FFCP PHASE1:Hg19::chr3:124606458..124606482,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:124606458..124606482,- to FFCP PHASE1:Hg19::chr3:124606458..124606482,-: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3693 | |EntrezGene=3693 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6160 | |HGNC=6160 | ||
|TSSclassifier=strong | |||
|UniProt=P18084 | |UniProt=P18084 | ||
|association_with_transcript=-314bp_to_ENST00000296181,NM_002213,uc003eho.2_5end | |||
|cluster_id=chr3:124606458..124606482,- | |||
|description=CAGE_peak_5_at_ITGB5_5end | |||
|id=chr3:124606458..124606482,- | |||
|ontology_enrichment_celltype=CL:0000055!2.09e-13!180;CL:0002321!1.32e-12!248;CL:0000222!1.96e-12!119;CL:0000220!5.11e-12!246;CL:0002078!4.15e-07!44 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,1.71e-10,121;CL:0002321,1.57e-09,250;CL:0002078,3.99e-07,45 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!3.53e-19!659;UBERON:0003914!1.79e-16!118;UBERON:0000119!1.94e-15!312;UBERON:0000483!4.41e-15!309;UBERON:0000922!1.30e-13!612;UBERON:0000467!2.97e-13!625;UBERON:0002100!3.09e-13!216;UBERON:0000480!4.37e-13!626;UBERON:0000025!6.88e-13!194;UBERON:0002049!9.22e-13!79;UBERON:0007798!9.22e-13!79;UBERON:0004872!3.84e-12!84;UBERON:0000481!7.86e-12!347;UBERON:0000475!9.14e-12!365;UBERON:0002050!1.47e-11!605;UBERON:0005423!1.47e-11!605;UBERON:0000477!2.60e-11!286;UBERON:0000055!2.76e-11!69;UBERON:0000923!2.97e-11!604;UBERON:0005291!2.97e-11!604;UBERON:0006598!2.97e-11!604;UBERON:0002532!2.97e-11!604;UBERON:0001009!3.52e-11!113;UBERON:0004111!4.77e-11!241;UBERON:0001981!8.57e-11!60;UBERON:0007500!8.57e-11!60;UBERON:0004537!8.57e-11!60;UBERON:0006965!8.57e-11!60;UBERON:0004535!1.57e-10!110;UBERON:0003886!2.46e-10!63;UBERON:0005256!2.72e-10!143;UBERON:0000490!1.15e-09!138;UBERON:0003104!1.06e-08!238;UBERON:0009142!1.06e-08!238;UBERON:0001637!1.70e-08!42;UBERON:0003509!1.70e-08!42;UBERON:0004572!1.70e-08!42;UBERON:0009569!6.21e-08!113;UBERON:0000466!1.12e-07!126;UBERON:0004458!1.54e-07!49;UBERON:0002553!1.61e-07!70;UBERON:0004573!1.88e-07!33;UBERON:0004571!1.88e-07!33;UBERON:0001048!5.59e-07!168;UBERON:0002323!5.70e-07!46 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.14e-07;33!UBERON:0004571;1.14e-07;33!UBERON:0001637;2.37e-07;42!UBERON:0003509;2.37e-07;42!UBERON:0004572;2.37e-07;42!UBERON:0000353;8.19e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003914,4.89e-17,117;UBERON:0002049,1.18e-12,78;UBERON:0007798,1.18e-12,78;UBERON:0004872,9.46e-12,83;UBERON:0000055,2.76e-11,68;UBERON:0007500,5.45e-11,59;UBERON:0001981,5.45e-11,59;UBERON:0004537,5.45e-11,59;UBERON:0006965,5.45e-11,59;UBERON:0002100,6.18e-11,199;UBERON:0000119,6.85e-11,309;UBERON:0000025,9.22e-11,192;UBERON:0000483,1.42e-10,306;UBERON:0001009,1.42e-10,112;UBERON:0003886,3.08e-10,54;UBERON:0004535,6.74e-10,109;UBERON:0001637,7.18e-09,42;UBERON:0003509,7.18e-09,42;UBERON:0004572,7.18e-09,42;UBERON:0003104,7.52e-09,160;UBERON:0009142,7.52e-09,160;UBERON:0005256,6.71e-08,122;UBERON:0004573,1.01e-07,33;UBERON:0004571,1.01e-07,33;UBERON:0004111,1.24e-07,240;UBERON:0000490,1.92e-07,148;UBERON:0004458,2.04e-07,49;UBERON:0002553,4.05e-07,61;UBERON:0009569,5.12e-07,112;UBERON:0000922,5.35e-07,592;UBERON:0007503,5.77e-07,78;UBERON:0000353,7.79e-07,15;UBERON:0002323,8.25e-07,46 | |||
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| ||
|short_description=p5@ITGB5 | |||
}} | }} |
Latest revision as of 02:46, 20 September 2015
Short description: | p5@ITGB5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_ITGB5_5end |
Coexpression cluster: | NA |
Association with transcript: | -314bp_to_ENST00000296181, NM_002213, uc003eho.2_5end |
EntrezGene: | ITGB5 |
HGNC: | 6160 |
UniProt: | P18084 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 1.71e-10 | 121 |
embryonic cell | 1.57e-09 | 250 |
meso-epithelial cell | 3.99e-07 | 45 |
Ontology term | p-value | n |
---|---|---|
epithelial tube | 4.89e-17 | 117 |
vasculature | 1.18e-12 | 78 |
vascular system | 1.18e-12 | 78 |
splanchnic layer of lateral plate mesoderm | 9.46e-12 | 83 |
vessel | 2.76e-11 | 68 |
epithelial tube open at both ends | 5.45e-11 | 59 |
blood vessel | 5.45e-11 | 59 |
blood vasculature | 5.45e-11 | 59 |
vascular cord | 5.45e-11 | 59 |
trunk | 6.18e-11 | 199 |
cell layer | 6.85e-11 | 309 |
tube | 9.22e-11 | 192 |
epithelium | 1.42e-10 | 306 |
circulatory system | 1.42e-10 | 112 |
body cavity precursor | 3.08e-10 | 54 |
cardiovascular system | 6.74e-10 | 109 |
artery | 7.18e-09 | 42 |
arterial blood vessel | 7.18e-09 | 42 |
arterial system | 7.18e-09 | 42 |
mesenchyme | 7.52e-09 | 160 |
entire embryonic mesenchyme | 7.52e-09 | 160 |
trunk mesenchyme | 6.71e-08 | 122 |
systemic artery | 1.01e-07 | 33 |
systemic arterial system | 1.01e-07 | 33 |
anatomical conduit | 1.24e-07 | 240 |
unilaminar epithelium | 1.92e-07 | 148 |
body cavity or lining | 2.04e-07 | 49 |
anatomical cavity | 4.05e-07 | 61 |
subdivision of trunk | 5.12e-07 | 112 |
embryo | 5.35e-07 | 592 |
epithelial vesicle | 5.77e-07 | 78 |
parenchyma | 7.79e-07 | 15 |
body cavity | 8.25e-07 | 46 |