FFCP PHASE1:Hg19::chr1:35247162..35247173,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:35247162..35247173,+ to FFCP PHASE1:Hg19::chr1:35247162..35247173,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2707 | |EntrezGene=2707 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4285 | |HGNC=4285 | ||
|TSSclassifier=strong | |||
|UniProt=O75712 | |UniProt=O75712 | ||
|association_with_transcript=372bp_to_ENST00000373366,NM_024009,uc001bxx.2_5end | |||
|cluster_id=chr1:35247162..35247173,+ | |||
|coexpression_cluster_id=C511 | |||
|description=CAGE_peak_7_at_GJB3_5end | |||
|id=chr1:35247162..35247173,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.53e-35!254;CL:0002076!2.24e-30!43;CL:0000223!4.38e-22!59;CL:0002251!1.39e-16!21;CL:0002368!3.10e-16!13;CL:0002159!3.31e-11!13;CL:0002202!1.11e-10!9;CL:0002632!1.11e-10!9;CL:0000622!6.06e-08!5;CL:0000244!1.90e-07!4;CL:0000731!1.90e-07!4;CL:0000076!2.62e-07!62 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.93e-25;42!CL:0002368;2.33e-20;13!CL:0002251;1.93e-19;20!CL:0002159;3.34e-18;14!CL:0000622;5.96e-13;5!CL:0000244;4.50e-12;4!CL:0000731;4.50e-12;4!CL:0002202;3.31e-11;9!CL:0002632;3.31e-11;9!CL:0000154;9.72e-11;6!CL:0000349;4.62e-10;19!CL:0002577;1.36e-09;3!CL:0002328;1.68e-09;3!CL:0000307;1.99e-09;3!CL:0002621;6.72e-09;3!CL:0002166;7.10e-09;3!CL:0002623;2.29e-08;3!CL:0002178;3.48e-08;3!CL:0002077;3.89e-08;34!CL:0000240;8.07e-08;6!CL:0000311;8.07e-08;6!CL:0000079;8.07e-08;6!CL:0000237;8.07e-08;6!CL:0000362;1.40e-07;9!CL:0002327;2.11e-07;4!CL:0000150;4.80e-07;9!CL:0000575;6.10e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.77e-34,42;CL:0000066,3.50e-30,253;CL:0000223,3.88e-27,58;CL:0002368,1.74e-20,13;CL:0002251,2.40e-19,20;CL:0002159,3.16e-18,14;CL:0000622,5.45e-13,5;CL:0000244,4.20e-12,4;CL:0000731,4.20e-12,4;CL:0002202,3.32e-11,9;CL:0002632,3.32e-11,9;CL:0000154,9.03e-11,6;CL:0000349,4.14e-10,19;CL:0002577,1.36e-09,3;CL:0002328,1.53e-09,3;CL:0000068,2.20e-09,3;CL:0000069,2.20e-09,3;CL:0000307,2.20e-09,3;CL:0000377,2.20e-09,3;CL:0002077,2.68e-09,34;CL:0002621,7.01e-09,3;CL:0002166,7.20e-09,3;CL:0002623,2.39e-08,3;CL:0002178,4.45e-08,3;CL:0002321,7.91e-08,250;CL:0000240,8.08e-08,6;CL:0000311,8.08e-08,6;CL:0000079,8.08e-08,6;CL:0000237,8.08e-08,6;CL:0000036,8.08e-08,6;CL:0000357,8.08e-08,6;CL:0000114,8.08e-08,6;CL:0000362,1.28e-07,9;CL:0002327,2.18e-07,4;CL:0000076,2.98e-07,63;CL:0000150,4.58e-07,9;CL:0000575,6.65e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000223;3.91e-15;58!CL:0000377;1.99e-09;3!CL:0000357;8.07e-08;6!CL:0000114;8.07e-08;6 | |||
|ontology_enrichment_disease=DOID:1749!1.95e-15!14;DOID:305!5.90e-15!106;DOID:0050687!1.84e-08!143 | |||
|ontology_enrichment_disease_v019=DOID:1749;6.08e-11;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,4.70e-11,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!4.63e-24!169;UBERON:0000925!4.63e-24!169;UBERON:0006595!4.63e-24!169;UBERON:0001004!3.10e-18!72;UBERON:0000077!1.93e-15!130;UBERON:0001007!1.99e-15!155;UBERON:0001555!1.99e-15!155;UBERON:0007026!1.99e-15!155;UBERON:0000065!1.33e-14!53;UBERON:0005631!1.38e-13!14;UBERON:0000158!1.38e-13!14;UBERON:0000072!4.29e-12!46;UBERON:0004921!6.27e-12!129;UBERON:0004185!6.27e-12!129;UBERON:0001041!8.12e-11!98;UBERON:0000064!9.04e-11!219;UBERON:0003124!3.38e-10!7;UBERON:0000161!4.06e-10!35;UBERON:0008947!1.40e-09!38;UBERON:0003258!1.40e-09!38;UBERON:0000166!4.39e-09!21;UBERON:0000365!9.21e-09!5;UBERON:0000344!2.44e-08!12;UBERON:0007196!1.23e-07!14;UBERON:0001558!1.23e-07!14;UBERON:0005911!1.57e-07!82;UBERON:0003729!2.33e-