FFCP PHASE1:Hg19::chr1:17846820..17846851,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:17846820..17846851,+ to FFCP PHASE1:Hg19::chr1:17846820..17846851,+: NSchange) |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55160 | |EntrezGene=55160 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=25540 | |HGNC=25540 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_AK129959_5end | |||
|cluster_id=chr1:17846820..17846851,+ | |||
|description=CAGE_peak_9_at_ARHGEF10L_5end | |||
|id=chr1:17846820..17846851,+ | |||
|ontology_enrichment_celltype=CL:0000066!3.64e-14!254;CL:0002076!7.85e-14!43;CL:0000223!2.34e-09!59;CL:0002251!6.56e-08!21;CL:0000622!1.39e-07!5;CL:0000244!2.87e-07!4;CL:0000731!2.87e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0000349;1.20e-12;19!CL:0002577;4.70e-10;3!CL:0002536;1.25e-07;2!CL:0002537;4.00e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,6.89e-13,19;CL:0002577,2.48e-10,3;CL:0002536,9.43e-08,2;CL:0002537,3.94e-07,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:299!2.46e-08!25;DOID:305!2.29e-07!106;DOID:5093!5.07e-07!4;DOID:1612!5.07e-07!4 | |||
|ontology_enrichment_disease_v019=DOID:5093;3.96e-08;4!DOID:1612;3.96e-08;4!DOID:299;5.72e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,6.17e-08,4;DOID:1612,6.17e-08,4;DOID:299,6.46e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.32e-15!169;UBERON:0000925!1.32e-15!169;UBERON:0006595!1.32e-15!169;UBERON:0000161!4.15e-14!35;UBERON:0005631!1.07e-11!14;UBERON:0000158!1.07e-11!14;UBERON:0001008!3.27e-11!45;UBERON:0000166!3.66e-11!21;UBERON:0001044!2.23e-10!6;UBERON:0003293!2.23e-10!6;UBERON:0003294!2.23e-10!6;UBERON:0010047!2.23e-10!6;UBERON:0000167!2.23e-10!6;UBERON:0000077!2.69e-10!130;UBERON:0006554!3.11e-10!44;UBERON:0001007!1.81e-09!155;UBERON:0001555!1.81e-09!155;UBERON:0007026!1.81e-09!155;UBERON:0004175!9.63e-09!25;UBERON:0000165!1.06e-08!28;UBERON:0000930!1.06e-08!28;UBERON:0000365!3.95e-08!5;UBERON:0004921!5.51e-08!129;UBERON:0004185!5.51e-08!129;UBERON:0001987!1.00e-07!4;UBERON:0004340!1.00e-07!4;UBERON:0003408!1.57e-07!10;UBERON:0001004!2.60e-07!72;UBERON:0003102!2.64e-07!95;UBERON:0002294!2.94e-07!7;UBERON:0001173!2.94e-07!7;UBERON:0004912!2.94e-07!7;UBERON:0000305!6.88e-07!7;UBERON:0005156!6.91e-07!59;UBERON:0000990!6.91e-07!59 | |||
|ontology_enrichment_uberon_v019=UBERON:0001987;3.29e-13;4!UBERON:0000305;1.93e-12;7!UBERON:0000478;5.01e-12;24!UBERON:0005631;6.60e-12;10!UBERON:0000158;6.60e-12;10!UBERON:0001044;6.30e-10;6!UBERON:0003293;6.30e-10;6!UBERON:0003294;6.30e-10;6!UBERON:0010047;6.30e-10;6!UBERON:0003408;6.30e-10;6!UBERON:0000167;6.30e-10;6!UBERON:0001041;1.38e-08;14!UBERON:0001829;3.08e-08;2!UBERON:0000165;8.68e-07;28 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.86e-22,14;UBERON:0000158,1.86e-22,14;UBERON:0001987,1.94e-13,4;UBERON:0004340,1.94e-13,4;UBERON:0000305,1.55e-12,7;UBERON:0000478,3.23e-12,24;UBERON:0003124,1.38e-11,7;UBERON:0004871,6.41e-11,8;UBERON:0001044,6.48e-10,6;UBERON:0003293,6.48e-10,6;UBERON:0003294,6.48e-10,6;UBERON:0010047,6.48e-10,6;UBERON:0000167,6.48e-10,6;UBERON:0000161,1.85e-09,36;UBERON:0004175,3.11e-09,25;UBERON:0000166,5.48e-09,22;UBERON:0007023,5.87e-09,114;UBERON:0001008,1.02e-08,48;UBERON:0001829,3.15e-08,2;UBERON:0004119,1.40e-07,160;UBERON:0000925,1.40e-07,160;UBERON:0006595,1.40e-07,160;UBERON:0006554,1.69e-07,47 