FFCP PHASE1:Hg19::chr1:1164204..1164250,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:1164204..1164250,- to FFCP PHASE1:Hg19::chr1:1164204..1164250,-: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=51150 | |EntrezGene=51150 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24188 | |HGNC=24188 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-228bp_to_ENST00000403997_5end | |||
|cluster_id=chr1:1164204..1164250,- | |||
|coexpression_cluster_id=C315 | |||
|description=CAGE_peak_6_at_SDF4_5end | |||
|id=chr1:1164204..1164250,- | |||
|ontology_enrichment_celltype=CL:0000192!3.40e-07!42;CL:0000514!3.40e-07!42;CL:0000136!7.71e-07!15 | |||
|ontology_enrichment_celltype_v019=CL:0000136;4.58e-10;13!CL:0000359;4.10e-09;32!CL:0000192;1.74e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,1.63e-10,43;CL:0000514,1.63e-10,43;CL:0000359,8.62e-10,32;CL:0000136,1.69e-09,15;CL:0000187,8.62e-07,55 | |||
|ontology_enrichment_development_v019=CL:0000514;1.74e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001637!2.96e-07!42;UBERON:0003509!2.96e-07!42;UBERON:0004572!2.96e-07!42;UBERON:0004872!5.93e-07!84 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;2.99e-08;42!UBERON:0003509;2.99e-08;42!UBERON:0004572;2.99e-08;42!UBERON:0004573;2.82e-07;33!UBERON:0004571;2.82e-07;33!UBERON:0004457;3.32e-07;9!UBERON:0000042;3.32e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,3.73e-11,42;UBERON:0003509,3.73e-11,42;UBERON:0004572,3.73e-11,42;UBERON:0002100,1.92e-09,199;UBERON:0004872,3.37e-09,83;UBERON:0005256,3.61e-09,122;UBERON:0007500,5.83e-09,59;UBERON:0001981,5.83e-09,59;UBERON:0004537,5.83e-09,59;UBERON:0006965,5.83e-09,59;UBERON:0004573,3.38e-08,33;UBERON:0004571,3.38e-08,33;UBERON:0000055,3.81e-08,68;UBERON:0000926,1.09e-07,315;UBERON:0004120,1.09e-07,315;UBERON:0006603,1.09e-07,315;UBERON:0007524,3.33e-07,73;UBERON:0003914,3.87e-07,117;UBERON:0007503,7.32e-07,78;UBERON:0002329,7.45e-07,71;UBERON:0003059,7.45e-07,71;UBERON:0007282,7.45e-07,71;UBERON:0004290,7.45e-07,71;UBERON:0009618,7.45e-07,71 | |||
|phase1_expression=4.72363786103447,3.63970890614671,3.52386010239928,7.00513088471913,3.12872766099101,4.36169262050184,7.59899634504932,3.79031924056099,2.08948502559871,0,1.39560233594486,0,0.263766978228454,0.123766352960047,0.994192127183747,1.34465029290355,0.602694528023977,0,0,0.123121058076788,1.02000345622126,0.313454721478088,0,0.410623275218653,0.627713197974014,0,0.246301768349837,0.0787107813136792,0,0.383829398097213,0.154816123316076,0,1.50602959389125,1.84877005083394,0.0774672005803016,0,0.293600439334847,0,0,0.434021741431704,2.01523926815932,0.971680998056939,1.28787783817093,0.290796477559129,0.377875943688809,0,0,0,0.619412741790207,0,0.512321413058201,0,0.344745680736619,0,2.70852973188684,0.752969358170419,0.818718450173537,0.449446968890169,0,0.641858054152187,1.91801137739712,0,0,0,0.870627715885752,0,0,0.502497330513487,0.521482918420201,0.217188844705117,0,0.368277635987565,0,0.211255286311942,0.425208599930087,0.209658645508376,0,0.300353785683013,0,0,0.19891667719909,0.365328307529268,1.75996244461323,0,0,0,0,0.574752439954483,0,0,0.569212969109448,0,0.382273228125229,1.32171328579026,0,0.263384084775077,0,0,0.205601498999509,0,0.32592226663359,0,0,0.779873198196215,0,0.443067789167242,0.541607727530031,0.384273959177026,0.520237390239513,0.164437904603676,0.829050053357545,0.289803085735052,0.14828656316206,0,1.04535523804977,0,0.383220493601921,0,0.506039384039006,0,0,0,0.150575119077773,0,0,0.710331756132051,0,0.403213486449465,0,0.144824403882799,0,0,0,1.0843174571537,2.50668955317945,0.144846518960824,6.36228757640879,1.45990461090791,0.189069634328136,1.33037638477538,0.263504357079378,0.392937226493138,0,0,0.649094787309367,0.348259474598534,0.664789802594326,0.476981248610684,0.571994910780128,0,0.993812036833525,0,0.694281003215189,2.26123176769604,0.419499436209906,1.10047216776027,0.208994966536811,0.258416759169329,0.35576626268671,0.66944122552934,0.402829317109147,0,2.19655851793353,0,0,0.625098097988558,0.673588117878509,0.225222960966644,0,0,1.09921046358244,1.31780417436063,0,0,1.49091585508596,1.8994576749687,0.264818361626438,2.0078563452417,2.83734705758686,1.12135520028461,4.2699598291882,1.48000529050296,0.622422070799533,0.404132016209064,0.490385709340376,0.605429710579726,0.576175