FFCP PHASE1:Hg19::chr12:93399852..93399859,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:93399852..93399859,+ | |||
|coexpression_cluster_id=C228 | |||
|description=CAGE_peak_at_chr12:93399852..93399859,+ | |description=CAGE_peak_at_chr12:93399852..93399859,+ | ||
|id=chr12:93399852..93399859,+ | |id=chr12:93399852..93399859,+ | ||
|ontology_enrichment_celltype=CL:0000181!1.19e-24!12;CL:0000417!1.19e-24!12;CL:0000668!1.19e-24!12;CL:0000414!1.19e-24!12;CL:0000412!1.19e-24!12;CL:0000182!1.19e-24!12;CL:0002563!4.29e-19!4;CL:0002322!2.90e-15!5;CL:0000223!9.04e-15!59;CL:0002253!1.57e-10!2;CL:0000148!4.19e-08!10;CL:0000541!4.19e-08!10;CL:0002231!2.97e-07!3 | |ontology_enrichment_celltype=CL:0000181!1.19e-24!12;CL:0000417!1.19e-24!12;CL:0000668!1.19e-24!12;CL:0000414!1.19e-24!12;CL:0000412!1.19e-24!12;CL:0000182!1.19e-24!12;CL:0002563!4.29e-19!4;CL:0002322!2.90e-15!5;CL:0000223!9.04e-15!59;CL:0002253!1.57e-10!2;CL:0000148!4.19e-08!10;CL:0000541!4.19e-08!10;CL:0002231!2.97e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000182;1.04e-37;12!CL:0002253;6.30e-26;2!CL:0002563;1.06e-13;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.11e-37,12;CL:0002253,5.56e-26,2;CL:0000223,1.72e-14,58;CL:0002563,1.00e-13,4 | |||
|ontology_enrichment_development_v019=UBERON:0004161;4.99e-41;11!UBERON:0009497;6.70e-35;13!UBERON:0003104;5.80e-26;31!UBERON:0001041;9.84e-16;30!CL:0000223;2.47e-07;58 | |||
|ontology_enrichment_disease=DOID:7!7.92e-08!39 | |||
|ontology_enrichment_disease_v019=DOID:7;6.89e-11;39 | |||
|ontology_enrichment_disease_v019_2=DOID:7,2.57e-12,39;DOID:305,2.62e-08,106 | |||
|ontology_enrichment_uberon=UBERON:0001242!4.29e-19!4;UBERON:0001262!4.29e-19!4;UBERON:0004786!4.29e-19!4;UBERON:0004808!4.29e-19!4;UBERON:0001277!4.29e-19!4;UBERON:0003929!3.66e-16!54;UBERON:0002107!9.86e-16!19;UBERON:0006925!9.86e-16!19;UBERON:0008836!9.86e-16!19;UBERON:0003350!1.75e-15!5;UBERON:0008835!1.22e-13!22;UBERON:0003894!1.22e-13!22;UBERON:0009854!4.62e-13!23;UBERON:0007499!4.80e-12!25;UBERON:0009497!4.80e-12!25;UBERON:0000015!4.80e-12!25;UBERON:0002423!4.80e-12!25;UBERON:0006235!4.80e-12!25;UBERON:0004161!4.80e-12!25;UBERON:0005057!1.35e-11!26;UBERON:0009856!1.35e-11!26;UBERON:0005911!1.54e-10!82;UBERON:0002365!8.92e-10!31;UBERON:0002330!8.92e-10!31;UBERON:0000485!5.00e-09!9;UBERON:0002368!1.08e-08!35;UBERON:0002530!8.86e-08!59;UBERON:0000344!5.47e-07!12;UBERON:0000060!5.47e-07!12;UBERON:0000949!8.13e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;3.08e-24;19!UBERON:0006925;3.08e-24;19!UBERON:0002423;1.12e-18;25!UBERON:0002368;4.06e-14;33!UBERON:0002365;4.06e-14;31!UBERON:0002330;4.06e-14;31!UBERON:0001052;1.06e-13;4!UBERON:0001242;1.06e-13;4!UBERON:0001262;1.06e-13;4!UBERON:0004786;1.06e-13;4!UBERON:0004808;1.06e-13;4!UBERON:0001277;1.06e-13;4!UBERON:0004907;3.10e-11;5!UBERON:0000949;1.55e-10;43!UBERON:0000485;2.11e-08;7!UBERON:0003929;2.11e-08;7!UBERON:0002417;4.66e-08;58!UBERON:0000916;4.66e-08;58!UBERON:0003350;1.64e-07;8!UBERON:0001155;8.14e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,3.20e-24,19;UBERON:0006925,3.20e-24,19;UBERON:0008836,3.20e-24,19;UBERON:0008835,4.58e-21,22;UBERON:0003894,4.58e-21,22;UBERON:0009854,3.39e-20,23;UBERON:0007499,1.15e-18,25;UBERON:0009497,1.15e-18,25;UBERON:0000015,1.15e-18,25;UBERON:0002423,1.15e-18,25;UBERON:0006235,1.15e-18,25;UBERON:0004161,1.15e-18,25;UBERON:0009856,5.50e-18,26;UBERON:0003929