FFCP PHASE1:Hg19::chr3:50655081..50655137,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:50655081..50655137,+ to FFCP PHASE1:Hg19::chr3:50655081..50655137,+: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7867 | |EntrezGene=7867 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6888 | |HGNC=6888 | ||
|TSSclassifier=strong | |||
|UniProt=Q16644,B5BUJ8 | |UniProt=Q16644,B5BUJ8 | ||
|association_with_transcript=84bp_to_AB451303,AB451434_5end | |||
|cluster_id=chr3:50655081..50655137,+ | |||
|coexpression_cluster_id=C4336 | |||
|description=CAGE_peak_4_at_MAPKAPK3_5end | |||
|id=chr3:50655081..50655137,+ | |||
|ontology_enrichment_celltype=CL:0000766!1.09e-29!76;CL:0000763!5.28e-29!112;CL:0000049!5.28e-29!112;CL:0002057!6.27e-26!42;CL:0000860!1.81e-24!45;CL:0000557!2.99e-24!71;CL:0000839!1.44e-23!70;CL:0002194!5.84e-22!63;CL:0000576!5.84e-22!63;CL:0000040!5.84e-22!63;CL:0000559!5.84e-22!63;CL:0002009!3.30e-21!65;CL:0000037!4.91e-19!172;CL:0000566!4.91e-19!172;CL:0000988!1.90e-18!182;CL:0002032!2.25e-16!165;CL:0000837!2.25e-16!165;CL:0000738!1.56e-15!140;CL:0002031!1.64e-10!124;CL:0002087!5.41e-10!119;CL:0002393!1.44e-07!9;CL:0002397!1.44e-07!9;CL:0002320!3.39e-07!365;CL:0000134!6.03e-07!358;CL:0000094!6.75e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.80e-31;33!CL:0002057;1.80e-31;33!CL:0000576;1.22e-25;48!CL:0000473;3.58e-25;39!CL:0000234;3.58e-25;39!CL:0000766;3.25e-22;69!CL:0000763;6.96e-15;100!CL:0000094;2.62e-11;8!CL:0002393;1.03e-08;6!CL:0002397;1.03e-08;6!CL:0000081;1.45e-07;11!CL:0000738;2.88e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,2.06e-54,72;CL:0000763,1.32e-48,108;CL:0000049,1.32e-48,108;CL:0000860,4.58e-46,42;CL:0002057,4.58e-46,42;CL:0000473,5.62e-44,48;CL:0000234,5.62e-44,48;CL:0000557,9.21e-44,67;CL:0000839,1.34e-42,66;CL:0002194,1.73e-41,59;CL:0000576,1.73e-41,59;CL:0000040,1.73e-41,59;CL:0000559,1.73e-41,59;CL:0002009,1.63e-39,61;CL:0000037,4.19e-32,168;CL:0000988,5.51e-29,177;CL:0002032,5.05e-28,161;CL:0000837,5.05e-28,161;CL:0000738,1.46e-27,136;CL:0002087,2.92e-19,115;CL:0002031,1.01e-18,120;CL:0002393,1.68e-12,9;CL:0002397,1.68e-12,9;CL:0000094,2.75e-11,8;CL:0000134,6.30e-11,354;CL:0002320,1.60e-10,361;CL:0000219,6.74e-08,386;CL:0000081,1.50e-07,11 | |||
|ontology_enrichment_development_v019=CL:0002057;8.99e-33;42!CL:0000049;8.03e-14;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.57e-29!102;UBERON:0003061!1.57e-29!102;UBERON:0002371!2.21e-26!80;UBERON:0001474!2.31e-24!86;UBERON:0002193!2.34e-24!112;UBERON:0004765!7.92e-22!101;UBERON:0001434!7.92e-22!101;UBERON:0002405!3.55e-14!115;UBERON:0003081!4.46e-12!216;UBERON:0002204!6.78e-10!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,8.80e-48,98;UBERON:0003061,8.80e-48,98;UBERON:0002371,1.96e-45,76;UBERON:0002193,3.18e-42,108;UBERON:0001474,7.09e-42,82;UBERON:0004765,2.71e-37,90;UBERON:0002405,8.02e-37,93;UBERON:0001434,1.96e-32,100;UBERON:0003081,1.93e-20,203;UBERON:0002204,6.43e-15,167;UBERON:0000926,2.01e-10,315;UBERON:0004120,2.01e-10,315;UBERON:0006603,2.01e-10,315;UBERON:0002384,3.43e-10,371 | |||
