FFCP PHASE1:Hg19::chr4:76928654..76928668,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr4:76928654..76928668,- to FFCP PHASE1:Hg19::chr4:76928654..76928668,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4283 | |EntrezGene=4283 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7098 | |HGNC=7098 | ||
|TSSclassifier=strong | |||
|UniProt=Q07325 | |UniProt=Q07325 | ||
|association_with_transcript=-13bp_to_ENST00000264888,NM_002416,uc003hjh.1_5end | |||
|cluster_id=chr4:76928654..76928668,- | |||
|coexpression_cluster_id=C7 | |||
|description=CAGE_peak_1_at_CXCL9_5end | |||
|id=chr4:76928654..76928668,- | |||
|ontology_enrichment_celltype=CL:0002057!4.97e-24!42;CL:0002009!1.49e-23!65;CL:0002194!3.07e-23!63;CL:0000576!3.07e-23!63;CL:0000040!3.07e-23!63;CL:0000559!3.07e-23!63;CL:0000860!1.28e-21!45;CL:0000557!2.31e-21!71;CL:0000839!1.65e-20!70;CL:0000766!5.94e-20!76;CL:0002087!5.41e-14!119;CL:0002031!8.55e-13!124;CL:0000738!4.54e-12!140;CL:0000763!7.93e-10!112;CL:0000049!7.93e-10!112;CL:0002393!4.42e-07!9;CL:0002397!4.42e-07!9;CL:0000037!5.40e-07!172;CL:0000566!5.40e-07!172;CL:0002032!5.86e-07!165;CL:0000837!5.86e-07!165 | |||
|ontology_enrichment_celltype_v019=CL:0000576;8.58e-17;48!CL:0000860;3.70e-14;33!CL:0002057;3.70e-14;33!CL:0000473;7.01e-12;39!CL:0000234;7.01e-12;39!CL:0002393;1.27e-08;6!CL:0002397;1.27e-08;6!CL:0002619;3.93e-08;3!CL:0000766;7.01e-08;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0002009,2.89e-20,61;CL:0000473,1.02e-19,48;CL:0000234,1.02e-19,48;CL:0000860,1.37e-19,42;CL:0002057,1.37e-19,42;CL:0002194,1.89e-19,59;CL:0000576,1.89e-19,59;CL:0000040,1.89e-19,59;CL:0000559,1.89e-19,59;CL:0000557,8.99e-18,67;CL:0000839,1.28e-16,66;CL:0000766,6.17e-16,72;CL:0002087,1.43e-09,115;CL:0000763,4.16e-09,108;CL:0000049,4.16e-09,108;CL:0002031,6.34e-09,120;CL:0000738,2.41e-08,136;CL:0002619,4.03e-08,3 | |||
|ontology_enrichment_development_v019=CL:0002057;1.12e-13;42!UBERON:0004872;5.37e-08;7!UBERON:0006603;4.93e-07;65 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.75e-39!115;UBERON:0002390!3.61e-22!102;UBERON:0003061!3.61e-22!102;UBERON:0002193!1.37e-21!112;UBERON:0002405!1.25e-17!115;UBERON:0002371!2.65e-17!80;UBERON:0001474!4.18e-15!86;UBERON:0004765!6.95e-13!101;UBERON:0001434!6.95e-13!101;UBERON:0003081!6.65e-09!216;UBERON:0000062!3.21e-08!511 | |||
|ontology_enrichment_uberon_v019=UBERON:0004177;4.16e-08;5!UBERON:0005057;4.16e-08;5!UBERON:0003978;5.93e-07;3!UBERON:0000946;5.93e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.90e-21,114;UBERON:0002405,3.58e-18,93;UBERON:0002193,2.02e-15,108;UBERON:0002390,2.51e-15,98;UBERON:0003061,2.51e-15,98;UBERON:0002371,8.76e-15,76;UBERON:0001474,3.64e-13,82;UBERON:0004765,2.35e-11,90;UBERON:0003081,8.70e-10,203;UBERON:0001434,1.60e-09,100;UBERON:0003978,6.61e-07,3;UBERON:0009751,6.61e-07,3;UBERON:0000946,6.61e-07,3;UBERON:0002523,6.61e-07,3;UBERON:0005983,6.61e-07,3;UBERON:0002165,6.61e-07,3;UBERON:0002062,6.61e-07,3;UBERON:0007280,6.61e-07,3 | |||
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| ||
|short_description=p1@CXCL9 | |||
}} | }} |
Latest revision as of 17:03, 18 September 2015
Short description: | p1@CXCL9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CXCL9_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | -13bp_to_ENST00000264888, NM_002416, uc003hjh.1_5end |
EntrezGene: | CXCL9 |
HGNC: | 7098 |
UniProt: | Q07325 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage dendritic cell progenitor | 2.89e-20 | 61 |
defensive cell | 1.02e-19 | 48 |
phagocyte | 1.02e-19 | 48 |
classical monocyte | 1.37e-19 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.37e-19 | 42 |
monopoietic cell | 1.89e-19 | 59 |
monocyte | 1.89e-19 | 59 |
monoblast | 1.89e-19 | 59 |
promonocyte | 1.89e-19 | 59 |
granulocyte monocyte progenitor cell | 8.99e-18 | 67 |
myeloid lineage restricted progenitor cell | 1.28e-16 | 66 |
myeloid leukocyte | 6.17e-16 | 72 |
nongranular leukocyte | 1.43e-09 | 115 |
myeloid cell | 4.16e-09 | 108 |
common myeloid progenitor | 4.16e-09 | 108 |
hematopoietic lineage restricted progenitor cell | 6.34e-09 | 120 |
leukocyte | 2.41e-08 | 136 |
adult endothelial progenitor cell | 4.03e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.90e-21 | 114 |
immune system | 3.58e-18 | 93 |
hemolymphoid system | 2.02e-15 | 108 |
hematopoietic system | 2.51e-15 | 98 |
blood island | 2.51e-15 | 98 |
bone marrow | 8.76e-15 | 76 |
bone element | 3.64e-13 | 82 |
skeletal element | 2.35e-11 | 90 |
lateral plate mesoderm | 8.70e-10 | 203 |
skeletal system | 1.60e-09 | 100 |
valve | 6.61e-07 | 3 |
cardiac mesenchyme | 6.61e-07 | 3 |
cardial valve | 6.61e-07 | 3 |
tunica intima | 6.61e-07 | 3 |
heart layer | 6.61e-07 | 3 |
endocardium | 6.61e-07 | 3 |
endocardial cushion | 6.61e-07 | 3 |
presumptive endocardium | 6.61e-07 | 3 |