,1.70e-15,54;UBERON:0002365,3.01e-15,31;UBERON:0002330,3.01e-15,31;UBERON:0001052,1.00e-13,4;UBERON:0001242,1.00e-13,4;UBERON:0001262,1.00e-13,4;UBERON:0004786,1.00e-13,4;UBERON:0004808,1.00e-13,4;UBERON:0001277,1.00e-13,4;UBERON:0002368,1.29e-13,35;UBERON:0004907,2.94e-11,5;UBERON:0000949,8.49e-11,45;UBERON:0005911,1.66e-10,82;UBERON:0005172,3.82e-09,54;UBERON:0005173,3.82e-09,54;UBERON:0002530,1.93e-08,59;UBERON:0002417,2.58e-08,60;UBERON:0000916,2.58e-08,60;UBERON:0003350,1.59e-07,8;UBERON:0004921,1.75e-07,118;UBERON:0001155,7.91e-07,9;UBERON:0000485,7.91e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0.756962552626885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27217764290547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451961481561065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16495949527454,0.787831823072237,1.31865373409866,1.01105315781277,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126698501011437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0.756962552626885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27217764290547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451961481561065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16495949527454,0.787831823072237,1.31865373409866,1.01105315781277,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126698501011437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr12:93399852..93399859,+ | |short_description=p@chr12:93399852..93399859,+ | ||
}} | }} |
Latest revision as of 13:39, 24 July 2015
Short description: | p@chr12:93399852..93399859, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:93399852..93399859, + |
Coexpression cluster: | C228_colon_Intestinal_Prostate_hepatoblastoma_hepatocellular_testis_adult |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.11e-37 | 12 |
epithelial cell of large intestine | 5.56e-26 | 2 |
endodermal cell | 1.72e-14 | 58 |
intestinal epithelial cell | 1.00e-13 | 4 |
Ontology term | p-value | n |
---|---|---|
liver | 3.20e-24 | 19 |
digestive gland | 3.20e-24 | 19 |
liver bud | 3.20e-24 | 19 |
hepatic diverticulum | 4.58e-21 | 22 |
liver primordium | 4.58e-21 | 22 |
digestive tract diverticulum | 3.39e-20 | 23 |
epithelial sac | 1.15e-18 | 25 |
epithelium of foregut-midgut junction | 1.15e-18 | 25 |
anatomical boundary | 1.15e-18 | 25 |
hepatobiliary system | 1.15e-18 | 25 |
foregut-midgut junction | 1.15e-18 | 25 |
septum transversum | 1.15e-18 | 25 |
sac | 5.50e-18 | 26 |
gut epithelium | 1.70e-15 | 54 |
exocrine gland | 3.01e-15 | 31 |
exocrine system | 3.01e-15 | 31 |
rectum | 1.00e-13 | 4 |
intestinal mucosa | 1.00e-13 | 4 |
wall of intestine | 1.00e-13 | 4 |
gastrointestinal system mucosa | 1.00e-13 | 4 |
gastrointestinal system epithelium | 1.00e-13 | 4 |
intestinal epithelium | 1.00e-13 | 4 |
endocrine gland | 1.29e-13 | 35 |
lower digestive tract | 2.94e-11 | 5 |
endocrine system | 8.49e-11 | 45 |
endo-epithelium | 1.66e-10 | 82 |
abdomen element | 3.82e-09 | 54 |
abdominal segment element | 3.82e-09 | 54 |
gland | 1.93e-08 | 59 |
abdominal segment of trunk | 2.58e-08 | 60 |
abdomen | 2.58e-08 | 60 |
epithelium of mucosa | 1.59e-07 | 8 |
subdivision of digestive tract | 1.75e-07 | 118 |
colon | 7.91e-07 | 9 |
simple columnar epithelium | 7.91e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
disease of anatomical entity | 2.57e-12 | 39 |
carcinoma | 2.62e-08 | 106 |