FFCP PHASE1:Hg19::chr10:64576805..64576854,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=W|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C17|description=CAGE_peak_at_chr10:64576805..64576854,+|id=chr10:64576805..64576854,+|ontology_enrichment_celltype=CL:0002057!1.50e-46!42;CL:0000860!7.05e-43!45;CL:0002031!8.45e-35!124;CL:0000738!2.88e-34!140;CL:0002087!5.21e-33!119;CL:0000839!1.34e-32!70;CL:0000557!5.16e-32!71;CL:0000766!2.41e-31!76;CL:0000988!4.28e-30!182;CL:0002194!6.08e-30!63;CL:0000576!6.08e-30!63;CL:0000040!6.08e-30!63;CL:0000559!6.08e-30!63;CL:0002009!8.93e-29!65;CL:0002032!1.51e-28!165;CL:0000837!1.51e-28!165;CL:0000037!2.93e-28!172;CL:0000566!2.93e-28!172;CL:0000763!1.40e-22!112;CL:0000049!1.40e-22!112;CL:0000134!8.95e-09!358;CL:0002320!2.29e-08!365;CL:0000219!5.74e-08!390;CL:0000048!3.34e-07!430;CL:0000080!4.25e-07!6;CL:0000723!6.35e-07!436|ontology_enrichment_celltype_v019=CL:0000860;8.62e-96;33!CL:0002057;8.62e-96;33!CL:0000473;1.67e-66;39!CL:0000234;1.67e-66;39!CL:0000576;2.92e-46;48!CL:0000766;2.69e-20;69!CL:0000763;7.82e-14;100!CL:0002087;2.18e-12;104!CL:0000738;1.10e-08;136|ontology_enrichment_celltype_v019_2=CL:0000860,6.45e-83,42;CL:0002057,6.45e-83,42;CL:0000473,3.23e-72,48;CL:0000234,3.23e-72,48;CL:0002194,3.14e-57,59;CL:0000576,3.14e-57,59;CL:0000040,3.14e-57,59;CL:0000559,3.14e-57,59;CL:0000839,1.42e-56,66;CL:0000557,1.06e-55,67;CL:0002009,2.71e-55,61;CL:0000766,1.08e-51,72;CL:0000763,1.13e-33,108;CL:0000049,1.13e-33,108;CL:0002031,4.81e-30,120;CL:0002087,3.15e-28,115;CL:0000738,3.45e-26,136;CL:0002032,1.10e-21,161;CL:0000837,1.10e-21,161;CL:0000988,1.21e-21,177;CL:0000037,1.17e-20,168;CL:0000134,3.73e-08,354;CL:0002320,6.23e-08,361;CL:0000219,3.80e-07,386|ontology_enrichment_development_v019=CL:0002057;8.86e-59;42!CL:0000049;1.04e-10;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!2.13e-29!80;UBERON:0002390!1.58e-27!102;UBERON:0003061!1.58e-27!102;UBERON:0001474!1.04e-26!86;UBERON:0002193!1.07e-25!112;UBERON:0004765!2.14e-21!101;UBERON:0001434!2.14e-21!101;UBERON:0002405!2.58e-20!115;UBERON:0002204!3.14e-11!167;UBERON:0003081!2.35e-09!216;UBERON:0002384!8.22e-08!375|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,7.30e-49,76;UBERON:0001474,3.99e-45,82;UBERON:0002390,2.75e-41,98;UBERON:0003061,2.75e-41,98;UBERON:0004765,6.59e-41,90;UBERON:0002405,1.64e-39,93;UBERON:0002193,3.11e-37,108;UBERON:0001434,1.43e-36,100;UBERON:0002204,8.44e-21,167;UBERON:0003081,1.71e-18,203;UBERON:0000926,8.25e-11,315;UBERON:0004120,8.25e-11,315;UBERON:0006603,8.25e-11,315;UBERON:0002384,1.25e-07,371|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0.0764134057479513,0.246301768349837,0.0787107813136792,0,0,0.154816123316076,0,0,0,0,0,0,0,0.401088894940283,0,0,0,0,0.581592955118259,0,0,1.62700325833979,0,2.47765096716083,3.16461631554365,1.7931249457037,1.41889337933151,0,1.29096936716765,0,0.941211697713023,2.18324920046277,0.224723484445085,1.22433556948361,1.28371610830437,1.27867425159808,1.31940520074686,1.79517291859469,1.70489900213078,1.45104619314292,0,3.73693349397345,3.51748131359441,2.08593167368081,1.95469960234605,1.21079900526674,1.47311054395026,0.632924774881769,0,0.212604299965044,0,0.112328631146495,0,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0.473447805734733,0,0.222820913770347,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0.267440195783507,0.289648807765598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,16.2578868505661,0,0.207328115540772,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0.502257091432126,0,0,0,0,0,0,0,0,0.197030760201927,0,0.256686072559497,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318203247