FFCP PHASE1:Hg19::chr22:35806380..35806393,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr22:35806380..35806393,+ to FFCP PHASE1:Hg19::chr22:35806380..35806393,+: NSchange) |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4174 | |EntrezGene=4174 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6948 | |HGNC=6948 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-8bp_to_ENST00000493076,uc003anw.1_5end | |||
|cluster_id=chr22:35806380..35806393,+ | |||
|description=CAGE_peak_9_at_MCM5_5end | |||
|id=chr22:35806380..35806393,+ | |||
|ontology_enrichment_celltype=CL:0002087!3.85e-45!119;CL:0000738!3.18e-44!140;CL:0002057!5.41e-43!42;CL:0000860!1.82e-39!45;CL:0002031!1.03e-37!124;CL:0000037!1.45e-35!172;CL:0000566!1.45e-35!172;CL:0002194!8.84e-35!63;CL:0000576!8.84e-35!63;CL:0000040!8.84e-35!63;CL:0000559!8.84e-35!63;CL:0002009!2.18e-33!65;CL:0000988!1.21e-32!182;CL:0002032!3.48e-32!165;CL:0000837!3.48e-32!165;CL:0000766!8.57e-31!76;CL:0000839!2.93e-30!70;CL:0000557!1.10e-29!71;CL:0000945!2.05e-23!24;CL:0000826!2.05e-23!24;CL:0000763!3.07e-22!112;CL:0000049!3.07e-22!112;CL:0000236!8.75e-15!14;CL:0000134!1.47e-09!358;CL:0000838!1.83e-09!52;CL:0000542!3.38e-09!53;CL:0000051!3.38e-09!53;CL:0002320!4.51e-09!365;CL:0002393!1.71e-08!9;CL:0002397!1.71e-08!9;CL:0000451!3.35e-08!10;CL:0000990!1.76e-07!8;CL:0000219!2.18e-07!390;CL:0000875!3.85e-07!3;CL:0002396!3.85e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.80e-25;33!CL:0002057;2.80e-25;33!CL:0000945;1.20e-23;24!CL:0000236;9.68e-18;13!CL:0000576;4.28e-17;48!CL:0000473;8.54e-17;39!CL:0000234;8.54e-17;39!CL:0002087;6.47e-12;104!CL:0000738;5.64e-09;136!CL:0000542;2.91e-08;53!CL:0000766;2.20e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,7.22e-29,42;CL:0002057,7.22e-29,42;CL:0002087,2.48e-28,115;CL:0002031,4.85e-27,120;CL:0000473,4.98e-25,48;CL:0000234,4.98e-25,48;CL:0000945,1.34e-23,24;CL:0000826,1.34e-23,24;CL:0000738,1.54e-23,136;CL:0002194,1.20e-19,59;CL:0000576,1.20e-19,59;CL:0000040,1.20e-19,59;CL:0000559,1.20e-19,59;CL:0002032,1.92e-19,161;CL:0000837,1.92e-19,161;CL:0002009,5.93e-19,61;CL:0000037,1.64e-18,168;CL:0000988,2.01e-17,177;CL:0000839,2.13e-17,66;CL:0000557,4.10e-17,67;CL:0000236,1.71e-16,14;CL:0000766,8.24e-16,72;CL:0000838,2.32e-10,52;CL:0000542,3.81e-10,53;CL:0000051,3.81e-10,53;CL:0000763,5.96e-10,108;CL:0000049,5.96e-10,108;CL:0000134,3.83e-07,354;CL:0002320,6.11e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;2.29e-19;42!UBERON:0001045;2.38e-10;1!CL:0000051;2.91e-08;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.63e-32!102;UBERON:0003061!3.63e-32!102;UBERON:0002193!1.11e-29!112;UBERON:0002371!3.53e-25!80;UBERON:0001474!1.06e-22!86;UBERON:0004765!4.47e-19!101;UBERON:0001434!4.47e-19!101;UBERON:0002405!4.90e-19!115;UBERON:0003081!5.01e-10!216;UBERON:0002384!6.49e-09!375;UBERON:0002204!9.61e-08!167;UBERON:0002106!4.66e-07!3;UBERON:0004854!4.66e-07!3;UBERON:0009034!4.66e-07!3;UBERON:0002095!4.66e-07!3;UBERON:0004782!4.66e-07!3;UBERON:0003281!4.66e-07!3;UBERON:0009664!4.66e-07!3;UBERON:0002296!4.66e-07!3;UBERON:0005602!4.66e-07!3;UBERON:0001179!4.66e-07!3;UBERON:0006293!4.66e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0001154;2.38e-10;1!UBERON:0001153;2.38e-10;1!UBERON:0009854;2.38e-10;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,6.86e-15,76;UBERON:0001474,1.13e-13,82;UBERON:0002390