FFCP PHASE1:Hg19::chr1:94057594..94057608,+: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=100129046 | |EntrezGene=100129046 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=69bp_to_NR_034091,uc009wdn.2_5end | |||
|cluster_id=chr1:94057594..94057608,+ | |||
|coexpression_cluster_id=C783 | |||
|description=CAGE_peak_3_at_LOC100129046_5end | |||
|id=chr1:94057594..94057608,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000182;3.06e-23;12!CL:0002535;4.56e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,2.93e-23,12;CL:0002535,4.56e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0009497;4.45e-41;13!UBERON:0004161;9.58e-36;11!UBERON:0001041;8.83e-23;30!UBERON:0006242;3.26e-12;1!UBERON:0003104;8.42e-12;31 | |||
|ontology_enrichment_disease=DOID:3119!4.26e-09!14;DOID:305!8.83e-09!106;DOID:0050687!1.21e-08!143;DOID:299!1.24e-07!25;DOID:3493!8.96e-07!2 | |||
|ontology_enrichment_disease_v019=DOID:3493;4.82e-07;2!DOID:7;9.85e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.76e-13,106;DOID:0050687,1.51e-09,143;DOID:7,4.08e-07,39;DOID:3493,4.83e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0004921!2.75e-12!129;UBERON:0004185!2.75e-12!129;UBERON:0005409!4.33e-12!35;UBERON:0000160!6.06e-10!27;UBERON:0001007!6.83e-10!155;UBERON:0001555!6.83e-10!155;UBERON:0007026!6.83e-10!155;UBERON:0006947!1.20e-09!3;UBERON:0004054!1.20e-09!3;UBERON:0000466!6.43e-09!126;UBERON:0005172!1.10e-08!55;UBERON:0005173!1.10e-08!55;UBERON:0005177!1.21e-08!107;UBERON:0009497!1.26e-08!25;UBERON:0000015!1.26e-08!25;UBERON:0002423!1.26e-08!25;UBERON:0006235!1.26e-08!25;UBERON:0004161!1.26e-08!25;UBERON:0004119!1.82e-08!169;UBERON:0000925!1.82e-08!169;UBERON:0006595!1.82e-08!169;UBERON:0008835!5.89e-08!22;UBERON:0003894!5.89e-08!22;UBERON:0009854!1.52e-07!23;UBERON:0002417!1.73e-07!61;UBERON:0000916!1.73e-07!61;UBERON:0005904!2.55e-07!4;UBERON:0002107!3.12e-07!19;UBERON:0006925!3.12e-07!19;UBERON:0008836!3.12e-07!19;UBERON:0001041!5.12e-07!98;UBERON:0007499!8.05e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0002423;1.54e-27;25!UBERON:0002107;1.00e-20;19!UBERON:0006925;1.00e-20;19!UBERON:0002365;7.16e-12;31!UBERON:0002330;7.16e-12;31!UBERON:0002368;1.46e-11;33!UBERON:0005172;1.59e-08;52!UBERON:0005173;1.59e-08;52!UBERON:0002294;2.77e-07;7!UBERON:0001173;2.77e-07;7!UBERON:0006955;4.56e-07;2!UBERON:0004801;4.56e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0009497,1.63e-27,25;UBERON:0000015,1.63e-27,25;UBERON:0002423,1.63e-27,25;UBERON:0006235,1.63e-27,25;UBERON:0004161,1.63e-27,25;UBERON:0008835,3.21e-24,22;UBERON:0003894,3.21e-24,22;UBERON:0009854,3.83e-23,23;UBERON:0007499,3.01e-21,25;UBERON:0002107,9.85e-21,19;UBERON:0006925,9.85e-21,19;UBERON:0008836,9.85e-21,19;UBERON:0009856,2.07e-20,26;UBERON:0002365,1.39e-12,31;UBERON:0002330,1.39e-12,31;UBERON:0003929,2.72e-12,54;UBERON:0005172,3.24e-12,54;UBERON:0005173,3.24e-12,54;UBERON:0005911,3.28e-12,82;UBERON:0002368,4.21e-11,35;UBERON:0002417,6.61e-11,60;UBERON:0000916,6.61e-11,60;UBERON:0005177,1.30e-09,101;UBERON:0001041,2.96e-09,87;UBERON:0000949,1.51e-08,45;UBERON:0009569,1.56e-08,112;UBERON:0004921,5.47e-08,118;UBERON:0001007,1.23e-07,145;UBERON:0001555,1.23e-07,145;UBERON:0007026,1.23e-07,145;UBERON:0006955,4.56e-07,2;UBERON:0004801,4.56e-07,2;UBERON:0004119,8.88e-07,160;UBERON:0000925,8.88e-07,160;UBERON:0006595,8.88e-07,160 | |||
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| ||
|short_description=p3@LOC100129046 | |||
}} | }} |
Latest revision as of 21:49, 19 September 2015
Short description: | p3@LOC100129046 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LOC100129046_5end |
Coexpression cluster: | C783_argyrophil_Hepatocyte_liver_gastrointestinal_hepatocellular_adenocarcinoma_Intestinal |
Association with transcript: | 69bp_to_NR_034091, uc009wdn.2_5end |
EntrezGene: | LOC100129046 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 2.93e-23 | 12 |
epithelial cell of cervix | 4.56e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
epithelium of foregut-midgut junction | 1.63e-27 | 25 |
anatomical boundary | 1.63e-27 | 25 |
hepatobiliary system | 1.63e-27 | 25 |
foregut-midgut junction | 1.63e-27 | 25 |
septum transversum | 1.63e-27 | 25 |
hepatic diverticulum | 3.21e-24 | 22 |
liver primordium | 3.21e-24 | 22 |
digestive tract diverticulum | 3.83e-23 | 23 |
epithelial sac | 3.01e-21 | 25 |
liver | 9.85e-21 | 19 |
digestive gland | 9.85e-21 | 19 |
liver bud | 9.85e-21 | 19 |
sac | 2.07e-20 | 26 |
exocrine gland | 1.39e-12 | 31 |
exocrine system | 1.39e-12 | 31 |
gut epithelium | 2.72e-12 | 54 |
abdomen element | 3.24e-12 | 54 |
abdominal segment element | 3.24e-12 | 54 |
endo-epithelium | 3.28e-12 | 82 |
endocrine gland | 4.21e-11 | 35 |
abdominal segment of trunk | 6.61e-11 | 60 |
abdomen | 6.61e-11 | 60 |
trunk region element | 1.30e-09 | 101 |
foregut | 2.96e-09 | 87 |
endocrine system | 1.51e-08 | 45 |
subdivision of trunk | 1.56e-08 | 112 |
subdivision of digestive tract | 5.47e-08 | 118 |
digestive system | 1.23e-07 | 145 |
digestive tract | 1.23e-07 | 145 |
primitive gut | 1.23e-07 | 145 |
uterine epithelium | 4.56e-07 | 2 |
cervix epithelium | 4.56e-07 | 2 |
endoderm-derived structure | 8.88e-07 | 160 |
endoderm | 8.88e-07 | 160 |
presumptive endoderm | 8.88e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.76e-13 | 106 |
cell type cancer | 1.51e-09 | 143 |
disease of anatomical entity | 4.08e-07 | 39 |
signet ring cell adenocarcinoma | 4.83e-07 | 2 |