924479999,0.234321431833797,1.87296046098192,1.1409436430889,0.597794722207204,0.822041490506354,0.323745888736263,0.421352420106746,0.204154171254893,0.491337269247072,0.309977343527296,3.56400857184616,4.94533858557114,0,1.43723628363248,0.336672227908132,0.250237039743928,0,0,0.612975591598039,3.45547535485173,0.113432183160021,0.358779271377724,0.640672166455702,0.211931901159562,0,0.721367704669072,0.257640540045629,0.930584281657949,0,0.292311015483596,0.252433774244115,0.736399189138395,0.323292113637624,0.355009592516614,0.604512589365842,0.339121184620975,0.193260853163297,0,0.573609190778008,0.121973706129595,0.397589304964456,0.232387885739037,0.207322110030741,0,0.72995471815166,1.56449532329816,1.92972281457866,0,0,0.721879481669586,0.354920400119532,0.674338760312407,0.241011029883482,0.330881918197182,0,0.237270619111097,0.269662616320329,0.196221465125346,0,1.4763109092493,1.40241773803446,0,0,1.26755034821831,1.96565443335525,0.590789906681404,0,0.245976877086227,0,0.548751427043128,0,0.100528972411631,0.0925884451585296,0,2.07986957055916,0,0.115930404975077,0.117408694235822,0.144366447761074,1.38895653772983,0.761016608938393,0,0,0.984868024349589,0.702012795417713,0.743155811443641,0.93733833986777,1.17587489739202,0,0.0895585227028483,0.290633938513962,0.383382679165211,0.492663237895943,0.616339038092582,1.24396869324463,2.30591925467138,2.01987893482208,0.063497894292169,1.90994212779139,2.34434894420094,3.4214489204541,0.205654985406647,0.600686115687835,0.285826432630578,0,0,0,1.68053230485111,10.7296933755565,0.845302752556,2.39344304926383,1.04007436911366,0,0,0.532844358032199,0.285955987316295,0.542621605391443,0,0,0,0,2.41151501647669,0.871533458600294,0.99972991182057,0,0.502257091432126,2.10833939483032,0.479249710983165,1.14861935834114,0,0.579125226670317,0,0.358121926479791,0,0.591092280605782,0.646882724578552,0.898401253958239,2.03275699377971,0,0,0,0,1.49801404789436,0,0.414415513436035,0.24538298343828,1.00034104211935,0.271265023699736,0,0.178428988797162,0.157702415033935,0.585707074963566,5.11608369537122,31.8370505678379,2.0694614258501,0,1.47495334833363,0.955719759148911,0.783204629850962,1.37257369524342,0.206768026122887,0.215714200818617,0.426910231213777,1.21251028578504,1.66435439510497,0.30239029332968,2.72918588600655,0.306923946576125,1.40330047216537,3.71603532841533,2.04682899626681,0.64341568457443,0,0.308419387605311,2.48586415438378,0.492762936082855,0.519254429183621,1.27831416305955,1.69203229428271,3.00759705454927,1.38121483403844,0.34444334449382,0.546273504020151,2.75361271414791,0.902399225814824,0.15403067420883,0,0,0.73886140225013,0,0.850468526382578,0.215915916102139,0,0.541892875087706,3.01013864312912,0.509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| ||
|short_description=p6@SDF4 | |||
}} | }} |
Latest revision as of 08:17, 16 September 2015
Short description: | p6@SDF4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SDF4_5end |
Coexpression cluster: | C315_Osteoblast_Preadipocyte_mesenchymal_Smooth_Cardiac_leiomyoma_Adipocyte |
Association with transcript: | -228bp_to_ENST00000403997_5end |
EntrezGene: | SDF4 |
HGNC: | 24188 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 1.63e-10 | 43 |
smooth muscle myoblast | 1.63e-10 | 43 |
vascular associated smooth muscle cell | 8.62e-10 | 32 |
fat cell | 1.69e-09 | 15 |
muscle cell | 8.62e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
artery | 3.73e-11 | 42 |
arterial blood vessel | 3.73e-11 | 42 |
arterial system | 3.73e-11 | 42 |
trunk | 1.92e-09 | 199 |
splanchnic layer of lateral plate mesoderm | 3.37e-09 | 83 |
trunk mesenchyme | 3.61e-09 | 122 |
epithelial tube open at both ends | 5.83e-09 | 59 |
blood vessel | 5.83e-09 | 59 |
blood vasculature | 5.83e-09 | 59 |
vascular cord | 5.83e-09 | 59 |
systemic artery | 3.38e-08 | 33 |
systemic arterial system | 3.38e-08 | 33 |
vessel | 3.81e-08 | 68 |
mesoderm | 1.09e-07 | 315 |
mesoderm-derived structure | 1.09e-07 | 315 |
presumptive mesoderm | 1.09e-07 | 315 |
dense mesenchyme tissue | 3.33e-07 | 73 |
epithelial tube | 3.87e-07 | 117 |
epithelial vesicle | 7.32e-07 | 78 |
somite | 7.45e-07 | 71 |
presomitic mesoderm | 7.45e-07 | 71 |
presumptive segmental plate | 7.45e-07 | 71 |
dermomyotome | 7.45e-07 | 71 |
trunk paraxial mesoderm | 7.45e-07 | 71 |