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MCL coexpression mm9:996: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0005153!8.62e-15!17;UBERON:0000160!9.57e-15!31;UBERON:0002048!4.41e-13!14;UBERON:0000117!4.41e-13!14;UBERON:0000171!4.41e-13!14;UBERON:0000170!4.41e-13!14;UBERON:0005597!4.41e-13!14;UBERON:0000118!4.41e-13!14;UBERON:0005157!5.58e-12!20;UBERON:0005178!3.23e-10!17;UBERON:0005181!3.23e-10!17;UBERON:0002224!3.23e-10!17;UBERON:0000915!3.23e-10!17;UBERON:0008947!3.23e-10!17;UBERON:0003258!3.23e-10!17;UBERON:0005409!7.83e-08!47;UBERON:0002108!4.84e-07!4
}}
}}

Revision as of 21:34, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr5:53440585..53440602,+p1@Slc34a2
Mm9::chr5:53450413..53450428,+p@chr5:53450413..53450428
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Mm9::chr5:53452606..53452617,+p@chr5:53452606..53452617
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Mm9::chr5:53452636..53452647,+p@chr5:53452636..53452647
+
Mm9::chr5:53455084..53455095,+p@chr5:53455084..53455095
+
Mm9::chr5:53455153..53455163,+p@chr5:53455153..53455163
+
Mm9::chr5:53458930..53458941,+p@chr5:53458930..53458941
+
Mm9::chr5:53461252..53461266,+p@chr5:53461252..53461266
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
epithelial bud8.62e-1517
intestine9.57e-1531
lung4.41e-1314
respiratory tube4.41e-1314
respiration organ4.41e-1314
pair of lungs4.41e-1314
lung primordium4.41e-1314
lung bud4.41e-1314
epithelial fold5.58e-1220
thoracic cavity element3.23e-1017
thoracic segment organ3.23e-1017
thoracic cavity3.23e-1017
thoracic segment of trunk3.23e-1017
respiratory primordium3.23e-1017
endoderm of foregut3.23e-1017
gastrointestinal system7.83e-0847
small intestine4.84e-074


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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