FFCP PHASE1:Hg19::chr9:134585260..134585273,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr9:134585260..134585273,- to FFCP PHASE1:Hg19::chr9:134585260..134585273,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2889 | |EntrezGene=2889 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4568 | |HGNC=4568 | ||
|TSSclassifier=strong | |||
|UniProt=F5H4P5,E9PDT1,F5H704,C9JL20,Q5JUE5,E7ETL5,Q13905 | |UniProt=F5H4P5,E9PDT1,F5H704,C9JL20,Q5JUE5,E7ETL5,Q13905 | ||
|association_with_transcript=-31bp_to_ENST00000337036,ENST00000372190,ENST00000372191,ENST00000398415,ENST00000411834,ENST00000427994,ENST00000437236,NM_198679,uc004cbb.2_5end | |||
|cluster_id=chr9:134585260..134585273,- | |||
|description=CAGE_peak_8_at_RAPGEF1_5end | |||
|id=chr9:134585260..134585273,- | |||
|ontology_enrichment_celltype=CL:0002057!1.80e-21!42;CL:0000860!2.29e-19!45;CL:0002009!2.41e-15!65;CL:0002194!4.11e-15!63;CL:0000576!4.11e-15!63;CL:0000040!4.11e-15!63;CL:0000559!4.11e-15!63;CL:0000557!3.58e-13!71;CL:0000766!1.13e-12!76;CL:0000839!1.35e-12!70;CL:0002087!1.40e-09!119;CL:0000738!4.75e-09!140;CL:0002031!1.09e-08!124;CL:0000763!1.54e-07!112;CL:0000049!1.54e-07!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.70e-11;33!CL:0002057;2.70e-11;33!CL:0000473;4.87e-09;39!CL:0000234;4.87e-09;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.06e-11,48;CL:0000234,1.06e-11,48;CL:0000860,2.81e-11,42;CL:0002057,2.81e-11,42;CL:0002194,6.01e-09,59;CL:0000576,6.01e-09,59;CL:0000040,6.01e-09,59;CL:0000559,6.01e-09,59;CL:0002009,1.36e-08,61;CL:0000766,1.95e-08,72;CL:0000839,8.41e-08,66;CL:0000557,1.17e-07,67 | |||
|ontology_enrichment_development_v019=CL:0002057;5.48e-09;42!UBERON:0010227;3.40e-07;1!UBERON:0010226;3.40e-07;1!UBERON:0004140;3.40e-07;1!UBERON:0000358;4.42e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:114;4.17e-12;2 | |||
|ontology_enrichment_disease_v019_2=DOID:114,2.14e-12,2;DOID:178,5.26e-07,1;DOID:326,5.26e-07,1;DOID:3978,5.26e-07,1;DOID:3394,5.26e-07,1;DOID:5844,5.26e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!3.48e-31!115;UBERON:0002020!6.26e-11!34;UBERON:0003528!6.26e-11!34;UBERON:0001893!9.61e-11!34;UBERON:0002308!1.28e-10!9;UBERON:0000125!1.28e-10!9;UBERON:0002371!1.43e-10!80;UBERON:0002791!3.34e-10!33;UBERON:0002780!6.49e-10!41;UBERON:0001890!6.49e-10!41;UBERON:0006240!6.49e-10!41;UBERON:0003080!1.55e-09!42;UBERON:0002193!1.69e-09!112;UBERON:0001869!1.79e-09!32;UBERON:0001049!2.38e-09!57;UBERON:0005068!2.38e-09!57;UBERON:0006241!2.38e-09!57;UBERON:0007135!2.38e-09!57;UBERON:0001474!3.59e-09!86;UBERON:0009663!4.30e-09!7;UBERON:0002405!5.52e-09!115;UBERON:0002616!8.65e-09!59;UBERON:0002390!1.28e-08!102;UBERON:0003061!1.28e-08!102;UBERON:0002420!1.89e-08!9;UBERON:0007245!1.89e-08!9;UBERON:0010009!1.89e-08!9;UBERON:0010011!1.89e-08!9;UBERON:0000454!1.89e-08!9;UBERON:0003075!8.70e-08!86;UBERON:0007284!8.70e-08!86;UBERON:0002346!4.50e-07!90;UBERON:0004765!5.23e-07!101;UBERON:0001434!5.23e-07!101;UBERON:0000955