Personal tools

MCL coexpression mm9:1446: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 3: Line 3:
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202225222524901,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.534667770008399,0.405872009044185,0,0,0,0,0,0,0,0,0,0,0,0,0.519159387921689,0.665574485605428,0.58366142374821,0,0,0,0,0,0,0,0,0.107511441879825,0,0,0,0,0,0,0,0,0,0,0.0681426399143868,0.100004302423367,0,0.0347388317801137,0,0,0,0.0700056732683379,0,0.047967174931957,0,0,0.0934269919474624,0.0433296451889376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246267108541285,0.0509235292940968,0.0489274836994468,0,0,0,0,0,0,0,0,0,0.317612095126974,0.446367646180094,0.312961160848974,0.246445214188212,0.149291438599461,0.1796630500242,0.115484751605888,0.277159835989896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241359654229811,0.21269287216221,0.120770531187269,0,0.123500036840092,0.0756292965920817,0,0.0662136857075299,0,0.0394017081901728,0,0,0,0,0.46190037227896,0.307118618283481,0.4201107406784,0.56990784680718,0.371008010238558,0.385868989437643,0.636985469787435,0.430801527135261,0.541610864576225,0.555026733294788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10582914506561,0,0,0,0.0977676536600382,0,0,0,0,0,0,0,0,0,0,0.283595235982141,0.368062588194376,0.377150996817062,0.5364786697916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.373251962450767,0.183528544603783,0,0,0.0650059127791652,0.0722273824039347,0.0709781889361875,0.0660055475634404,0,0.105432160215428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233416463292174,0,0,0.526659546888176,0.475104994122486,0.460318560471952,0.486651066475027,0.429681439811579,0.573616978704359,0.281358555664415,0.167592876466424,0.0855952087835205,0.109925980570702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0383547285828163,0.411994239765005,0.512867274613611,0,0,0,0,0,0,0,0,0,0,0,0,0.134262448753013,0.145825435924841,0,0.0472542065752338,0.117349081168505,0,0.0435794416222198,0.040679966067952,0,0.0489230553888678,0.098117166361508,0.0375226752578547,0.0745542549075041,0.0396401807728516,0.0466475060481989,0.084586381933092,0.0690741623162511,0.03830369771457,0.074930558382725,0.0858532545793502,0,0.0354759961767123,0.0464368173027965,0.0589368614163519,0.0390607415003592,0.0515875539845187,0.0364791508700876,0.101427320830301,0.0798283833100081,0,0.0462322477344797,0.112441925220423,0.074491100723522,0.141505433941488,0.0383032227056179,0,0.12898833846516,0.119893946266008,0.0760168881589905,0,0
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202225222524901,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.534667770008399,0.405872009044185,0,0,0,0,0,0,0,0,0,0,0,0,0.519159387921689,0.665574485605428,0.58366142374821,0,0,0,0,0,0,0,0,0.107511441879825,0,0,0,0,0,0,0,0,0,0,0.0681426399143868,0.100004302423367,0,0.0347388317801137,0,0,0,0.0700056732683379,0,0.047967174931957,0,0,0.0934269919474624,0.0433296451889376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246267108541285,0.0509235292940968,0.0489274836994468,0,0,0,0,0,0,0,0,0,0.317612095126974,0.446367646180094,0.312961160848974,0.246445214188212,0.149291438599461,0.1796630500242,0.115484751605888,0.277159835989896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241359654229811,0.21269287216221,0.120770531187269,0,0.123500036840092,0.0756292965920817,0,0.0662136857075299,0,0.0394017081901728,0,0,0,0,0.46190037227896,0.307118618283481,0.4201107406784,0.56990784680718,0.371008010238558,0.385868989437643,0.636985469787435,0.430801527135261,0.541610864576225,0.555026733294788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10582914506561,0,0,0,0.0977676536600382,0,0,0,0,0,0,0,0,0,0,0.283595235982141,0.368062588194376,0.377150996817062,0.5364786697916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.373251962450767,0.183528544603783,0,0,0.0650059127791652,0.0722273824039347,0.0709781889361875,0.0660055475634404,0,0.105432160215428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233416463292174,0,0,0.526659546888176,0.475104994122486,0.460318560471952,0.486651066475027,0.429681439811579,0.573616978704359,0.281358555664415,0.167592876466424,0.0855952087835205,0.109925980570702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0383547285828163,0.411994239765005,0.512867274613611,0,0,0,0,0,0,0,0,0,0,0,0,0.134262448753013,0.145825435924841,0,0.0472542065752338,0.117349081168505,0,0.0435794416222198,0.040679966067952,0,0.0489230553888678,0.098117166361508,0.0375226752578547,0.0745542549075041,0.0396401807728516,0.0466475060481989,0.084586381933092,0.0690741623162511,0.03830369771457,0.074930558382725,0.0858532545793502,0,0.0354759961767123,0.0464368173027965,0.0589368614163519,0.0390607415003592,0.0515875539845187,0.0364791508700876,0.101427320830301,0.0798283833100081,0,0.0462322477344797,0.112441925220423,0.074491100723522,0.141505433941488,0.0383032227056179,0,0.12898833846516,0.119893946266008,0.0760168881589905,0,0
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000489!9.02e-18!21;UBERON:0005156!1.12e-15!26;UBERON:0000990!1.12e-15!26;UBERON:0003133!1.40e-15!24;UBERON:0000991!1.42e-12!18;UBERON:0005564!1.42e-12!18;UBERON:0006554!1.83e-12!18;UBERON:0004176!9.30e-12!17;UBERON:0009196!9.30e-12!17;UBERON:0009117!9.30e-12!17;UBERON:0002113!1.27e-11!14;UBERON:0003918!1.27e-11!14;UBERON:0011143!1.27e-11!14;UBERON:0005095!1.27e-11!14;UBERON:0007687!1.27e-11!14;UBERON:0001008!1.62e-11!19;UBERON:0003135!1.36e-09!15;UBERON:0000473!3.37e-09!14;UBERON:0003101!9.74e-09!16;UBERON:0000079!9.74e-09!16;UBERON:0010708!1.23e-07!8;UBERON:0000474!1.53e-07!9;UBERON:0002240!2.27e-07!6;UBERON:0005174!2.27e-07!6;UBERON:0001137!2.27e-07!6;UBERON:0003100!3.65e-07!11;UBERON:0010707!3.75e-07!13;UBERON:0002102!4.47e-07!7;UBERON:0004710!4.47e-07!7;UBERON:0005419!4.47e-07!7;UBERON:0005417!4.47e-07!7;UBERON:0005729!4.47e-07!7;UBERON:0001948!7.74e-07!5;UBERON:0002315!7.74e-07!5
}}
}}

