FFCP PHASE1:Hg19::chr3:49377619..49377665,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:49377619..49377665,- to FFCP PHASE1:Hg19::chr3:49377619..49377665,-: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7375 | |EntrezGene=7375 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12627 | |HGNC=12627 | ||
|TSSclassifier=strong | |||
|UniProt=C9IY91,Q08AK7,Q13107 | |UniProt=C9IY91,Q08AK7,Q13107 | ||
|association_with_transcript=-83bp_to_NM_001251877,NM_003363,NM_199443,uc003cwq.2,uc003cwr.2_5end | |||
|cluster_id=chr3:49377619..49377665,- | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_3_at_USP4_5end | |||
|id=chr3:49377619..49377665,- | |||
|ontology_enrichment_celltype=CL:0000766!5.87e-29!76;CL:0000763!1.03e-26!112;CL:0000049!1.03e-26!112;CL:0002194!8.05e-24!63;CL:0000576!8.05e-24!63;CL:0000040!8.05e-24!63;CL:0000559!8.05e-24!63;CL:0000557!1.10e-23!71;CL:0000839!6.07e-23!70;CL:0002009!7.73e-23!65;CL:0002057!1.66e-22!42;CL:0000860!6.98e-22!45;CL:0000037!8.93e-14!172;CL:0000566!8.93e-14!172;CL:0000988!2.60e-13!182;CL:0002032!1.24e-12!165;CL:0000837!1.24e-12!165;CL:0000738!3.67e-11!140;CL:0002087!1.67e-08!119;CL:0002031!8.07e-08!124;CL:0000115!1.37e-07!35 | |||
|ontology_enrichment_celltype_v019=CL:0000860;8.07e-26;33!CL:0002057;8.07e-26;33!CL:0000576;1.02e-24;48!CL:0000473;4.63e-24;39!CL:0000234;4.63e-24;39!CL:0000766;1.13e-20;69!CL:0000763;3.70e-12;100!CL:0000115;3.56e-11;36!CL:0000094;5.59e-10;8!CL:0002139;1.91e-07;24!CL:0002393;5.83e-07;6!CL:0002397;5.83e-07;6!CL:0002078;9.05e-07;45 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,9.96e-45,72;CL:0002194,4.18e-38,59;CL:0000576,4.18e-38,59;CL:0000040,4.18e-38,59;CL:0000559,4.18e-38,59;CL:0000473,1.09e-37,48;CL:0000234,1.09e-37,48;CL:0002009,3.31e-36,61;CL:0000763,6.09e-36,108;CL:0000049,6.09e-36,108;CL:0000557,1.01e-35,67;CL:0000860,8.28e-35,42;CL:0002057,8.28e-35,42;CL:0000839,1.26e-34,66;CL:0000037,1.13e-19,168;CL:0000738,3.26e-19,136;CL:0002032,1.72e-18,161;CL:0000837,1.72e-18,161;CL:0000988,2.27e-17,177;CL:0002087,6.29e-15,115;CL:0002031,2.58e-13,120;CL:0000115,5.79e-13,36;CL:0000094,5.45e-10,8;CL:0002078,9.03e-10,45;CL:0002393,2.26e-08,9;CL:0002397,2.26e-08,9;CL:0002139,2.13e-07,24;CL:0000071,7.12e-07,18;CL:0002546,7.12e-07,18 | |||
|ontology_enrichment_development_v019=CL:0002057;8.98e-26;42!CL:0000049;1.26e-10;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!6.26e-24!102;UBERON:0003061!6.26e-24!102;UBERON:0002193!3.40e-23!112;UBERON:0002371!4.04e-20!80;UBERON:0001474!5.50e-20!86;UBERON:0004765!5.64e-17!101;UBERON:0001434!5.64e-17!101;UBERON:0002405!6.76e-15!115;UBERON:0003081!1.84e-09!216;UBERON:0000073!6.21e-07!94;UBERON:0001016!6.21e-07!94 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.78e-32,98;UBERON:0003061,1.78e-32,98;UBERON:0002193,5.11e-31,108;UBERON:0002371,4.19e-30,76;UBERON:0001474,1.60e-27,82;UBERON:0002405,1.51e-26,93;UBERON:0004765,2.76e-23,90;UBERON:0001434,1.66e-20,100;UBERON:0003081,1.96e-16,203;UBERON:0002204,1.99e-07,167;UBERON:0004638,7.12e-07,18;UBERON:0001986,7.12e-07,18;UBERON:0004852,7.12e-07,18;UBERON:0000926,7.40e-07,315;UBERON:0004120,7.40e-07,315;UBERON:0006603,7.40e-07,315 | |||
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| ||
|short_description=p3@USP4 | |||
}} | }} |
Latest revision as of 16:32, 18 September 2015
Short description: | p3@USP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_USP4_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | -83bp_to_NM_001251877, NM_003363, NM_199443, uc003cwq.2, uc003cwr.2_5end |
EntrezGene: | USP4 |
HGNC: | 12627 |
UniProt: | C9IY91Q08AK7Q13107 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.78e-32 | 98 |
blood island | 1.78e-32 | 98 |
hemolymphoid system | 5.11e-31 | 108 |
bone marrow | 4.19e-30 | 76 |
bone element | 1.60e-27 | 82 |
immune system | 1.51e-26 | 93 |
skeletal element | 2.76e-23 | 90 |
skeletal system | 1.66e-20 | 100 |
lateral plate mesoderm | 1.96e-16 | 203 |
musculoskeletal system | 1.99e-07 | 167 |
blood vessel endothelium | 7.12e-07 | 18 |
endothelium | 7.12e-07 | 18 |
cardiovascular system endothelium | 7.12e-07 | 18 |
mesoderm | 7.40e-07 | 315 |
mesoderm-derived structure | 7.40e-07 | 315 |
presumptive mesoderm | 7.40e-07 | 315 |