FFCP PHASE1:Hg19::chr7:73868220..73868272,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr7:73868220..73868272,+ to FFCP PHASE1:Hg19::chr7:73868220..73868272,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9569 | |EntrezGene=9569 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4661 | |HGNC=4661 | ||
|TSSclassifier=strong | |||
|UniProt=Q6DSU6 | |UniProt=Q6DSU6 | ||
|association_with_transcript=-27bp_to_ENST00000455841_5end | |||
|cluster_id=chr7:73868220..73868272,+ | |||
|description=CAGE_peak_1_at_GTF2IRD1_5end | |||
|id=chr7:73868220..73868272,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.13e-18!254;CL:0002321!4.59e-17!248;CL:0000220!2.52e-16!246;CL:0000221!3.11e-12!71;CL:0000133!5.89e-12!59;CL:0000223!7.33e-10!59;CL:0000333!8.62e-10!41;CL:0002076!4.24e-08!43 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.27e-18,253;CL:0002321,5.03e-17,250;CL:0000221,3.75e-12,72;CL:0000133,5.45e-12,59;CL:0000223,4.79e-10,58;CL:0000333,8.11e-10,41;CL:0002076,2.98e-08,42 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!5.02e-15!143;DOID:3095!2.86e-09!22;DOID:2994!2.86e-09!22;DOID:305!4.83e-09!106;DOID:162!5.32e-09!235;DOID:14566!1.53e-08!239 | |||
|ontology_enrichment_disease_v019=DOID:3095;2.32e-09;22!DOID:2994;2.32e-09;22 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,6.18e-15,143;DOID:3095,2.35e-09,22;DOID:2994,2.35e-09,22;DOID:162,5.21e-09,235;DOID:305,6.33e-09,106;DOID:14566,1.68e-08,239 | |||
|ontology_enrichment_uberon=UBERON:0000475!1.57e-12!365;UBERON:0000481!1.07e-11!347;UBERON:0000924!1.77e-10!173;UBERON:0006601!1.77e-10!173;UBERON:0004121!3.31e-09!169;UBERON:0001032!5.98e-09!24;UBERON:0004456!5.98e-09!24;UBERON:0000020!2.20e-08!23;UBERON:0001444!3.50e-08!48;UBERON:0000922!4.27e-08!612;UBERON:0004119!5.21e-08!169;UBERON:0000925!5.21e-08!169;UBERON:0006595!5.21e-08!169;UBERON:0002104!8.61e-08!21;UBERON:0000468!1.08e-07!659;UBERON:0000483!1.71e-07!309;UBERON:0000119!2.08e-07!312;UBERON:0000970!3.13e-07!20;UBERON:0003104!5.83e-07!238;UBERON:0009142!5.83e-07!238;UBERON:0000466!7.39e-07!126;UBERON:0004921!7.48e-07!129;UBERON:0004185!7.48e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0001032;7.04e-09;24!UBERON:0004456;7.04e-09;24!UBERON:0000020;2.65e-08;23!UBERON:0002104;1.05e-07;21!UBERON:0000970;3.90e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,8.19e-10,171;UBERON:0000924,8.19e-10,171;UBERON:0006601,8.19e-10,171;UBERON:0000020,5.67e-09,24;UBERON:0001032,5.67e-09,24;UBERON:0004456,5.67e-09,24;UBERON:0001444,1.14e-08,49;UBERON:0011216,1.44e-08,223;UBERON:0000033,3.14e-08,56;UBERON:0000970,8.23e-08,21;UBERON:0002104,8.23e-08,21;UBERON:0004119,1.08e-07,160;UBERON:0000925,1.08e-07,160;UBERON:0006595,1.08e-07,160;UBERON:0000483,2.93e-07,306;UBERON:0000019,3.02e-07,20;UBERON:0000047,3.02e-07,20;UBERON:0010312,3.02e-07,20;UBERON:0004088,3.02e-07,20;UBERON:0010230,3.02e-07,20;UBERON:0003072,3.02e-07,20;UBERON:0004128,3.02e-07,20;UBERON:0003071,3.02e-07,20;UBERON:0000119,3.56e-07,309;UBERON:0001456,4.16e-07,22;UBERON:0000922,5.01e-07,592 | |||
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| ||
|short_description=p1@GTF2IRD1 | |||
}} | }} |
Latest revision as of 11:37, 19 September 2015
Short description: | p1@GTF2IRD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GTF2IRD1_5end |
Coexpression cluster: | NA |
Association with transcript: | -27bp_to_ENST00000455841_5end |
EntrezGene: | GTF2IRD1 |
HGNC: | 4661 |
UniProt: | Q6DSU6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.27e-18 | 253 |
embryonic cell | 5.03e-17 | 250 |
ectodermal cell | 3.75e-12 | 72 |
neurectodermal cell | 5.45e-12 | 59 |
endodermal cell | 4.79e-10 | 58 |
migratory neural crest cell | 8.11e-10 | 41 |
endo-epithelial cell | 2.98e-08 | 42 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 8.19e-10 | 171 |
ectoderm | 8.19e-10 | 171 |
presumptive ectoderm | 8.19e-10 | 171 |
sense organ | 5.67e-09 | 24 |
sensory system | 5.67e-09 | 24 |
entire sense organ system | 5.67e-09 | 24 |
subdivision of head | 1.14e-08 | 49 |
organ system subdivision | 1.44e-08 | 223 |
head | 3.14e-08 | 56 |
eye | 8.23e-08 | 21 |
visual system | 8.23e-08 | 21 |
endoderm-derived structure | 1.08e-07 | 160 |
endoderm | 1.08e-07 | 160 |
presumptive endoderm | 1.08e-07 | 160 |
epithelium | 2.93e-07 | 306 |
camera-type eye | 3.02e-07 | 20 |
simple eye | 3.02e-07 | 20 |
immature eye | 3.02e-07 | 20 |
ocular region | 3.02e-07 | 20 |
eyeball of camera-type eye | 3.02e-07 | 20 |
optic cup | 3.02e-07 | 20 |
optic vesicle | 3.02e-07 | 20 |
eye primordium | 3.02e-07 | 20 |
cell layer | 3.56e-07 | 309 |
face | 4.16e-07 | 22 |
embryo | 5.01e-07 | 592 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 6.18e-15 | 143 |
germ cell and embryonal cancer | 2.35e-09 | 22 |
germ cell cancer | 2.35e-09 | 22 |
cancer | 5.21e-09 | 235 |
carcinoma | 6.33e-09 | 106 |
disease of cellular proliferation | 1.68e-08 | 239 |