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,1.52908960491121,3.4289707169699,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.204823675113,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.523916301990851,0.728590576585084,4.07862887062872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.966304265816484,0.818238361772504,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.658501712451753,1.1240175325762,0.100528972411631,0.370353780634118,0,0,0,0,0,0,0,0,3.1608175918371,2.57545848628462,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0.414656231081544,0.432359860250884,0.6312121671319,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.81876542867756,1.66435439510497,1.20956117331872,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0.828728900423067,0,0,0,0,0.231046011313244,0,0,0.211103257785751,0,0,0,0,0,0,1.01950509218015,0.831076008928724,0,0,0,0,0,0,1.03041011647722,0,0,0.574265537996172,0.650060246036521,0,0,0,0,0,0,0,0,0,0.330569830721956,0,0.765676274967505,0.50578890427775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,1.34060455107157,0,1.31801321087491,0.86101074534246,3.36942951335251,3.99087138183008,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8714054040822,0,0,0,0,7.63982351160608,5.64232893582013,6.75753544618311,0,0,0,0,0,1.19548792950642,0.276283915531148,0,0,0,0,0.0898683511473268,0.537063524026827,0,3.25523238601881,0,0,0,0,0,1.04171104434093,0.0874599999961957,1.44999915086959,0.682760689712998,0.254253650292766,0.945550727071745,0,0,0,0,0,0,0,0,0,0,1.81250867562184,3.23191085715948,0,0,0,0,1.5950057986596,0,0,0,0,0,0,0,0,0,0,0,1.63232808159148,0,0,1.99052386215701,0.176915129006678,0,0,0,0,0.067401132980677,0,0,0,1.17398771359254,0,1.57833761139756,0,0,0,0,0,0,0,0,0,0,0,0.867798691675654,0.783939179315021,0,0.34945333648406,0,0,0,0,11.8326600115872,0,0,0,0,0,0.391102765469606,0.320635281006135,1.70762395791482,0,0.72045208577053,0,0,0,0,0.707082103850386,0,0,0,0,0,0,0,0,0,0,0,0,0.599037001496973,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0.899895566206002,11.6070293183692,0,1.34173875039706,1.26089131678717,1.10154635083496,0,0,0,0,0,0.25426853765475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,0.839277046316667,1.24415452006595,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,1.17777262201231,0,0,0,0,0,0,0,0,0,0,0,1.03499260351932,0,0,0,0,0,4.38606213485746,3.47347824872506,0,0.383287282918786,0,0,0,0,3.193285325855,0,0,0,0,0,0.667388411352415,2.04082041411336,0,0,0,0.863710364874486,0,0,0,0,0,0,0.414432328326074,0.17071847709395,5.53007729451273,9.03477453522583,0,0,3.81048345171836,0.9164274741762,0,0,1.11855431797792,0.687051635306701,1.46301509978723,0,0,0,1.94284397223656,0,0,0,0,0,0,0,0,0,1.22574160876953,0,0,0,0,0,0,0,0,0.178553938605658,0.705789743431384,0.160482733378337,1.46067277649303,5.50475140085449,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.38229520364316,0.952257725854961,0,0.248298857183432,0,0,0,8.05551967218757,2.73786640868225,10.4395682172611,2.51027718874367,0,0.0814032686109745,0,0,0,0,0.244482888365733,1.22068853494722,3.32878387092756,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,1.52908960491121,3.4289707169699,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.204823675113,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.523916301990851,0.728590576585084,4.07862887062872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.966304265816484,0.818238361772504,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.658501712451753,1.1240175325762,0.100528972411631,0.370353780634118,0,0,0,0,0,0,0,0,3.1608175918371,2.57545848628462,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0.414656231081544,0.432359860250884,0.6312121671319,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.81876542867756,1.66435439510497,1.20956117331872,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0.828728900423067,0,0,0,0,0.231046011313244,0,0,0.211103257785751,0,0,0,0,0,0,1.01950509218015,0.831076008928724,0,0,0,0,0