925937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1605880751037,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0,0,0.102268682502155,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638002319463839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.77912677208373,0.123563938946503,0.104421949505455,0.067401132980677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121792598380896,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0.251567901752575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0,0,0,0,0.19998739585493,0,0,0,0,0,0,0,0,0,0,0,0.212574920101683,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115525666150338,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.467878926924211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727345877715,0,0,0,0,0,0,0,0.320568492303233|short_description=p@chr10:64576805..64576854,+}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=W | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C17 | |||
|description=CAGE_peak_at_chr10:64576805..64576854,+ | |||
|id=chr10:64576805..64576854,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.50e-46!42;CL:0000860!7.05e-43!45;CL:0002031!8.45e-35!124;CL:0000738!2.88e-34!140;CL:0002087!5.21e-33!119;CL:0000839!1.34e-32!70;CL:0000557!5.16e-32!71;CL:0000766!2.41e-31!76;CL:0000988!4.28e-30!182;CL:0002194!6.08e-30!63;CL:0000576!6.08e-30!63;CL:0000040!6.08e-30!63;CL:0000559!6.08e-30!63;CL:0002009!8.93e-29!65;CL:0002032!1.51e-28!165;CL:0000837!1.51e-28!165;CL:0000037!2.93e-28!172;CL:0000566!2.93e-28!172;CL:0000763!1.40e-22!112;CL:0000049!1.40e-22!112;CL:0000134!8.95e-09!358;CL:0002320!2.29e-08!365;CL:0000219!5.74e-08!390;CL:0000048!3.34e-07!430;CL:0000080!4.25e-07!6;CL:0000723!6.35e-07!436 | |||
|ontology_enrichment_celltype_v019=CL:0000860;8.62e-96;33!CL:0002057;8.62e-96;33!CL:0000473;1.67e-66;39!CL:0000234;1.67e-66;39!CL:0000576;2.92e-46;48!CL:0000766;2.69e-20;69!CL:0000763;7.82e-14;100!CL:0002087;2.18e-12;104!CL:0000738;1.10e-08;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,6.45e-83,42;CL:0002057,6.45e-83,42;CL:0000473,3.23e-72,48;CL:0000234,3.23e-72,48;CL:0002194,3.14e-57,59;CL:0000576,3.14e-57,59;CL:0000040,3.14e-57,59;CL:0000559,3.14e-57,59;CL:0000839,1.42e-56,66;CL:0000557,1.06e-55,67;CL:0002009,2.71e-55,61;CL:0000766,1.08e-51,72;CL:0000763,1.13e-33,108;CL:0000049,1.13e-33,108;CL:0002031,4.81e-30,120;CL:0002087,3.15e-28,115;CL:0000738,3.45e-26,136;CL:0002032,1.10e-21,161;CL:0000837,1.10e-21,161;CL:0000988,1.21e-21,177;CL:0000037,1.17e-20,168;CL:0000134,3.73e-08,354;CL:0002320,6.23e-08,361;CL:0000219,3.80e-07,386 | |||
|ontology_enrichment_development_v019=CL:0002057;8.86e-59;42!CL:0000049;1.04e-10;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!2.13e-29!80;UBERON:0002390!1.58e-27!102;UBERON:0003061!1.58e-27!102;UBERON:0001474!1.04e-26!86;UBERON:0002193!1.07e-25!112;UBERON:0004765!2.14e-21!101;UBERON:0001434!2.14e-21!101;UBERON:0002405!2.58e-20!115;UBERON:0002204!3.14e-11!167;UBERON:0003081!2.35e-09!216;UBERON:0002384!8.22e-08!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,7.30e-49,76;UBERON:0001474,3.99e-45,82;UBERON:0002390,2.75e-41,98;UBERON:0003061,2.75e-41,98;UBERON:0004765,6.59e-41,90;UBERON:0002405,1.64e-39,93;UBERON:0002193,3.11e-37,108;UBERON:0001434,1.43e-36,100;UBERON:0002204,8.44e-21,167;UBERON:0003081,1.71e-18,203;UBERON:0000926,8.25e-11,315;UBERON:0004120,8.25e-11,315;UBERON:0006603,8.25e-11,315;UBERON:0002384,1.25e-07,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0.0764134057479513,0.246301768349837,0.0787107813136792,0,0,0.154816123316076,0,0,0,0,0,0,0,0.401088894940283,0,0,0,0,0.581592955118259,0,0,1.62700325833979,0,2.47765096