FFCP PHASE1:Hg19::chr11:62456995..62457013,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=221091 | |EntrezGene=221091 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=33724 | |HGNC=33724 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=186bp_to_uc001nun.2_5end | |association_with_transcript=186bp_to_uc001nun.2_5end | ||
|cluster_id=chr11:62456995..62457013,- | |||
|description=CAGE_peak_1_at_LRRN4CL_5end | |description=CAGE_peak_1_at_LRRN4CL_5end | ||
|id=chr11:62456995..62457013,- | |id=chr11:62456995..62457013,- | ||
|ontology_enrichment_celltype=CL:0000055!4.30e-31!180;CL:0000057!1.26e-19!75;CL:0000680!3.67e-10!57;CL:0000056!3.67e-10!57;CL:0000355!3.67e-10!57;CL:0000136!6.57e-10!15;CL:0000187!1.78e-09!54;CL:0002620!7.03e-09!23;CL:0000183!9.71e-09!59;CL:0000393!3.14e-08!60;CL:0000211!3.14e-08!60;CL:0000192!5.13e-07!42;CL:0000514!5.13e-07!42 | |ontology_enrichment_celltype=CL:0000055!4.30e-31!180;CL:0000057!1.26e-19!75;CL:0000680!3.67e-10!57;CL:0000056!3.67e-10!57;CL:0000355!3.67e-10!57;CL:0000136!6.57e-10!15;CL:0000187!1.78e-09!54;CL:0002620!7.03e-09!23;CL:0000183!9.71e-09!59;CL:0000393!3.14e-08!60;CL:0000211!3.14e-08!60;CL:0000192!5.13e-07!42;CL:0000514!5.13e-07!42 | ||
|ontology_enrichment_celltype_v019=CL:0000136;1.02e-09;13!CL:0002620;1.05e-09;23!CL:0000057;2.36e-08;73!CL:0002320;6.71e-07;188!CL:0000134;8.02e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.48e-20,76;CL:0000136,6.78e-11,15;CL:0000680,7.16e-10,58;CL:0000056,7.16e-10,58;CL:0000355,7.16e-10,58;CL:0002620,9.59e-10,23;CL:0000187,3.95e-09,55;CL:0000393,5.65e-07,61;CL:0000211,5.65e-07,61;CL:0000192,9.04e-07,43;CL:0000514,9.04e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!6.68e-17!83;UBERON:0002329!6.68e-17!83;UBERON:0003077!6.68e-17!83;UBERON:0003059!6.68e-17!83;UBERON:0007282!6.68e-17!83;UBERON:0009618!6.68e-17!83;UBERON:0007285!6.68e-17!83;UBERON:0004290!9.35e-15!70;UBERON:0003102!2.18e-14!95;UBERON:0000486!4.22e-12!82;UBERON:0002385!4.52e-12!63;UBERON:0001015!4.52e-12!63;UBERON:0000383!4.52e-12!63;UBERON:0000475!1.45e-11!365;UBERON:0001134!2.11e-11!61;UBERON:0002036!2.11e-11!61;UBERON:0003082!2.11e-11!61;UBERON:0002199!1.80e-09!45;UBERON:0002416!1.80e-09!45;UBERON:0005256!7.45e-09!143;UBERON:0007023!1.42e-08!115;UBERON:0001013!1.19e-07!14;UBERON:0002097!1.66e-07!40;UBERON:0000468!2.86e-07!659;UBERON:0000481!3.44e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;3.64e-09;31!UBERON:0001015;3.64e-09;31!UBERON:0000383;3.64e-09;31!UBERON:0002384;8.31e-09;198!UBERON:0001013;1.34e-07;14!UBERON:0002199;4.86e-07;46!UBERON:0002416;4.86e-07;46!UBERON:0003102;8.00e-07;50 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,2.46e-15,73;UBERON:0003077,7.51e-15,72;UBERON:0007285,7.51e-15,72;UBERON:0002329,8.10e-15,71;UBERON:0003059,8.10e-15,71;UBERON:0007282,8.10e-15,71;UBERON:0004290,8.10e-15,71;UBERON:0009618,8.10e-15,71;UBERON:0003102,4.48e-14,99;UBERON:0002385,6.36e-12,64;UBERON:0001015,6.36e-12,64;UBERON:0000383,6.36e-12,64;UBERON:0007503,1.06e-11,78;UBERON:0000486,1.16e-11,83;UBERON:0001134,3.33e-11,62;UBERON:0002036,3.33e-11,62;UBERON:0003082,3.33e-11,62;UBERON:0002199,2.07e-10,46;UBERON:0002416,2.07e-10,46;UBERON:0005256,2.94e-09,122;UBERON:0003104,5.15e-09,160;UBERON:0009142,5.15e-09,160;UBERON:0002097,3.16e-08,41;UBERON:0001013,1.23e-07,14;UBERON:0004923,8.77e-07,66 | |||