!6.68e-07!69;UBERON:0006238!6.68e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0007100;4.38e-13;25!UBERON:0004151;9.31e-09;3!UBERON:0003978;4.22e-08;3!UBERON:0000946;4.22e-08;3!UBERON:0005383;4.22e-08;3!UBERON:0005382;4.22e-08;3!UBERON:0009663;1.92e-07;7!UBERON:0002084;3.40e-07;1!UBERON:0002079;3.40e-07;1!UBERON:0002082;3.40e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007100,4.00e-12,27;UBERON:0004151,8.67e-09,3;UBERON:0003978,4.55e-08,3;UBERON:0009751,4.55e-08,3;UBERON:0000946,4.55e-08,3;UBERON:0002523,4.55e-08,3;UBERON:0005983,4.55e-08,3;UBERON:0002165,4.55e-08,3;UBERON:0002062,4.55e-08,3;UBERON:0007280,4.55e-08,3;UBERON:0005383,6.06e-08,3;UBERON:0005382,6.06e-08,3;UBERON:0009663,2.64e-07,7;UBERON:0002084,3.13e-07,1;UBERON:0002082,3.13e-07,1;UBERON:0010226,3.13e-07,1;UBERON:0002079,3.32e-07,1;UBERON:0002405,3.70e-07,93;UBERON:0002146,7.82e-07,1;UBERON:0005623,7.82e-07,1 | |||
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| ||
|short_description=p8@RAPGEF1 | |||
}} | }} |
Latest revision as of 03:35, 16 September 2015
Short description: | p8@RAPGEF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_RAPGEF1_5end |
Coexpression cluster: | NA |
Association with transcript: | -31bp_to_ENST00000337036, ENST00000372190, ENST00000372191, ENST00000398415, ENST00000411834, ENST00000427994, ENST00000437236, NM_198679, uc004cbb.2_5end |
EntrezGene: | RAPGEF1 |
HGNC: | 4568 |
UniProt: | F5H4P5E9PDT1F5H704C9JL20Q5JUE5E7ETL5Q13905 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.06e-11 | 48 |
phagocyte | 1.06e-11 | 48 |
classical monocyte | 2.81e-11 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.81e-11 | 42 |
monopoietic cell | 6.01e-09 | 59 |
monocyte | 6.01e-09 | 59 |
monoblast | 6.01e-09 | 59 |
promonocyte | 6.01e-09 | 59 |
macrophage dendritic cell progenitor | 1.36e-08 | 61 |
myeloid leukocyte | 1.95e-08 | 72 |
myeloid lineage restricted progenitor cell | 8.41e-08 | 66 |
granulocyte monocyte progenitor cell | 1.17e-07 | 67 |
Ontology term | p-value | n |
---|---|---|
primary circulatory organ | 4.00e-12 | 27 |
cardiac chamber | 8.67e-09 | 3 |
valve | 4.55e-08 | 3 |
cardiac mesenchyme | 4.55e-08 | 3 |
cardial valve | 4.55e-08 | 3 |
tunica intima | 4.55e-08 | 3 |
heart layer | 4.55e-08 | 3 |
endocardium | 4.55e-08 | 3 |
endocardial cushion | 4.55e-08 | 3 |
presumptive endocardium | 4.55e-08 | 3 |
caudate-putamen | 6.06e-08 | 3 |
dorsal striatum | 6.06e-08 | 3 |
telencephalic nucleus | 2.64e-07 | 7 |
heart left ventricle | 3.13e-07 | 1 |
cardiac ventricle | 3.13e-07 | 1 |
future cardiac ventricle | 3.13e-07 | 1 |
left cardiac atrium | 3.32e-07 | 1 |
immune system | 3.70e-07 | 93 |
pulmonary valve | 7.82e-07 | 1 |
semi-lunar valve | 7.82e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
heart disease | 2.14e-12 | 2 |
vascular disease | 5.26e-07 | 1 |
ischemia | 5.26e-07 | 1 |
extrinsic cardiomyopathy | 5.26e-07 | 1 |
myocardial ischemia | 5.26e-07 | 1 |
myocardial infarction | 5.26e-07 | 1 |