716083,3.16461631554365,1.7931249457037,1.41889337933151,0,1.29096936716765,0,0.941211697713023,2.18324920046277,0.224723484445085,1.22433556948361,1.28371610830437,1.27867425159808,1.31940520074686,1.79517291859469,1.70489900213078,1.45104619314292,0,3.73693349397345,3.51748131359441,2.08593167368081,1.95469960234605,1.21079900526674,1.47311054395026,0.632924774881769,0,0.212604299965044,0,0.112328631146495,0,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0.473447805734733,0,0.222820913770347,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0.267440195783507,0.289648807765598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,16.2578868505661,0,0.207328115540772,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0.502257091432126,0,0,0,0,0,0,0,0,0.197030760201927,0,0.256686072559497,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318203247925937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1605880751037,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0,0,0.102268682502155,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638002319463839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.77912677208373,0.123563938946503,0.104421949505455,0.067401132980677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121792598380896,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0.251567901752575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0,0,0,0,0.19998739585493,0,0,0,0,0,0,0,0,0,0,0,0.212574920101683,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115525666150338,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.467878926924211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727345877715,0,0,0,0,0,0,0,0.320568492303233 | |||
|short_description=p@chr10:64576805..64576854,+ | |||
}} |
Revision as of 13:57, 10 September 2013
Short description: | p@chr10:64576805..64576854, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr10:64576805..64576854, + |
Coexpression cluster: | C17_Mast_CD14_Monocytederived_Lymphatic_Smooth_mesenchymal_Macrophage |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 6.45e-83 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.45e-83 | 42 |
defensive cell | 3.23e-72 | 48 |
phagocyte | 3.23e-72 | 48 |
monopoietic cell | 3.14e-57 | 59 |
monocyte | 3.14e-57 | 59 |
monoblast | 3.14e-57 | 59 |
promonocyte | 3.14e-57 | 59 |
myeloid lineage restricted progenitor cell | 1.42e-56 | 66 |
granulocyte monocyte progenitor cell | 1.06e-55 | 67 |
macrophage dendritic cell progenitor | 2.71e-55 | 61 |
myeloid leukocyte | 1.08e-51 | 72 |
myeloid cell | 1.13e-33 | 108 |
common myeloid progenitor | 1.13e-33 | 108 |
hematopoietic lineage restricted progenitor cell | 4.81e-30 | 120 |
nongranular leukocyte | 3.15e-28 | 115 |
leukocyte | 3.45e-26 | 136 |
hematopoietic oligopotent progenitor cell | 1.10e-21 | 161 |
hematopoietic multipotent progenitor cell | 1.10e-21 | 161 |
hematopoietic cell | 1.21e-21 | 177 |
hematopoietic stem cell | 1.17e-20 | 168 |
mesenchymal cell | 3.73e-08 | 354 |
connective tissue cell | 6.23e-08 | 361 |
motile cell | 3.80e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 7.30e-49 | 76 |
bone element | 3.99e-45 | 82 |
hematopoietic system | 2.75e-41 | 98 |
blood island | 2.75e-41 | 98 |
skeletal element | 6.59e-41 | 90 |
immune system | 1.64e-39 | 93 |
hemolymphoid system | 3.11e-37 | 108 |
skeletal system | 1.43e-36 | 100 |
musculoskeletal system | 8.44e-21 | 167 |
lateral plate mesoderm | 1.71e-18 | 203 |
mesoderm | 8.25e-11 | 315 |
mesoderm-derived structure | 8.25e-11 | 315 |
presumptive mesoderm | 8.25e-11 | 315 |
connective tissue | 1.25e-07 | 371 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.