07!5;UBERON:0005153!2.39e-07!37;UBERON:0000062!3.50e-07!511;UBERON:0005910!3.61e-07!6;UBERON:0001557!3.76e-07!19;UBERON:0000165!3.77e-07!28;UBERON:0000930!3.77e-07!28;UBERON:0001987!9.63e-07!4;UBERON:0004340!9.63e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0000365;2.04e-14;5!UBERON:0000486;6.85e-14;12!UBERON:0005910;6.07e-12;6!UBERON:0001041;1.61e-10;14!UBERON:0004815;1.68e-09;3!UBERON:0002031;1.68e-09;3!UBERON:0005631;5.79e-09;10!UBERON:0000158;5.79e-09;10!UBERON:0001949;6.72e-09;3!UBERON:0005911;2.38e-08;36!UBERON:0000161;1.06e-07;19!UBERON:0000166;1.06e-07;19!UBERON:0000478;1.32e-07;24!UBERON:0000165;1.58e-07;28!UBERON:0000344;2.03e-07;20!UBERON:0001911;2.11e-07;4!UBERON:0001987;2.86e-07;4!UBERON:0003729;6.00e-07;13!UBERON:0001708;9.63e-07;4!UBERON:0008895;9.63e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.26e-17,160;UBERON:0000925,1.26e-17,160;UBERON:0006595,1.26e-17,160;UBERON:0000365,1.88e-14,5;UBERON:0005631,2.30e-14,14;UBERON:0000158,2.30e-14,14;UBERON:0005910,5.68e-12,6;UBERON:0001004,7.50e-11,74;UBERON:0003124,7.50e-10,7;UBERON:0003102,1.30e-09,99;UBERON:0004815,1.53e-09,3;UBERON:0002031,1.53e-09,3;UBERON:0001949,7.01e-09,3;UBERON:0001007,1.61e-08,145;UBERON:0001555,1.61e-08,145;UBERON:0007026,1.61e-08,145;UBERON:0000161,3.66e-08,36;UBERON:0000166,3.93e-08,22;UBERON:0004923,9.79e-08,66;UBERON:0000478,1.22e-07,24;UBERON:0000344,1.95e-07,20;UBERON:0001911,2.18e-07,4;UBERON:0005333,2.18e-07,4;UBERON:0008425,2.18e-07,4;UBERON:0005311,2.18e-07,4;UBERON:0004921,2.19e-07,118;UBERON:0001987,2.86e-07,4;UBERON:0004340,2.86e-07,4;UBERON:0000033,2.91e-07,56;UBERON:0000165,3.52e-07,29;UBERON:0000930,3.52e-07,29;UBERON:0001041,4.75e-07,87;UBERON:0003729,6.04e-07,13;UBERON:0000065,8.94e-07,54;UBERON:0001708,9.73e-07,4;UBERON:0008895,9.73e-07,4 | |||
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| ||
|short_description=p7@GJB3 | |||
}} | }} |
Latest revision as of 17:52, 17 September 2015
Short description: | p7@GJB3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_GJB3_5end |
Coexpression cluster: | C511_Placental_Alveolar_Bronchial_amniotic_Gingival_Corneal_Mammary |
Association with transcript: | 372bp_to_ENST00000373366, NM_024009, uc001bxx.2_5end |
EntrezGene: | GJB3 |
HGNC: | 4285 |
UniProt: | O75712 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.26e-17 | 160 |
endoderm | 1.26e-17 | 160 |
presumptive endoderm | 1.26e-17 | 160 |
urothelium | 1.88e-14 | 5 |
extraembryonic membrane | 2.30e-14 | 14 |
membranous layer | 2.30e-14 | 14 |
transitional epithelium | 5.68e-12 | 6 |
respiratory system | 7.50e-11 | 74 |
chorion | 7.50e-10 | 7 |
surface structure | 1.30e-09 | 99 |
lower respiratory tract epithelium | 1.53e-09 | 3 |
epithelium of bronchus | 1.53e-09 | 3 |
gingival epithelium | 7.01e-09 | 3 |
digestive system | 1.61e-08 | 145 |
digestive tract | 1.61e-08 | 145 |
primitive gut | 1.61e-08 | 145 |
orifice | 3.66e-08 | 36 |
oral opening | 3.93e-08 | 22 |
organ component layer | 9.79e-08 | 66 |
extraembryonic structure | 1.22e-07 | 24 |
mucosa | 1.95e-07 | 20 |
mammary gland | 2.18e-07 | 4 |
mammary bud | 2.18e-07 | 4 |
mammary ridge | 2.18e-07 | 4 |
mammary placode | 2.18e-07 | 4 |
subdivision of digestive tract | 2.19e-07 | 118 |
placenta | 2.86e-07 | 4 |
allantois | 2.86e-07 | 4 |
head | 2.91e-07 | 56 |
mouth | 3.52e-07 | 29 |
stomodeum | 3.52e-07 | 29 |
foregut | 4.75e-07 | 87 |
mouth mucosa | 6.04e-07 | 13 |
respiratory tract | 8.94e-07 | 54 |
jaw skeleton | 9.73e-07 | 4 |
splanchnocranium | 9.73e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 4.70e-11 | 14 |