|phase1_expression=8.17552706717505,87.9953153191941,39.044369934584,14.0102617694383,34.4160042709012,13.0850778615055,86.1219585772256,44.2203911398782,140.779053599713,0,0,0,0,39.728999300175,28.8315716883287,2.6893005858071,6.62963980826375,6.57279081348636,4.87932798790507,0.369363174230364,1.83600622119828,0.940364164434263,1.14494394852423,1.09499540058307,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,2.68280343881454,0.255725123687061,15.1804444001518,10.5280961233537,24.0445221474967,6.36228757640879,12.1658717575659,0.283604451492204,0,0.175669571386252,12.0500749457896,1.45718115317017,0,0,0,0,0,0,0,0,2.58070378531837,0,0,0,0,0,0,0,0,2.81980521976403,0,6.58967555380058,0,0,0,0,0,0,0,0.183201743930407,0,0,0,19.8788780678127,6.83804762988731,33.1022952033047,94.3692482263597,14.1867352879343,5.04609840128076,1.06748995729705,0.49333509683432,1.8672662123986,0,0.326923806226917,3.93529311876822,5.18558332031999,39.6003219799116,36.5227289891475,6.84566185853339,39.4544516656755,7.51580791320095,11.6548519945055,5.75848307479219,29.8065090032144,8.47556789451199,43.3968280938215,81.9721971524617,32.1447008062124,2.73048408581408,5.03032699271367,9.59515849538177,3.62843707628696,22.719257469703,10.9744405220209,10.4205850571667,17.127138715352,0.113432183160021,6.09924761342131,46.7690681512663,22.8886453252327,6.90209520994125,22.5685039032181,9.01741890159702,16.7505170698431,4.38818463827292,1.94874010322397,5.04867548488229,47.4977476994265,65.9515911820752,22.0105947360301,7.55640736707302,2.03472710772585,0.193260853163297,0,0.286804595389004,0,0,0,0.207322110030741,0,0,18.7739438795779,71.3997441394103,15.1948413487729,21.825292617503,58.4722380152364,0.236613600079688,0,0,0,0,0,0,0,0,0,0,6.9967581926338,16.1709582524096,0,0,1.18157981336281,0,0,0,0,1.1240175325762,0.201057944823262,2.40729957412177,90.5747088762703,5.19967392639789,0,0.115930404975077,0.117408694235822,0.288732895522148,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0.383382679165211,0,0,3.31724984865235,0.720599767084807,1.51490920111656,10.7946420296687,4.20187268114105,23.4434894420094,32.503764744314,5.75833959138612,27.0308752059526,4.28739648945867,1.12131084345361,0.43596006883328,0.4400297149257,0.646358578788889,82.260982545933,1.690605505112,32.4444502233542,21.8415617513869,2.31486636835928,0,1.0656887160644,6.86294369559108,1.62786481617433,0,0.977208552881205,7.10783897485092,1.58390374586686,6.63166629531089,4.35766729300147,5.89840647974137,0,0,0,1.19812427745791,11.4861935834114,14.2636905040718,10.5690353867333,4.9314317412092,6.26713371339634,0,0,0,0,0.254094624222463,0,0,0.335032530668698,0.637938751653163,0,0,0,4.53958519360818,6.5022167737758,36.892043223164,1.87173775377726,16.9507539357304,10.4083593922397,11.831282914264,42.4334000616084,52.3037259328765,88.9868413115542,1.99267679560631,3.50301420229236,62.1217843446792,10.3774613455252,17.5003146143537,0,0,0,0.303127571446259,1.66435439510497,1.81434175997808,21.5853792802336,6.44540287809862,7.01650236082684,46.0019545827966,9.72243773226737,9.65123526861645,17.8101679733989,2.92998418225046,8.5229628150301,18.6428644151347,5.71179872101983,9.29683027679674,0,0,0.184161977871793,14.5814349169051,22.0330313288128,75.2654141867094,