,3.26e-13,98;UBERON:0003061,3.26e-13,98;UBERON:0004765,2.65e-12,90;UBERON:0002405,7.55e-12,93;UBERON:0002193,8.34e-12,108;UBERON:0001434,6.81e-11,100;UBERON:0001154,1.73e-10,1;UBERON:0001153,1.73e-10,1;UBERON:0001045,1.73e-10,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.29240217243854,1.14940825229924,2.04648031415566,0,0.383829398097213,0,0,0,0,0.232401601740905,0.568676929949686,0,0,0,0,0,0,0,1.30858414901608,1.13362783106643,2.91100873425379,0.697287110717054,0.822335776043652,1.85823822537062,0.28769239232215,0.256160706529101,1.18241114944293,0.344745680736619,1.93645405075148,0,0.941211697713023,1.09162460023138,1.34834090667051,1.53041946185451,0.641858054152187,1.91801137739712,0.329851300186716,0,0,0.290209238628584,0,0,0.502497330513487,0,0.868755378820466,0,0.368277635987565,0.316462387440884,1.47878700418359,0.850417199860174,0.628975936525128,0.112328631146495,0,0.32145117339416,0.570025487482497,0.19891667719909,1.0959849225878,5.27988733383968,3.27683166757279,1.77901850772711,0.853460445133014,1.20118796110804,0.574752439954483,0,0,0,0.587237189370939,3.05818582500183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324547393654683,0.348259474598534,0.531831842075461,0.238490624305342,0,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234004265139238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.215714200818617,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0,0,0,0.0941438007767792,0,0,0,0,0.507447609232169,0,0,0.476463550915578,1.23408681925858,0,0.540031437238115,0,0,0,0,0,0,0,0,0,0,0,0,0,0.456469358066384,0,0,0,0,0.201799707191048,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,1.65770349318689,0,0,0.369254416383208,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182454789215666,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.788662062837943,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.544813624446302,0,0,0,0,0,0.121499113316049,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26446520348538,0,0,0,0.157204305099666,0,0,0.197611631897944,0.365377795142688,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0.132864840313363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0.460935950223117,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.297046400327086,0,0,0.845855261818682,0.257831551894309,0.399764623699716,0,0,0,0,0,0.716697915757256,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0.471464371102113,0.143444410785353,0,0,0,0,0,0,0,0,0,0.805095174364105,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.29240217243854,1.14940825229924,2.04648031415566,0,0.383829398097213,0,0,0,0,0.232401601740905,0.568676929949686,0,0,0,0,0,0,0,1.30858414901608,1.13362783106643,2.91100873425379,0.697287110717054,0.822335776043652,1.85823822537062,0.28769239232215,0.256160706529101,1.18241114944293,0.344745680736619,1.93645405075148,0,0.941211697713023,1.09162460023138,1.34834090667051,1.53041946185451,0.641858054152187,1.91801137739712,0.329851300186716,0,0,0.290209238628584,0,0,0.502497330513487,0,0.868755378820466,0,0.368277635987565,0.316462387440884,1.47878700418359,0.850417199860174,0.628975936525128,0.112328631146495,0,0.32145117339416,0.570025487482497,0.19891667719909,1.0959849225878,5.27988733383968,3.27683166757279,1.77901850772711,0.853460445133014,1.20118796110804,0.574752439954483,0,0,0,0.587237189370939