FFCP PHASE1:Hg19::chr12:51923800..51923807,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:51923800..51923807,+ | |||
|coexpression_cluster_id=C106 | |||
|description=CAGE_peak_at_chr12:51923800..51923807,+ | |description=CAGE_peak_at_chr12:51923800..51923807,+ | ||
|id=chr12:51923800..51923807,+ | |id=chr12:51923800..51923807,+ | ||
|ontology_enrichment_celltype=CL:0002563!3.01e-10!4 | |ontology_enrichment_celltype=CL:0002563!3.01e-10!4 | ||
|ontology_enrichment_celltype_v019=CL:0002563;1.71e-17;4!CL:0002253;1.44e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,1.71e-17,4;CL:0002253,1.44e-09,2;CL:0000066,1.64e-08,253 | |||
|ontology_enrichment_development_v019=UBERON:0008947;2.00e-45;29!UBERON:0006595;1.71e-08;86 | |||
|ontology_enrichment_disease=DOID:305!1.69e-12!106;DOID:0050687!3.27e-10!143;DOID:5093!7.48e-10!4;DOID:1612!7.48e-10!4 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,7.36e-15,106;DOID:0050687,8.40e-11,143 | |||
|ontology_enrichment_uberon=UBERON:0001737!3.72e-82!9;UBERON:0001557!2.38e-38!19;UBERON:0008947!1.41e-18!38;UBERON:0003258!1.41e-18!38;UBERON:0000072!3.96e-15!46;UBERON:0004921!1.93e-13!129;UBERON:0004185!1.93e-13!129;UBERON:0000065!5.80e-13!53;UBERON:0001007!8.89e-11!155;UBERON:0001555!8.89e-11!155;UBERON:0007026!8.89e-11!155;UBERON:0007029!2.50e-10!1;UBERON:0001242!3.01e-10!4;UBERON:0001262!3.01e-10!4;UBERON:0004786!3.01e-10!4;UBERON:0004808!3.01e-10!4;UBERON:0001277!3.01e-10!4;UBERON:0004119!1.11e-09!169;UBERON:0000925!1.11e-09!169;UBERON:0006595!1.11e-09!169;UBERON:0001004!3.34e-09!72;UBERON:0003350!2.28e-08!5;UBERON:0000063!4.56e-08!97;UBERON:0000160!5.42e-08!27;UBERON:0000077!6.95e-07!130 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;4.66e-147;9!UBERON:0001557;4.66e-147;9!UBERON:0000072;5.92e-33;37!UBERON:0000065;7.77e-28;44!UBERON:0001242;1.71e-17;4!UBERON:0001262;1.71e-17;4!UBERON:0004786;1.71e-17;4!UBERON:0004808;1.71e-17;4!UBERON:0001277;1.71e-17;4!UBERON:0001004;1.38e-14;65!UBERON:0000485;2.04e-10;7!UBERON:0003929;2.04e-10;7!UBERON:0003350;3.14e-09;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,4.28e-147,9;UBERON:0001557,1.51e-69,19;UBERON:0008947,1.43e-34,38;UBERON:0003258,1.43e-34,38;UBERON:0000072,7.45e-28,47;UBERON:0000065,3.57e-24,54;UBERON:0004921,3.80e-19,118;UBERON:0001242,1.71e-17,4;UBERON:0001262,1.71e-17,4;UBERON:0004786,1.71e-17,4;UBERON:0004808,1.71e-17,4;UBERON:0001277,1.71e-17,4;UBERON:0001004,1.77e-17,74;UBERON:0001007,1.88e-15,145;UBERON:0001555,1.88e-15,145;UBERON:0007026,1.88e-15,145;UBERON:0001041,9.05e-15,87;UBERON:0004119,6.26e-14,160;UBERON:0000925,6.26e-14,160;UBERON:0006595,6.26e-14,160;UBERON:0011216,1.33e-09,223;UBERON:0003350,3.14e-09,8;UBERON:0000485,2.65e-08,9;UBERON:0001048,1.10e-07,160 | |||
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|short_description=p@chr12:51923800..51923807,+ | |short_description=p@chr12:51923800..51923807,+ | ||
}} | }} |
Latest revision as of 09:22, 24 July 2015
Short description: | p@chr12:51923800..51923807, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:51923800..51923807, + |
Coexpression cluster: | C106_Hep2_epitheloid_placenta_cervical_rectal_anaplastic_glassy |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 1.71e-17 | 4 |
epithelial cell of large intestine | 1.44e-09 | 2 |
epithelial cell | 1.64e-08 | 253 |
Ontology term | p-value | n |
---|---|---|
larynx | 4.28e-147 | 9 |
upper respiratory tract | 1.51e-69 | 19 |
respiratory primordium | 1.43e-34 | 38 |
endoderm of foregut | 1.43e-34 | 38 |
segment of respiratory tract | 7.45e-28 | 47 |
respiratory tract | 3.57e-24 | 54 |
subdivision of digestive tract | 3.80e-19 | 118 |
intestinal mucosa | 1.71e-17 | 4 |
wall of intestine | 1.71e-17 | 4 |
gastrointestinal system mucosa | 1.71e-17 | 4 |
gastrointestinal system epithelium | 1.71e-17 | 4 |
intestinal epithelium | 1.71e-17 | 4 |
respiratory system | 1.77e-17 | 74 |
digestive system | 1.88e-15 | 145 |
digestive tract | 1.88e-15 | 145 |
primitive gut | 1.88e-15 | 145 |
foregut | 9.05e-15 | 87 |
endoderm-derived structure | 6.26e-14 | 160 |
endoderm | 6.26e-14 | 160 |
presumptive endoderm | 6.26e-14 | 160 |
organ system subdivision | 1.33e-09 | 223 |
epithelium of mucosa | 3.14e-09 | 8 |
simple columnar epithelium | 2.65e-08 | 9 |
primordium | 1.10e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 7.36e-15 | 106 |
cell type cancer | 8.40e-11 | 143 |