Revision as of 16:54, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr2:74529815..74529836,-p@chr2:74529815..74529836
-
Mm9::chr2:74529917..74529926,+p5@Hoxd10
Mm9::chr2:74529942..74529953,+p4@Hoxd10
Mm9::chr2:74529970..74529997,+p1@Hoxd10
Mm9::chr2:74529998..74530020,+p2@Hoxd10
Mm9::chr2:74530022..74530033,+p3@Hoxd10


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
cavitated compound organ9.02e-1821
reproductive structure1.12e-1526
reproductive system1.12e-1526
reproductive organ1.40e-1524
gonad1.42e-1218
gonad primordium1.42e-1218
urinary system structure1.83e-1218
external genitalia9.30e-1217
indifferent external genitalia9.30e-1217
indifferent gonad9.30e-1217
kidney1.27e-1114
kidney mesenchyme1.27e-1114
upper urinary tract1.27e-1114
kidney rudiment1.27e-1114
kidney field1.27e-1114
renal system1.62e-1119
male reproductive organ1.36e-0915
testis3.37e-0914
male organism9.74e-0916
male reproductive system9.74e-0916
pectoral complex1.23e-078
female reproductive system1.53e-079
spinal cord2.27e-076
dorsal region element2.27e-076
dorsum2.27e-076
female organism3.65e-0711
appendage girdle complex3.75e-0713
forelimb4.47e-077
pectoral appendage4.47e-077
pectoral appendage bud4.47e-077
forelimb bud4.47e-077
forelimb/pectoral fin field4.47e-077
regional part of spinal cord7.74e-075
gray matter of spinal cord7.74e-075


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:1446&oldid=2153561"