|phase1_expression=0.181678379270557,0.428201047781966,0.140954404095971,0,0,0,0,0.631719873426831,0.261185628199839,0.737201809504527,3.48900583986214,0,0.263766978228454,0.495065411840187,0,0.672325146451775,0.602694528023977,0,0,0.246242116153576,1.02000345622126,0.313454721478088,0.286235987131057,0.136874425072884,0.251085279189606,0.458480434487708,0.164201178899891,0.236132343941038,17.3080281813518,9.21190555433311,11.4563931253896,1.83884244895785,0.90361775633475,2.21852406100073,0,0,8.22081230137572,9.41792194504192,13.0353890855592,8.68043482863407,0,0.971680998056939,0.515151135268373,6.54292074508041,3.77875943688809,5.82201746850759,5.81072592264212,2.87817521615278,5.88442104700697,4.02769349251011,6.91633907628572,10.4052181150977,6.89491361473237,6.45484683583826,8.12558919566051,6.40023954444856,4.36649840092553,3.59557575112135,3.67300670845083,5.1348644332175,3.83602275479425,7.25672860410775,3.78980949481101,8.52449501065388,3.19230162491442,3.40431134814684,7.4738669879469,9.79869794501299,8.34372669472322,12.8141418376019,3.63239701580021,4.05105399586321,7.27863491114034,13.5203383239643,14.2444880976579,9.22498040236854,4.94245977044578,7.65902153491682,2.25015821375912,22.8010194992999,20.8862511059045,21.0063776829329,0,0,0,0.426730222566507,0,0,0,0,0,0.587237189370939,0,1.32171328579026,1.12101712596307,3.68737718685108,0.393419540227666,0.786021525498329,1.02800749499755,3.51091640320424,0.32592226663359,0.946895611469467,0,0.779873198196215,0.294605907474837,0,1.08321545506006,1.92136979588513,2.60118695119756,0.986627427622057,1.38175008892924,0.289803085735052,0.14828656316206,0.535081656179426,0,1.24640276967323,0,0,0.506039384039006,0,0,0.950452044448374,0.602300476311091,0.255973222308837,0,0.236777252044017,0,0.201606743224732,0.534880391567015,0,0,0,0,0.722878304769133,0,0,0.795285947051099,0,0.472674085820339,0.221729397462564,0.43917392846563,0.72038491523742,0.364295288292542,0.370784442784429,2.27183175558278,1.74129737299267,2.52620124985844,5.96226560763355,3.43196946468077,4.45749001595478,0.198762407366705,0,0,0,0,0.275118041940067,0.208994966536811,0.258416759169329,0,0,0,0,0,0,0,0.0892997282840798,0,0.112611480483322,0,0,0,13.1780417436063,11.6334079244498,0,0,0.12663051166458,0,0,0.354668382198357,0.560677600142307,1.06748995729705,0.24666754841716,0.622422070799533,0,0,0.302714855289863,0.576175924479999,0,2.18512053781224,1.1409436430889,1.94283284717341,1.17434498643765,0.647491777472526,0.421352420106746,0.816616685019573,0.122834317311768,0.723280468230358,0,0.247266929278557,0,0,0.673344455816265,0.875829639103749,0.554128230968366,0,1.22595118319608,0,0,0.179389635688862,0,0,0.600182192168805,0.515262646192195,0,0,0,0,0.252433774244115,0.184099797284599,0.323292113637624,0,0.302256294682921,0.339121184620975,0.193260853163297,0.272746120590835,0.573609190778008,0.365921118388786,0.530119073285941,0.348581828608555,0.621966330092223,0.756962552626885,0.36497735907583,0,0.643240938192885,1.38134921352481,0.464367928031979,0,0.236613600079688,0.168584690078102,0.241011029883482,0.110293972732394,0,0.237270619111097,0.404493924480493,0.196221465125346,1.15424147083917,0,0,0,0,0,0.982827216677626,0,0.882926198829301,0.245976877086227,0.343135620597051,0.329250856225877,1.1240175325762,1.20634766893957,0.0925884451585296,0.651616610620649,1.03993478527958,0,0.115930404975077,0,0,0,0,0,0,1.96973604869918,0.936017060556951,2.22946743433092,0.93733833986777,0.503946384596579,0.425325291727159,2.23896306757121,0.871901815541886,0.766765358330422,0.985326475791887,3.78608266256872,6.21984346622316,6.05303804351238,4.29224273649692,0.063497894292169,0.381988425558278,0,0,0.205654985406647,0,0,0.112131084345361,0,0,0,3.57656445851882,0.845302752556,0.26593811