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MCL coexpression mm9:3361: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0004119!2.92e-20!118;UBERON:0000925!2.92e-20!118;UBERON:0006595!2.92e-20!118;UBERON:0001007!3.24e-19!116;UBERON:0001555!3.24e-19!116;UBERON:0007026!3.24e-19!116;UBERON:0004921!6.01e-18!114;UBERON:0005409!1.37e-14!47;UBERON:0000160!4.26e-13!31;UBERON:0009569!9.99e-13!66;UBERON:0005177!1.36e-11!79;UBERON:0004923!7.95e-10!24;UBERON:0009854!9.86e-10!23;UBERON:0009856!9.86e-10!23;UBERON:0002100!1.37e-09!90;UBERON:0002107!3.10e-09!22;UBERON:0007499!3.10e-09!22;UBERON:0006925!3.10e-09!22;UBERON:0009497!3.10e-09!22;UBERON:0000015!3.10e-09!22;UBERON:0002423!3.10e-09!22;UBERON:0006235!3.10e-09!22;UBERON:0008835!3.10e-09!22;UBERON:0003894!3.10e-09!22;UBERON:0004161!3.10e-09!22;UBERON:0008836!3.10e-09!22;UBERON:0002365!8.55e-09!25;UBERON:0002330!8.55e-09!25;UBERON:0000344!1.30e-08!15;UBERON:0005172!2.34e-08!49;UBERON:0005173!2.34e-08!49;UBERON:0002417!2.34e-08!49;UBERON:0000916!2.34e-08!49;UBERON:0005911!9.49e-08!69;UBERON:0002048!1.69e-07!14;UBERON:0000117!1.69e-07!14;UBERON:0000171!1.69e-07!14;UBERON:0000170!1.69e-07!14;UBERON:0005597!1.69e-07!14;UBERON:0000118!1.69e-07!14;UBERON:0001242!2.71e-07!13;UBERON:0000060!2.71e-07!13;UBERON:0001262!2.71e-07!13;UBERON:0004786!2.71e-07!13;UBERON:0000466!5.14e-07!79;UBERON:0003914!8.93e-07!47;UBERON:0005153!9.61e-07!17
}}
}}

Revision as of 19:56, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr2:68973840..68973854,+p3@Nostrin
Mm9::chr2:68973856..68973918,+p1@Nostrin
Mm9::chr2:68973920..68973944,+p2@Nostrin


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
endoderm-derived structure2.92e-20118
endoderm2.92e-20118
presumptive endoderm2.92e-20118
digestive system3.24e-19116
digestive tract3.24e-19116
primitive gut3.24e-19116
subdivision of digestive tract6.01e-18114
gastrointestinal system1.37e-1447
intestine4.26e-1331
subdivision of trunk9.99e-1366
trunk region element1.36e-1179
organ component layer7.95e-1024
digestive tract diverticulum9.86e-1023
sac9.86e-1023
trunk1.37e-0990
liver3.10e-0922
epithelial sac3.10e-0922
digestive gland3.10e-0922
epithelium of foregut-midgut junction3.10e-0922
anatomical boundary3.10e-0922
hepatobiliary system3.10e-0922
foregut-midgut junction3.10e-0922
hepatic diverticulum3.10e-0922
liver primordium3.10e-0922
septum transversum3.10e-0922
liver bud3.10e-0922
exocrine gland8.55e-0925
exocrine system8.55e-0925
mucosa1.30e-0815
abdomen element2.34e-0849
abdominal segment element2.34e-0849
abdominal segment of trunk2.34e-0849
abdomen2.34e-0849
endo-epithelium9.49e-0869
lung1.69e-0714
respiratory tube1.69e-0714
respiration organ1.69e-0714
pair of lungs1.69e-0714
lung primordium1.69e-0714
lung bud1.69e-0714
intestinal mucosa2.71e-0713
anatomical wall2.71e-0713
wall of intestine2.71e-0713
gastrointestinal system mucosa2.71e-0713
immaterial anatomical entity5.14e-0779
epithelial tube8.93e-0747
epithelial bud9.61e-0717


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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