FFCP PHASE1:Hg19::chr6:35181783..35181815,+: Difference between revisions
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|ontology_enrichment_celltype=CL:0000055!5.35e-32!180;CL:0000057!3.47e-14!75;CL:0000680!5.98e-11!57;CL:0000056!5.98e-11!57;CL:0000355!5.98e-11!57;CL:0000183!1.19e-10!59;CL:0000187!7.59e-10!54;CL:0002334!1.48e-09!12;CL:0000393!5.40e-09!60;CL:0000211!5.40e-09!60;CL:0002620!7.16e-09!23;CL:0000499!2.75e-08!27 | |ontology_enrichment_celltype=CL:0000055!5.35e-32!180;CL:0000057!3.47e-14!75;CL:0000680!5.98e-11!57;CL:0000056!5.98e-11!57;CL:0000355!5.98e-11!57;CL:0000183!1.19e-10!59;CL:0000187!7.59e-10!54;CL:0002334!1.48e-09!12;CL:0000393!5.40e-09!60;CL:0000211!5.40e-09!60;CL:0002620!7.16e-09!23;CL:0000499!2.75e-08!27 | ||
|ontology_enrichment_celltype_v019=CL:0002334;3.58e-12;12!CL:0002620;1.09e-11;23!CL:0000499;2.08e-08;28!CL:0000188;7.36e-08;9!CL:0000062;1.35e-07;9!CL:0000057;2.86e-07;73!CL:0000327;5.97e-07;15!CL:0002570;9.90e-07;8 | |ontology_enrichment_celltype_v019=CL:0002334;3.58e-12;12!CL:0002620;1.09e-11;23!CL:0000499;2.08e-08;28!CL:0000188;7.36e-08;9!CL:0000062;1.35e-07;9!CL:0000057;2.86e-07;73!CL:0000327;5.97e-07;15!CL:0002570;9.90e-07;8 | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.22e-16,76;CL:0002334,3.66e-12,12;CL:0002620,7.25e-12,23;CL:0000680,1.06e-08,58;CL:0000056,1.06e-08,58;CL:0000355,1.06e-08,58;CL:0000499,1.77e-08,28;CL:0000188,7.20e-08,9;CL:0000187,1.70e-07,55;CL:0000048,3.01e-07,427;CL:0000327,4.75e-07,15;CL:0002570,9.36e-07,8 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004290!8.71e-14!70;UBERON:0000486!1.20e-12!82;UBERON:0000914!1.46e-12!83;UBERON:0002329!1.46e-12!83;UBERON:0003077!1.46e-12!83;UBERON:0003059!1.46e-12!83;UBERON:0007282!1.46e-12!83;UBERON:0009618!1.46e-12!83;UBERON:0007285!1.46e-12!83;UBERON:0002385!6.03e-11!63;UBERON:0001015!6.03e-11!63;UBERON:0000383!6.03e-11!63;UBERON:0001134!1.43e-10!61;UBERON:0002036!1.43e-10!61;UBERON:0003082!1.43e-10!61;UBERON:0005256!1.67e-09!143;UBERON:0002100!6.47e-09!216;UBERON:0000475!1.36e-08!365;UBERON:0002199!1.95e-08!45;UBERON:0002416!1.95e-08!45;UBERON:0001013!3.21e-07!14;UBERON:0004923!8.18e-07!57 | |ontology_enrichment_uberon=UBERON:0004290!8.71e-14!70;UBERON:0000486!1.20e-12!82;UBERON:0000914!1.46e-12!83;UBERON:0002329!1.46e-12!83;UBERON:0003077!1.46e-12!83;UBERON:0003059!1.46e-12!83;UBERON:0007282!1.46e-12!83;UBERON:0009618!1.46e-12!83;UBERON:0007285!1.46e-12!83;UBERON:0002385!6.03e-11!63;UBERON:0001015!6.03e-11!63;UBERON:0000383!6.03e-11!63;UBERON:0001134!1.43e-10!61;UBERON:0002036!1.43e-10!61;UBERON:0003082!1.43e-10!61;UBERON:0005256!1.67e-09!143;UBERON:0002100!6.47e-09!216;UBERON:0000475!1.36e-08!365;UBERON:0002199!1.95e-08!45;UBERON:0002416!1.95e-08!45;UBERON:0001013!3.21e-07!14;UBERON:0004923!8.18e-07!57 | ||