0,0.15403067420883,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0.656029291399411,0,1.23649213977267,0.0915694648183434,0,0.574265537996172,0,24.1025894766239,100.827559178683,3.38906957652218,3.99109554287937,7.71884805913371,6.66005518183296,6.23571783831183,8.09652960452959,11.8412607410161,0,0,0,0,0.929691098594572,18.8887408098384,2.7881490806424,3.08033580176089,2.12922412126809,0,0.9266210955196,0,28.6561944406944,6.32758849437452,18.6817590045348,72.1631771497962,91.578943439259,20.046804619334,0,114.398883022988,42.5532396090885,39.1137175787679,0.808729926293264,0,1.26377536871694,27.7951231281066,8.52997213709495,1.05650146756755,23.0684850279496,33.9373036688911,47.463408980502,0.551365343546124,1.99031692572366,1.75380354101505,48.0383693441351,92.4811600385752,0,4.02770547529675,0.563391205064483,3.72869515730534,5.01070109166918,0,16.3190089472475,219.763048344868,241.373156539608,7.5894634753143,13.2975193693094,0,0,0,2.35359501941948,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.3459150140377,0,0,0,0.71623345421307,0.890894042497916,2.15012491469462,0.994147647766298,0.140669416410513,1.33570446027487,0,0,14.7443511305792,9.39365312805902,0,0,0,17.729256496723,0,0,0,29.3957348798062,0,2.22273980289274,0.969332746095218,1.39152147242777,0,0,0,18.1249893858698,0,0,0,0,0.874813840149763,0,0,0.482385754501632,0,0.552896299656123,1.18219047581419,5.70402032600329,0,0,47.1705084628276,3.07643550786903,0,0,0,7.97502899329799,47.8139437557721,3.73124343213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| ||
|short_description=p1@LRRN4CL | |short_description=p1@LRRN4CL | ||
}} | }} |
Latest revision as of 20:42, 18 September 2015
Short description: | p1@LRRN4CL |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LRRN4CL_5end |
Coexpression cluster: | NA |
Association with transcript: | 186bp_to_uc001nun.2_5end |
EntrezGene: | LRRN4CL |
HGNC: | 33724 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.48e-20 | 76 |
fat cell | 6.78e-11 | 15 |
muscle precursor cell | 7.16e-10 | 58 |
myoblast | 7.16e-10 | 58 |
multi-potent skeletal muscle stem cell | 7.16e-10 | 58 |
skin fibroblast | 9.59e-10 | 23 |
muscle cell | 3.95e-09 | 55 |
electrically responsive cell | 5.65e-07 | 61 |
electrically active cell | 5.65e-07 | 61 |
smooth muscle cell | 9.04e-07 | 43 |
smooth muscle myoblast | 9.04e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 2.46e-15 | 73 |
paraxial mesoderm | 7.51e-15 | 72 |
presumptive paraxial mesoderm | 7.51e-15 | 72 |
somite | 8.10e-15 | 71 |
presomitic mesoderm | 8.10e-15 | 71 |
presumptive segmental plate | 8.10e-15 | 71 |
dermomyotome | 8.10e-15 | 71 |
trunk paraxial mesoderm | 8.10e-15 | 71 |
surface structure | 4.48e-14 | 99 |
muscle tissue | 6.36e-12 | 64 |
musculature | 6.36e-12 | 64 |
musculature of body | 6.36e-12 | 64 |
epithelial vesicle | 1.06e-11 | 78 |
multilaminar epithelium | 1.16e-11 | 83 |
skeletal muscle tissue | 3.33e-11 | 62 |
striated muscle tissue | 3.33e-11 | 62 |
myotome | 3.33e-11 | 62 |
integument | 2.07e-10 | 46 |
integumental system | 2.07e-10 | 46 |
trunk mesenchyme | 2.94e-09 | 122 |
mesenchyme | 5.15e-09 | 160 |
entire embryonic mesenchyme | 5.15e-09 | 160 |
skin of body | 3.16e-08 | 41 |
adipose tissue | 1.23e-07 | 14 |
organ component layer | 8.77e-07 | 66 |