FFCP PHASE1:Mm9::chr11:100002237..100002272,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=72|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr11:100002237..100002272,+|id=chr11:100002237..100002272,+|ontology_enrichment_celltype=CL:0002076!2.15e-08!15;CL:0002563!2.79e-08!9;CL:0002251!2.79e-08!9|ontology_enrichment_celltype_v019_2=CL:0000066,1.20e-10,25;CL:0002076,4.42e-10,15;CL:0000068,9.40e-10,3;CL:0002202,9.40e-10,3;CL:0000069,9.40e-10,3;CL:0002632,9.40e-10,3;CL:0002368,9.40e-10,3;CL:0000307,9.40e-10,3;CL:0000377,9.40e-10,3;CL:0000682,1.60e-08,3;CL:0002250,8.06e-08,3;CL:0000223,3.12e-07,20|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005409!2.67e-19!59;UBERON:0000160!2.80e-18!43;UBERON:0004119!5.82e-14!130;UBERON:0000925!5.82e-14!130;UBERON:0006595!5.82e-14!130;UBERON:0001007!8.20e-13!128;UBERON:0001555!8.20e-13!128;UBERON:0007026!8.20e-13!128;UBERON:0000344!4.76e-12!15;UBERON:0004921!1.70e-11!126;UBERON:0004185!1.70e-11!126;UBERON:0001242!5.48e-10!13;UBERON:0000060!5.48e-10!13;UBERON:0001262!5.48e-10!13;UBERON:0004786!5.48e-10!13;UBERON:0004923!5.30e-09!24;UBERON:0003350!2.79e-08!9;UBERON:0004808!2.79e-08!9;UBERON:0001277!2.79e-08!9|ontology_enrichment_uberon_v019_2=UBERON:0000160,7.48e-26,31;UBERON:0005409,3.98e-24,47;UBERON:0000344,1.31e-15,15;UBERON:0004119,3.37e-14,118;UBERON:0000925,3.37e-14,118;UBERON:0006595,3.37e-14,118;UBERON:0001007,2.86e-13,116;UBERON:0001555,2.86e-13,116;UBERON:0007026,2.86e-13,116;UBERON:0001242,2.76e-11,13;UBERON:0001262,2.76e-11,13;UBERON:0004786,2.76e-11,13;UBERON:0002108,3.21e-11,4;UBERON:0004921,4.38e-11,114;UBERON:0004923,4.61e-11,24;UBERON:0003126,9.40e-10,3;UBERON:0001005,9.40e-10,3;UBERON:0007196,9.40e-10,3;UBERON:0001558,9.40e-10,3;UBERON:0000331,9.35e-09,3;UBERON:0002116,9.35e-09,3;UBERON:0001204,9.35e-09,3;UBERON:0001168,9.35e-09,3;UBERON:0001962,7.62e-07,2;UBERON:0001961,7.62e-07,2;UBERON:0001744,7.62e-07,2|phase1_expression=0,0.348975407639361,1.36499771816861,0.60492842261366,2.00358291978539,0.839396359559449,0.934450562382103,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,7.03966660290989,11.9292826154928,2.29692785646008,2.15380998079537,2.58565479223067,15.771943814879,2.01624103807945,2.43903561720835,0,0,0,1.1554064790051,2.1610503896604,1.42918549383658,0,0,0,0,0,0,0,0,0,0.782391344348039,0,0,0,0.139986421625363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,40.483824669097,37.2439002248395,37.408808931094,0.68510327831436,0,0,0,0,0,0,0.117588707135705,0,0.247194967734374,0,0,0,0,0,1.86391761218122,0,0,4.59822699375465,0,0,0,0,0,0,0,0,0,0,0.203678727700633,0,0.252722758433675,0,0.130120442962704,0,0.180062129805349,0,0,0,0,0,0,0,0,0.219195732427575,0.278047249225598,0,0,0,0,0,0,0,0,0,0,0.196764231747404,0.462801338662135,0,0,0,0,0.164167464079095,0.0810688095458557,0,0,0,0,0,0,0.793351699990633,0,0,0.902072229254653,0.403367049246685,0.667134131534611,1.14135375667535,2.84717436926707,1.81168850196412,2.5133520880027,0.596869416123452,1.36474860983384,1.79763881730844,3.6743468478698,4.38110801159608,0,0.114248512609729,0,0,0,0,0,0,0,0.123397163921801,0,0,0,0,0,0,0.25462585178142,0,0,0,0,0,0,0,0,0,0.369506380333209,0,0,0.169745085775188,0.469380496577004,0.167506257441816,0,0.390267295715598,0,0,0.318909537314974,0.491589944147214,0.518054945597687,0.578596234326046,0,0,0,0.275936746304732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.890328018336276,0.162886959353576,0.329940245945071,0,0,0,0.188605079755898,0.295301892880773,0.614870295887855,0.258428293168221,0.363533729477506,0,0,0,0,0