|ontology_enrichment_uberon_v019=UBERON:0004457;2.70e-08;9!UBERON:0000042;2.70e-08;9!UBERON:0001013;1.15e-07;14!UBERON:0002097;2.84e-07;41!UBERON:0002199;4.94e-07;46!UBERON:0002416;4.94e-07;46!UBERON:0001134;6.35e-07;16!UBERON:0002036;6.35e-07;16 | |ontology_enrichment_uberon_v019=UBERON:0004457;2.70e-08;9!UBERON:0000042;2.70e-08;9!UBERON:0001013;1.15e-07;14!UBERON:0002097;2.84e-07;41!UBERON:0002199;4.94e-07;46!UBERON:0002416;4.94e-07;46!UBERON:0001134;6.35e-07;16!UBERON:0002036;6.35e-07;16 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002329,1.76e-11,71;UBERON:0003059,1.76e-11,71;UBERON:0007282,1.76e-11,71;UBERON:0004290,1.76e-11,71;UBERON:0009618,1.76e-11,71;UBERON:0002199,2.40e-11,46;UBERON:0002416,2.40e-11,46;UBERON:0003077,4.03e-11,72;UBERON:0007285,4.03e-11,72;UBERON:0007524,9.00e-11,73;UBERON:0007503,1.24e-10,78;UBERON:0000486,7.75e-10,83;UBERON:0002097,2.66e-09,41;UBERON:0003104,2.79e-09,160;UBERON:0009142,2.79e-09,160;UBERON:0005256,1.86e-08,122;UBERON:0002385,5.03e-08,64;UBERON:0001015,5.03e-08,64;UBERON:0000383,5.03e-08,64;UBERON:0001134,6.41e-08,62;UBERON:0002036,6.41e-08,62;UBERON:0003082,6.41e-08,62;UBERON:0001013,1.14e-07,14;UBERON:0002100,1.27e-07,199 | |||
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| ||
|short_description=p2@SCUBE3 | |short_description=p2@SCUBE3 | ||
}} | }} |
Revision as of 02:05, 21 November 2012
Short description: | p2@SCUBE3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_SCUBE3_5end |
Coexpression cluster: | C519_Preadipocyte_Ewing_Myoblast_spindle_Fibroblast_Adipocyte_Osteoblast |
Association with transcript: | -374bp_to_ENST00000394681, NM_152753, uc003okf.1, uc003okg.1_5end |
EntrezGene: | SCUBE3 |
HGNC: | 13655 |
UniProt: | Q8IX30Q8NAV8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.22e-16 | 76 |
preadipocyte | 3.66e-12 | 12 |
skin fibroblast | 7.25e-12 | 23 |
muscle precursor cell | 1.06e-08 | 58 |
myoblast | 1.06e-08 | 58 |
multi-potent skeletal muscle stem cell | 1.06e-08 | 58 |
stromal cell | 1.77e-08 | 28 |
cell of skeletal muscle | 7.20e-08 | 9 |
muscle cell | 1.70e-07 | 55 |
multi fate stem cell | 3.01e-07 | 427 |
extracellular matrix secreting cell | 4.75e-07 | 15 |
mesenchymal stem cell of adipose | 9.36e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
somite | 1.76e-11 | 71 |
presomitic mesoderm | 1.76e-11 | 71 |
presumptive segmental plate | 1.76e-11 | 71 |
dermomyotome | 1.76e-11 | 71 |
trunk paraxial mesoderm | 1.76e-11 | 71 |
integument | 2.40e-11 | 46 |
integumental system | 2.40e-11 | 46 |
paraxial mesoderm | 4.03e-11 | 72 |
presumptive paraxial mesoderm | 4.03e-11 | 72 |
dense mesenchyme tissue | 9.00e-11 | 73 |
epithelial vesicle | 1.24e-10 | 78 |
multilaminar epithelium | 7.75e-10 | 83 |
skin of body | 2.66e-09 | 41 |
mesenchyme | 2.79e-09 | 160 |
entire embryonic mesenchyme | 2.79e-09 | 160 |
trunk mesenchyme | 1.86e-08 | 122 |
muscle tissue | 5.03e-08 | 64 |
musculature | 5.03e-08 | 64 |
musculature of body | 5.03e-08 | 64 |
skeletal muscle tissue | 6.41e-08 | 62 |
striated muscle tissue | 6.41e-08 | 62 |
myotome | 6.41e-08 | 62 |
adipose tissue | 1.14e-07 | 14 |
trunk | 1.27e-07 | 199 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.