,0,1.03041011647722,0,0,0.574265537996172,0.650060246036521,0,0,0,0,0,0,0,0,0,0.330569830721956,0,0.765676274967505,0.50578890427775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,1.34060455107157,0,1.31801321087491,0.86101074534246,3.36942951335251,3.99087138183008,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8714054040822,0,0,0,0,7.63982351160608,5.64232893582013,6.75753544618311,0,0,0,0,0,1.19548792950642,0.276283915531148,0,0,0,0,0.0898683511473268,0.537063524026827,0,3.25523238601881,0,0,0,0,0,1.04171104434093,0.0874599999961957,1.44999915086959,0.682760689712998,0.254253650292766,0.945550727071745,0,0,0,0,0,0,0,0,0,0,1.81250867562184,3.23191085715948,0,0,0,0,1.5950057986596,0,0,0,0,0,0,0,0,0,0,0,1.63232808159148,0,0,1.99052386215701,0.176915129006678,0,0,0,0,0.067401132980677,0,0,0,1.17398771359254,0,1.57833761139756,0,0,0,0,0,0,0,0,0,0,0,0.867798691675654,0.783939179315021,0,0.34945333648406,0,0,0,0,11.8326600115872,0,0,0,0,0,0.391102765469606,0.320635281006135,1.70762395791482,0,0.72045208577053,0,0,0,0,0.707082103850386,0,0,0,0,0,0,0,0,0,0,0,0,0.599037001496973,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0.899895566206002,11.6070293183692,0,1.34173875039706,1.26089131678717,1.10154635083496,0,0,0,0,0,0.25426853765475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,0.839277046316667,1.24415452006595,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,1.17777262201231,0,0,0,0,0,0,0,0,0,0,0,1.03499260351932,0,0,0,0,0,4.38606213485746,3.47347824872506,0,0.383287282918786,0,0,0,0,3.193285325855,0,0,0,0,0,0.667388411352415,2.04082041411336,0,0,0,0.863710364874486,0,0,0,0,0,0,0.414432328326074,0.17071847709395,5.53007729451273,9.03477453522583,0,0,3.81048345171836,0.9164274741762,0,0,1.11855431797792,0.687051635306701,1.46301509978723,0,0,0,1.94284397223656,0,0,0,0,0,0,0,0,0,1.22574160876953,0,0,0,0,0,0,0,0,0.178553938605658,0.705789743431384,0.160482733378337,1.46067277649303,5.50475140085449,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.38229520364316,0.952257725854961,0,0.248298857183432,0,0,0,8.05551967218757,2.73786640868225,10.4395682172611,2.51027718874367,0,0.0814032686109745,0,0,0,0,0.244482888365733,1.22068853494722,3.32878387092756,0,0 | ||
|short_description=p9@ARHGEF10L | |||
}} | }} |
Latest revision as of 21:31, 18 September 2015
Short description: | p9@ARHGEF10L |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_ARHGEF10L_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_AK129959_5end |
EntrezGene: | ARHGEF10L |
HGNC: | 25540 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 6.89e-13 | 19 |
placental epithelial cell | 2.48e-10 | 3 |
amniotic epithelial cell | 9.43e-08 | 2 |
amnion mesenchymal stem cell | 3.94e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.86e-22 | 14 |
membranous layer | 1.86e-22 | 14 |
placenta | 1.94e-13 | 4 |
allantois | 1.94e-13 | 4 |
amnion | 1.55e-12 | 7 |
extraembryonic structure | 3.23e-12 | 24 |
chorion | 1.38e-11 | 7 |
somatic layer of lateral plate mesoderm | 6.41e-11 | 8 |
saliva-secreting gland | 6.48e-10 | 6 |
gland of oral region | 6.48e-10 | 6 |
gland of foregut | 6.48e-10 | 6 |
oral gland | 6.48e-10 | 6 |
oral cavity | 6.48e-10 | 6 |
orifice | 1.85e-09 | 36 |
internal genitalia | 3.11e-09 | 25 |
oral opening | 5.48e-09 | 22 |
adult organism | 5.87e-09 | 114 |
renal system | 1.02e-08 | 48 |
major salivary gland | 3.15e-08 | 2 |
endoderm-derived structure | 1.40e-07 | 160 |
endoderm | 1.40e-07 | 160 |
presumptive endoderm | 1.40e-07 | 160 |
urinary system structure | 1.69e-07 | 47 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 6.17e-08 | 4 |
breast cancer | 6.17e-08 | 4 |
adenocarcinoma | 6.46e-07 | 25 |