,0,0,0,0,0.178368817602071,0,0,0.469343416127421,2.54198485036584,0.882113592219848,0,0,0,0,0,3.20628920292836,0,0,0,0,0,0,0,0,0,0,0,0,0.203319467126849,1.29606408986162,0.836353184057875,0.87345025498471,0.944050424693745,2.14898984885873,2.6175594198403,3.88844919875379,0,0,0,0,0,0.129159823477731,0,0.117357238645754,0,0,0,0,0,0,0.102710957164827,0.129920822977795,0,0,0,0,0,0,0,0,0,0,0,0.221985953374065,0.358855426437903,0.335769232728157,1.15913756419314,0.563047426353546,1.83151624267265,0.214368379079066,1.00314420807073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209613162627982,0,0,0.412070114477788,0,0,0.25347929989024,0,0,0,0,0,0.115884325944855,0,0,0,0,0,0,0.145346416632329,0,0.0846146078916765,0,0,0,0,0,0,0.409231043169689,0,0.192906610981141,0,0.233931608445408,0.214871054048298,0,0,0|short_description=p@chr11:100002237..100002272,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=72 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr11:100002237..100002272,+ | |||
|id=chr11:100002237..100002272,+ | |||
|ontology_enrichment_celltype=CL:0002076!2.15e-08!15;CL:0002563!2.79e-08!9;CL:0002251!2.79e-08!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.20e-10,25;CL:0002076,4.42e-10,15;CL:0000068,9.40e-10,3;CL:0002202,9.40e-10,3;CL:0000069,9.40e-10,3;CL:0002632,9.40e-10,3;CL:0002368,9.40e-10,3;CL:0000307,9.40e-10,3;CL:0000377,9.40e-10,3;CL:0000682,1.60e-08,3;CL:0002250,8.06e-08,3;CL:0000223,3.12e-07,20 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005409!2.67e-19!59;UBERON:0000160!2.80e-18!43;UBERON:0004119!5.82e-14!130;UBERON:0000925!5.82e-14!130;UBERON:0006595!5.82e-14!130;UBERON:0001007!8.20e-13!128;UBERON:0001555!8.20e-13!128;UBERON:0007026!8.20e-13!128;UBERON:0000344!4.76e-12!15;UBERON:0004921!1.70e-11!126;UBERON:0004185!1.70e-11!126;UBERON:0001242!5.48e-10!13;UBERON:0000060!5.48e-10!13;UBERON:0001262!5.48e-10!13;UBERON:0004786!5.48e-10!13;UBERON:0004923!5.30e-09!24;UBERON:0003350!2.79e-08!9;UBERON:0004808!2.79e-08!9;UBERON:0001277!2.79e-08!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,7.48e-26,31;UBERON:0005409,3.98e-24,47;UBERON:0000344,1.31e-15,15;UBERON:0004119,3.37e-14,118;UBERON:0000925,3.37e-14,118;UBERON:0006595,3.37e-14,118;UBERON:0001007,2.86e-13,116;UBERON:0001555,2.86e-13,116;UBERON:0007026,2.86e-13,116;UBERON:0001242,2.76e-11,13;UBERON:0001262,2.76e-11,13;UBERON:0004786,2.76e-11,13;UBERON:0002108,3.21e-11,4;UBERON:0004921,4.38e-11,114;UBERON:0004923,4.61e-11,24;UBERON:0003126,9.40e-10,3;UBERON:0001005,9.40e-10,3;UBERON:0007196,9.40e-10,3;UBERON:0001558,9.40e-10,3;UBERON:0000331,9.35e-09,3;UBERON:0002116,9.35e-09,3;UBERON:0001204,9.35e-09,3;UBERON:0001168,9.35e-09,3;UBERON:0001962,7.62e-07,2;UBERON:0001961,7.62e-07,2;UBERON:0001744,7.62e-07,2 | |||
|phase1_expression=0,0.348975407639361,1.36499771816861,0.60492842261366,2.00358291978539,0.839396359559449,0.934450562382103,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,7.03966660290989,11.9292826154928,2.29692785646008,2.15380998079537,2.58565479223067,15.771943814879,2.01624103807945,2.43903561720835,0,0,0,1.1554064790051,2.1610503896604,1.42918549383658,0,0,0,0,0,0,0,0,0,0.782391344348039,0,0,0,0.139986421625363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,40.483824669097,37.2439002248395,37.408808931094,0.68510327831436,0,0,0,0,0,0,0.117588707135705,0,0.247194967734374,0,0,0,0,0,1.86391761218122,0,0,4.59822699375465,0,0,0,0,0,0,0,0,0,0,0.203678727700633,0,0.252722758433675,0,0.130120442962704,0,0.180062129805349,0,0,0,0,0,0,0,0,0.219195732427575,0.278047249225598,