,3.05818582500183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324547393654683,0.348259474598534,0.531831842075461,0.238490624305342,0,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234004265139238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.215714200818617,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0,0,0,0.0941438007767792,0,0,0,0,0.507447609232169,0,0,0.476463550915578,1.23408681925858,0,0.540031437238115,0,0,0,0,0,0,0,0,0,0,0,0,0,0.456469358066384,0,0,0,0,0.201799707191048,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,1.65770349318689,0,0,0.369254416383208,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182454789215666,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.788662062837943,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.544813624446302,0,0,0,0,0,0.121499113316049,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26446520348538,0,0,0,0.157204305099666,0,0,0.197611631897944,0.365377795142688,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0.132864840313363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0.460935950223117,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.297046400327086,0,0,0.845855261818682,0.257831551894309,0.399764623699716,0,0,0,0,0,0.716697915757256,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0.471464371102113,0.143444410785353,0,0,0,0,0,0,0,0,0,0.805095174364105,0 | ||
|short_description=p9@MCM5 | |||
}} | }} |
Latest revision as of 00:04, 20 September 2015
Short description: | p9@MCM5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_MCM5_5end |
Coexpression cluster: | NA |
Association with transcript: | -8bp_to_ENST00000493076, uc003anw.1_5end |
EntrezGene: | MCM5 |
HGNC: | 6948 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 7.22e-29 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.22e-29 | 42 |
nongranular leukocyte | 2.48e-28 | 115 |
hematopoietic lineage restricted progenitor cell | 4.85e-27 | 120 |
defensive cell | 4.98e-25 | 48 |
phagocyte | 4.98e-25 | 48 |
lymphocyte of B lineage | 1.34e-23 | 24 |
pro-B cell | 1.34e-23 | 24 |
leukocyte | 1.54e-23 | 136 |
monopoietic cell | 1.20e-19 | 59 |
monocyte | 1.20e-19 | 59 |
monoblast | 1.20e-19 | 59 |
promonocyte | 1.20e-19 | 59 |
hematopoietic oligopotent progenitor cell | 1.92e-19 | 161 |
hematopoietic multipotent progenitor cell | 1.92e-19 | 161 |
macrophage dendritic cell progenitor | 5.93e-19 | 61 |
hematopoietic stem cell | 1.64e-18 | 168 |
hematopoietic cell | 2.01e-17 | 177 |
myeloid lineage restricted progenitor cell | 2.13e-17 | 66 |
granulocyte monocyte progenitor cell | 4.10e-17 | 67 |
B cell | 1.71e-16 | 14 |
myeloid leukocyte | 8.24e-16 | 72 |
lymphoid lineage restricted progenitor cell | 2.32e-10 | 52 |
lymphocyte | 3.81e-10 | 53 |
common lymphoid progenitor | 3.81e-10 | 53 |
myeloid cell | 5.96e-10 | 108 |
common myeloid progenitor | 5.96e-10 | 108 |
mesenchymal cell | 3.83e-07 | 354 |
connective tissue cell | 6.11e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 6.86e-15 | 76 |
bone element | 1.13e-13 | 82 |
hematopoietic system | 3.26e-13 | 98 |
blood island | 3.26e-13 | 98 |
skeletal element | 2.65e-12 | 90 |
immune system | 7.55e-12 | 93 |
hemolymphoid system | 8.34e-12 | 108 |
skeletal system | 6.81e-11 | 100 |
vermiform appendix | 1.73e-10 | 1 |
caecum | 1.73e-10 | 1 |
midgut | 1.73e-10 | 1 |