FFCP PHASE1:Hg19::chr8:30585294..30585386,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr8:30585294..30585386,- to FFCP PHASE1:Hg19::chr8:30585294..30585386,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2936 | |EntrezGene=2936 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4623 | |HGNC=4623 | ||
|TSSclassifier=strong | |||
|UniProt=C8KIM0,C8KIL9,C8KIL8 | |UniProt=C8KIM0,C8KIL9,C8KIL8 | ||
|association_with_transcript=0bp_to_ENST00000537535,ENST00000541648,ENST00000546342_5end | |||
|cluster_id=chr8:30585294..30585386,- | |||
|description=CAGE_peak_1_at_GSR_5end | |||
|id=chr8:30585294..30585386,- | |||
|ontology_enrichment_celltype=CL:0000763!1.27e-15!112;CL:0000049!1.27e-15!112;CL:0000766!5.06e-15!76;CL:0000839!3.34e-14!70;CL:0000548!8.20e-13!679;CL:0000004!8.20e-13!679;CL:0000255!8.20e-13!679;CL:0002194!9.23e-13!63;CL:0000576!9.23e-13!63;CL:0000040!9.23e-13!63;CL:0000559!9.23e-13!63;CL:0000012!4.53e-12!682;CL:0000557!5.39e-12!71;CL:0002009!3.85e-11!65;CL:0000144!1.00e-09!625;CL:0002371!7.47e-09!591;CL:0000063!2.67e-08!578;CL:0002057!3.30e-08!42;CL:0000860!3.63e-08!45 | |||
|ontology_enrichment_celltype_v019=CL:0000473;9.38e-09;39!CL:0000234;9.38e-09;39!CL:0000860;9.76e-08;33!CL:0002057;9.76e-08;33!CL:0000766;2.70e-07;69!CL:0000576;4.67e-07;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000763,6.71e-16,108;CL:0000049,6.71e-16,108;CL:0000766,1.71e-15,72;CL:0000839,1.08e-14,66;CL:0002194,2.98e-13,59;CL:0000576,2.98e-13,59;CL:0000040,2.98e-13,59;CL:0000559,2.98e-13,59;CL:0000557,2.24e-12,67;CL:0002009,1.57e-11,61;CL:0000473,1.09e-10,48;CL:0000234,1.09e-10,48;CL:0000860,3.30e-08,42;CL:0002057,3.30e-08,42 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!2.02e-16!448;UBERON:0004120!2.02e-16!448;UBERON:0006603!2.02e-16!448;UBERON:0002405!1.10e-13!115;UBERON:0002371!1.42e-11!80;UBERON:0009569!5.17e-11!113;UBERON:0002417!6.01e-11!61;UBERON:0000916!6.01e-11!61;UBERON:0001474!1.38e-10!86;UBERON:0005172!1.60e-10!55;UBERON:0005173!1.60e-10!55;UBERON:0002390!4.44e-10!102;UBERON:0003061!4.44e-10!102;UBERON:0002193!1.71e-09!112;UBERON:0005177!7.20e-09!107;UBERON:0004765!1.12e-08!101;UBERON:0001434!1.12e-08!101;UBERON:0003081!3.31e-08!216;UBERON:0002100!1.36e-07!216;UBERON:0002204!1.43e-07!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,7.02e-12,76;UBERON:0002417,4.24e-11,60;UBERON:0000916,4.24e-11,60;UBERON:0001474,7.96e-11,82;UBERON:0009569,1.04e-10,112;UBERON:0005172,1.11e-10,54;UBERON:0005173,1.11e-10,54;UBERON:0002405,3.03e-10,93;UBERON:0002390,3.03e-10,98;UBERON:0003061,3.03e-10,98;UBERON:0004765,4.84e-10,90;UBERON:0005177,8.87e-10,101;UBERON:0002193,1.28e-09,108;UBERON:0000926,1.69e-09,315;UBERON:0004120,1.69e-09,315;UBERON:0006603,1.69e-09,315;UBERON:0001434,2.53e-09,100;UBERON:0002100,6.08e-09,199;UBERON:0002204,5.31e-08,167;UBERON:0003104,3.64e-07,160;UBERON:0009142,3.64e-07,160;UBERON:0002113,7.30e-07,26;UBERON:0003918,7.30e-07,26;UBERON:0011143,7.30e-07,26;UBERON:0005095,7.30e-07,26;UBERON:0007687,7.30e-07,26 | |||
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| ||
|short_description=p1@GSR | |||
}} | }} |
Latest revision as of 23:49, 17 September 2015
Short description: | p1@GSR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GSR_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000537535, ENST00000541648, ENST00000546342_5end |
EntrezGene: | GSR |
HGNC: | 4623 |
UniProt: | C8KIM0C8KIL9C8KIL8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid cell | 6.71e-16 | 108 |
common myeloid progenitor | 6.71e-16 | 108 |
myeloid leukocyte | 1.71e-15 | 72 |
myeloid lineage restricted progenitor cell | 1.08e-14 | 66 |
monopoietic cell | 2.98e-13 | 59 |
monocyte | 2.98e-13 | 59 |
monoblast | 2.98e-13 | 59 |
promonocyte | 2.98e-13 | 59 |
granulocyte monocyte progenitor cell | 2.24e-12 | 67 |
macrophage dendritic cell progenitor | 1.57e-11 | 61 |
defensive cell | 1.09e-10 | 48 |
phagocyte | 1.09e-10 | 48 |
classical monocyte | 3.30e-08 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.30e-08 | 42 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 7.02e-12 | 76 |
abdominal segment of trunk | 4.24e-11 | 60 |
abdomen | 4.24e-11 | 60 |
bone element | 7.96e-11 | 82 |
subdivision of trunk | 1.04e-10 | 112 |
abdomen element | 1.11e-10 | 54 |
abdominal segment element | 1.11e-10 | 54 |
immune system | 3.03e-10 | 93 |
hematopoietic system | 3.03e-10 | 98 |
blood island | 3.03e-10 | 98 |
skeletal element | 4.84e-10 | 90 |
trunk region element | 8.87e-10 | 101 |
hemolymphoid system | 1.28e-09 | 108 |
mesoderm | 1.69e-09 | 315 |
mesoderm-derived structure | 1.69e-09 | 315 |
presumptive mesoderm | 1.69e-09 | 315 |
skeletal system | 2.53e-09 | 100 |
trunk | 6.08e-09 | 199 |
musculoskeletal system | 5.31e-08 | 167 |
mesenchyme | 3.64e-07 | 160 |
entire embryonic mesenchyme | 3.64e-07 | 160 |
kidney | 7.30e-07 | 26 |
kidney mesenchyme | 7.30e-07 | 26 |
upper urinary tract | 7.30e-07 | 26 |
kidney rudiment | 7.30e-07 | 26 |
kidney field | 7.30e-07 | 26 |