FFCP PHASE1:Mm9::chr7:126874249..126874254,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=503|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr7:126874249..126874254,+|id=chr7:126874249..126874254,+|ontology_enrichment_celltype=CL:0002614!2.23e-08!3;CL:0002610!2.42e-08!3|ontology_enrichment_celltype_v019_2=CL:0002614,7.42e-16,3;CL:0002610,8.79e-16,3;CL:0000117,3.61e-08,23;CL:0000337,3.61e-08,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002298!2.25e-22!6;UBERON:0002616!2.80e-16!49;UBERON:0000955!6.44e-16!50;UBERON:0006238!6.44e-16!50;UBERON:0002950!7.23e-13!4;UBERON:0001891!7.23e-13!4;UBERON:0009616!7.23e-13!4;UBERON:0001049!9.70e-13!52;UBERON:0005068!9.70e-13!52;UBERON:0006241!9.70e-13!52;UBERON:0007135!9.70e-13!52;UBERON:0000033!2.95e-12!63;UBERON:0001017!3.43e-12!73;UBERON:0005743!3.43e-12!73;UBERON:0000073!8.20e-12!75;UBERON:0001016!8.20e-12!75;UBERON:0001896!1.48e-11!2;UBERON:0005290!1.48e-11!2;UBERON:0010096!1.48e-11!2;UBERON:0002346!7.19e-09!71;UBERON:0003075!7.19e-09!71;UBERON:0007284!7.19e-09!71;UBERON:0007811!1.80e-08!86;UBERON:0004733!1.94e-08!6;UBERON:0004732!1.94e-08!6;UBERON:0002028!1.94e-08!6;UBERON:0007277!1.94e-08!6;UBERON:0002038!2.23e-08!3;UBERON:0002308!2.23e-08!3;UBERON:0009663!2.23e-08!3;UBERON:0009661!2.23e-08!3;UBERON:0006331!2.23e-08!3;UBERON:0000125!2.23e-08!3;UBERON:0004684!2.42e-08!3;UBERON:0002275!2.42e-08!3;UBERON:0004121!3.80e-08!102;UBERON:0000924!3.80e-08!102;UBERON:0006601!3.80e-08!102;UBERON:0000153!1.38e-07!94;UBERON:0003080!2.33e-07!40;UBERON:0003076!2.93e-07!12;UBERON:0003057!2.93e-07!12;UBERON:0007023!6.09e-07!51|ontology_enrichment_uberon_v019_2=UBERON:0002038,7.42e-16,3;UBERON:0009663,7.42e-16,3;UBERON:0009661,7.42e-16,3;UBERON:0000125,7.42e-16,3;UBERON:0002308,7.42e-16,3;UBERON:0004684,8.79e-16,3;UBERON:0002275,8.79e-16,3;UBERON:0002950,3.81e-12,4;UBERON:0001891,3.81e-12,4;UBERON:0009616,3.81e-12,4;UBERON:0010286,3.81e-12,4;UBERON:0000073,2.06e-07,54;UBERON:0001017,2.40e-07,73;UBERON:0001016,3.81e-07,75;UBERON:0001896,8.63e-07,2;UBERON:0002298,8.63e-07,2;UBERON:0005290,8.63e-07,2;UBERON:0010096,8.63e-07,2|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.935476191661768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.65993539510744,4.45458946443106,0,0,0,2.79182999001381,0,3.20876320331301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.83778682725382,0,0,0,0,0.898743836428936,0,0,0.347648640384553,0,0.41557608911912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05144974282064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.80275294993896,2.46144541843627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.29797711407357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.56369293868419,0,0,0,0,0,0,0,0,0,1.15212002503146,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.45032120322422,0.453142408984205,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr7:126874249..126874254,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=503 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr7:126874249..126874254,+ | |||
|id=chr7:126874249..126874254,+ | |||