0,0,0,0,0,0,0,0,0,0,0.196764231747404,0.462801338662135,0,0,0,0,0.164167464079095,0.0810688095458557,0,0,0,0,0,0,0.793351699990633,0,0,0.902072229254653,0.403367049246685,0.667134131534611,1.14135375667535,2.84717436926707,1.81168850196412,2.5133520880027,0.596869416123452,1.36474860983384,1.79763881730844,3.6743468478698,4.38110801159608,0,0.114248512609729,0,0,0,0,0,0,0,0.123397163921801,0,0,0,0,0,0,0.25462585178142,0,0,0,0,0,0,0,0,0,0.369506380333209,0,0,0.169745085775188,0.469380496577004,0.167506257441816,0,0.390267295715598,0,0,0.318909537314974,0.491589944147214,0.518054945597687,0.578596234326046,0,0,0,0.275936746304732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.890328018336276,0.162886959353576,0.329940245945071,0,0,0,0.188605079755898,0.295301892880773,0.614870295887855,0.258428293168221,0.363533729477506,0,0,0,0,0,0,0,0,0,0.178368817602071,0,0,0.469343416127421,2.54198485036584,0.882113592219848,0,0,0,0,0,3.20628920292836,0,0,0,0,0,0,0,0,0,0,0,0,0.203319467126849,1.29606408986162,0.836353184057875,0.87345025498471,0.944050424693745,2.14898984885873,2.6175594198403,3.88844919875379,0,0,0,0,0,0.129159823477731,0,0.117357238645754,0,0,0,0,0,0,0.102710957164827,0.129920822977795,0,0,0,0,0,0,0,0,0,0,0,0.221985953374065,0.358855426437903,0.335769232728157,1.15913756419314,0.563047426353546,1.83151624267265,0.214368379079066,1.00314420807073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209613162627982,0,0,0.412070114477788,0,0,0.25347929989024,0,0,0,0,0,0.115884325944855,0,0,0,0,0,0,0.145346416632329,0,0.0846146078916765,0,0,0,0,0,0,0.409231043169689,0,0.192906610981141,0,0.233931608445408,0.214871054048298,0,0,0 | |||
|short_description=p@chr11:100002237..100002272,+ | |||
}} |
Revision as of 18:08, 12 September 2013
Short description: | p@chr11:100002237..100002272, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr11:100002237..100002272, + |
Coexpression cluster: | MCL_coexpression_mm9:72 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.20e-10 | 25 |
endo-epithelial cell | 4.42e-10 | 15 |
duct epithelial cell | 9.40e-10 | 3 |
epithelial cell of tracheobronchial tree | 9.40e-10 | 3 |
branched duct epithelial cell | 9.40e-10 | 3 |
epithelial cell of lower respiratory tract | 9.40e-10 | 3 |
respiratory epithelial cell | 9.40e-10 | 3 |
tracheal epithelial cell | 9.40e-10 | 3 |
tracheoblast | 9.40e-10 | 3 |
M cell of gut | 1.60e-08 | 3 |
intestinal crypt stem cell | 8.06e-08 | 3 |
endodermal cell | 3.12e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
intestine | 7.48e-26 | 31 |
gastrointestinal system | 3.98e-24 | 47 |
mucosa | 1.31e-15 | 15 |
endoderm-derived structure | 3.37e-14 | 118 |
endoderm | 3.37e-14 | 118 |
presumptive endoderm | 3.37e-14 | 118 |
digestive system | 2.86e-13 | 116 |
digestive tract | 2.86e-13 | 116 |
primitive gut | 2.86e-13 | 116 |
intestinal mucosa | 2.76e-11 | 13 |
wall of intestine | 2.76e-11 | 13 |
gastrointestinal system mucosa | 2.76e-11 | 13 |
small intestine | 3.21e-11 | 4 |
subdivision of digestive tract | 4.38e-11 | 114 |
organ component layer | 4.61e-11 | 24 |
trachea | 9.40e-10 | 3 |
respiratory airway | 9.40e-10 | 3 |
tracheobronchial tree | 9.40e-10 | 3 |
lower respiratory tract | 9.40e-10 | 3 |
ileal mucosa | 9.35e-09 | 3 |
ileum | 9.35e-09 | 3 |
mucosa of small intestine | 9.35e-09 | 3 |
wall of small intestine | 9.35e-09 | 3 |
gut-associated lymphoid tissue | 7.62e-07 | 2 |
mucosa-associated lymphoid tissue | 7.62e-07 | 2 |
lymphoid tissue | 7.62e-07 | 2 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.