658487,0,1.02882949704857,1.41849132023278,0.532844358032199,0.142977993658148,2.17048642156577,0.823240336780769,0,0,0,0.301439377059586,0,0.199945982364114,0,1.50677127429638,0,0.239624855491583,0,0,0.434343920002738,1.02738161275192,0,2.4658731678576,1.18218456121156,0.431255149719035,1.02674429023799,0,0,0,0,1.27587750330633,16.478154526838,20.9413021442817,10.7748033493369,0.36807447515742,1.00034104211935,0.271265023699736,0,0,0.315404830067869,0.234282829985426,0.300946099727719,0,1.03473071292505,0,0.368738337083406,0.260650843404249,0.587403472388222,0.686286847621712,3.51505644408909,7.76571122947021,2.77491650288955,0.606255142892519,0,1.5119514666484,0.248107807818777,0,0.280660094433074,0.256278298511402,0.511707249066704,0,1.48418066444991,0.154209693802656,0.177561725313127,0.492762936082855,1.03850885836724,0.697262270759755,0.362578348774867,0.40101294060657,0.184161977871793,0.229628896329213,0,0.393373244878272,4.06079651616671,0.539107359730903,1.56869953835371,7.30696123266303,1.68882606228601,0,0.170093705276516,0,0,0.541892875087706,0.501689773854853,3.3133915495855,1.66215201785745,6.26849313222099,0.657779629937804,0,2.56450125116389,0.328014645699706,2.60302715731442,0.103041011647722,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| ||
|short_description=p4@MAPKAPK3 | |||
}} | }} |
Latest revision as of 20:40, 18 September 2015
Short description: | p4@MAPKAPK3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_MAPKAPK3_5end |
Coexpression cluster: | C4336_heart_CD14CD16_Alveolar_CD14_Mammary_Renal_left |
Association with transcript: | 84bp_to_AB451303, AB451434_5end |
EntrezGene: | MAPKAPK3 |
HGNC: | 6888 |
UniProt: | Q16644B5BUJ8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 2.06e-54 | 72 |
myeloid cell | 1.32e-48 | 108 |
common myeloid progenitor | 1.32e-48 | 108 |
classical monocyte | 4.58e-46 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.58e-46 | 42 |
defensive cell | 5.62e-44 | 48 |
phagocyte | 5.62e-44 | 48 |
granulocyte monocyte progenitor cell | 9.21e-44 | 67 |
myeloid lineage restricted progenitor cell | 1.34e-42 | 66 |
monopoietic cell | 1.73e-41 | 59 |
monocyte | 1.73e-41 | 59 |
monoblast | 1.73e-41 | 59 |
promonocyte | 1.73e-41 | 59 |
macrophage dendritic cell progenitor | 1.63e-39 | 61 |
hematopoietic stem cell | 4.19e-32 | 168 |
hematopoietic cell | 5.51e-29 | 177 |
hematopoietic oligopotent progenitor cell | 5.05e-28 | 161 |
hematopoietic multipotent progenitor cell | 5.05e-28 | 161 |
leukocyte | 1.46e-27 | 136 |
nongranular leukocyte | 2.92e-19 | 115 |
hematopoietic lineage restricted progenitor cell | 1.01e-18 | 120 |
intermediate monocyte | 1.68e-12 | 9 |
CD14-positive, CD16-positive monocyte | 1.68e-12 | 9 |
granulocyte | 2.75e-11 | 8 |
mesenchymal cell | 6.30e-11 | 354 |
connective tissue cell | 1.60e-10 | 361 |
motile cell | 6.74e-08 | 386 |
blood cell | 1.50e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 8.80e-48 | 98 |
blood island | 8.80e-48 | 98 |
bone marrow | 1.96e-45 | 76 |
hemolymphoid system | 3.18e-42 | 108 |
bone element | 7.09e-42 | 82 |
skeletal element | 2.71e-37 | 90 |
immune system | 8.02e-37 | 93 |
skeletal system | 1.96e-32 | 100 |
lateral plate mesoderm | 1.93e-20 | 203 |
musculoskeletal system | 6.43e-15 | 167 |
mesoderm | 2.01e-10 | 315 |
mesoderm-derived structure | 2.01e-10 | 315 |
presumptive mesoderm | 2.01e-10 | 315 |
connective tissue | 3.43e-10 | 371 |