|ontology_enrichment_celltype=CL:0002614!2.23e-08!3;CL:0002610!2.42e-08!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002614,7.42e-16,3;CL:0002610,8.79e-16,3;CL:0000117,3.61e-08,23;CL:0000337,3.61e-08,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002298!2.25e-22!6;UBERON:0002616!2.80e-16!49;UBERON:0000955!6.44e-16!50;UBERON:0006238!6.44e-16!50;UBERON:0002950!7.23e-13!4;UBERON:0001891!7.23e-13!4;UBERON:0009616!7.23e-13!4;UBERON:0001049!9.70e-13!52;UBERON:0005068!9.70e-13!52;UBERON:0006241!9.70e-13!52;UBERON:0007135!9.70e-13!52;UBERON:0000033!2.95e-12!63;UBERON:0001017!3.43e-12!73;UBERON:0005743!3.43e-12!73;UBERON:0000073!8.20e-12!75;UBERON:0001016!8.20e-12!75;UBERON:0001896!1.48e-11!2;UBERON:0005290!1.48e-11!2;UBERON:0010096!1.48e-11!2;UBERON:0002346!7.19e-09!71;UBERON:0003075!7.19e-09!71;UBERON:0007284!7.19e-09!71;UBERON:0007811!1.80e-08!86;UBERON:0004733!1.94e-08!6;UBERON:0004732!1.94e-08!6;UBERON:0002028!1.94e-08!6;UBERON:0007277!1.94e-08!6;UBERON:0002038!2.23e-08!3;UBERON:0002308!2.23e-08!3;UBERON:0009663!2.23e-08!3;UBERON:0009661!2.23e-08!3;UBERON:0006331!2.23e-08!3;UBERON:0000125!2.23e-08!3;UBERON:0004684!2.42e-08!3;UBERON:0002275!2.42e-08!3;UBERON:0004121!3.80e-08!102;UBERON:0000924!3.80e-08!102;UBERON:0006601!3.80e-08!102;UBERON:0000153!1.38e-07!94;UBERON:0003080!2.33e-07!40;UBERON:0003076!2.93e-07!12;UBERON:0003057!2.93e-07!12;UBERON:0007023!6.09e-07!51 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002038,7.42e-16,3;UBERON:0009663,7.42e-16,3;UBERON:0009661,7.42e-16,3;UBERON:0000125,7.42e-16,3;UBERON:0002308,7.42e-16,3;UBERON:0004684,8.79e-16,3;UBERON:0002275,8.79e-16,3;UBERON:0002950,3.81e-12,4;UBERON:0001891,3.81e-12,4;UBERON:0009616,3.81e-12,4;UBERON:0010286,3.81e-12,4;UBERON:0000073,2.06e-07,54;UBERON:0001017,2.40e-07,73;UBERON:0001016,3.81e-07,75;UBERON:0001896,8.63e-07,2;UBERON:0002298,8.63e-07,2;UBERON:0005290,8.63e-07,2;UBERON:0010096,8.63e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.935476191661768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.65993539510744,4.45458946443106,0,0,0,2.79182999001381,0,3.20876320331301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.83778682725382,0,0,0,0,0.898743836428936,0,0,0.347648640384553,0,0.41557608911912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05144974282064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.80275294993896,2.46144541843627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.29797711407357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.56369293868419,0,0,0,0,0,0,0,0,0,1.15212002503146,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.45032120322422,0.453142408984205,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr7:126874249..126874254,+ | |||
}} |
Revision as of 11:37, 14 September 2013
Short description: | p@chr7:126874249..126874254, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr7:126874249..126874254, + |
Coexpression cluster: | MCL_coexpression_mm9:503 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron of the substantia nigra | 7.42e-16 | 3 |
raphe nuclei neuron | 8.79e-16 | 3 |
CNS neuron (sensu Vertebrata) | 3.61e-08 | 23 |
neuroblast (sensu Vertebrata) | 3.61e-08 | 23 |
Ontology term | p-value | n |
---|---|---|
substantia nigra | 7.42e-16 | 3 |
telencephalic nucleus | 7.42e-16 | 3 |
midbrain nucleus | 7.42e-16 | 3 |
neural nucleus | 7.42e-16 | 3 |
nucleus of brain | 7.42e-16 | 3 |
raphe nuclei | 8.79e-16 | 3 |
reticular formation | 8.79e-16 | 3 |
regional part of midbrain | 3.81e-12 | 4 |
midbrain | 3.81e-12 | 4 |
presumptive midbrain | 3.81e-12 | 4 |
midbrain neural tube | 3.81e-12 | 4 |
regional part of nervous system | 2.06e-07 | 54 |
central nervous system | 2.40e-07 | 73 |
nervous system | 3.81e-07 | 75 |
medulla oblongata | 8.63e-07 | 2 |
brainstem | 8.63e-07 | 2 |
myelencephalon | 8.63e-07 | 2 |
future myelencephalon | 8.63e-07 | 2 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.