.21e-17 | 25 |
foregut-midgut junction | 2.21e-17 | 25 |
septum transversum | 2.21e-17 | 25 |
sac | 1.22e-16 | 26 |
exocrine gland | 1.21e-13 | 31 |
exocrine system | 1.21e-13 | 31 |
endocrine gland | 7.23e-12 | 35 |
endocrine system | 1.04e-10 | 45 |
testis | 3.74e-09 | 8 |
gut epithelium | 1.49e-08 | 54 |
abdomen element | 4.85e-07 | 54 |
abdominal segment element | 4.85e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 4.41e-11 | 31 |
chronic leukemia | 1.22e-09 | 8 |
leukemia | 1.75e-08 | 39 |
germ cell and embryonal cancer | 5.90e-07 | 22 |
germ cell cancer | 5.90e-07 | 22 |